Result : P76227
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | Uncharacterized protein YnjH |
| NCBI Accession ID | U00096.3 |
| Organism | Escherichia coli (strain K12) |
| Left | 1841863 |
| Right | 1842135 |
| Strand | - |
| Nucleotide Sequence | GTGAGTCGAGCATTGTTCGCCGTAGTATTAGCATTTCCATTAATTGCACTGGCTAACCCGCATTATCGTCCGGACGTGGAGGTAAACGTACCGCCAGAAGTGTTCAGTTCAGGCGGGCAGTCAGCGCAGCCCTGTACTCAGTGCTGCGTTTATCAGGATCAAAATTATTCTGAAGGGGCGGTAATTAAAGCCGAAGGAATACTGCTGCAATGCCAGCGTGATGACAAAACCCTTAGCACTAATCCGCTGGTCTGGCGGCGCGTAAAGCCATAA |
| Sequence | MSRALFAVVLAFPLIALANPHYRPDVEVNVPPEVFSSGGQSAQPCTQCCVYQDQNYSEGAVIKAEGILLQCQRDDKTLSTNPLVWRRVKP |
| Source of smORF | Swiss-Prot |
| Function | The ORF matches to the profile of pfam07383. Profile Description: Protein of unknown function (DUF1496). This family consists of several bacterial proteins of around 90 residues in length. Members of this family seem to be found exclusively in the Orders Vibrionales and Enterobacteriales. The function of this family is unknown. |
| Pubmed ID | 9278503 16738553 |
| Domain | CDD:399984 |
| Functional Category | Others |
| Uniprot ID | P76227 |
| ORF Length (Amino Acid) | 90 |
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| Conservation Analysis |
No. of Species: 45
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 1841863 | 1842135 | - | NC_000913.3 | Escherichia coli str. K-12 substr. MG1655 |
| 2 | 2216860 | 2217132 | - | NZ_CP061527.1 | Shigella dysenteriae |
| 3 | 1501953 | 1502225 | + | NC_004337.2 | Shigella flexneri 2a str. 301 |
| 4 | 1991851 | 1992123 | + | NZ_LR134340.1 | Escherichia marmotae |
| 5 | 1773631 | 1773903 | - | NZ_AP014857.1 | Escherichia albertii |
| 6 | 2441512 | 2441784 | - | NC_002695.2 | Escherichia coli O157:H7 str. Sakai |
| 7 | 1701378 | 1701620 | - | NC_009792.1 | Citrobacter koseri ATCC BAA-895 |
| 8 | 1380209 | 1380484 | + | NC_003197.2 | Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 |
| 9 | 297690 | 297929 | + | NZ_CP057657.1 | Escherichia fergusonii |
| 10 | 633191 | 633466 | + | NZ_CP038469.1 | Citrobacter tructae |
| 11 | 3463345 | 3463590 | - | NZ_CP045205.1 | Citrobacter telavivensis |
| 12 | 291621 | 291896 | - | NZ_CP044098.1 | Citrobacter portucalensis |
| 13 | 3794767 | 3795042 | + | NZ_CP053416.1 | Salmonella bongori |
| 14 | 3624444 | 3624680 | + | NZ_CP042941.1 | Atlantibacter hermannii |
| 15 | 4778625 | 4778900 | + | NZ_CP033744.1 | Citrobacter freundii |
| 16 | 744595 | 744867 | + | NZ_CP023529.1 | Lelliottia amnigena |
| 17 | 2660750 | 2660977 | - | NZ_CP054058.1 | Scandinavium goeteborgense |
| 18 | 1888133 | 1888405 | + | NZ_CP027986.1 | Enterobacter sichuanensis |
| 19 | 3532867 | 3533112 | + | NZ_LT556085.1 | Citrobacter amalonaticus |
| 20 | 1853901 | 1854173 | + | NZ_AP022508.1 | Enterobacter bugandensis |
| 21 | 1823415 | 1823657 | + | NZ_CP017184.1 | Enterobacter roggenkampii |
| 22 | 1804795 | 1805067 | + | NZ_CP012264.1 | Cronobacter condimenti 1330 |
| 23 | 1091604 | 1091843 | + | NZ_CP017279.1 | Enterobacter ludwigii |
| 24 | 1374923 | 1375207 | + | NZ_CP011602.1 | Phytobacter ursingii |
| 25 | 1871536 | 1871808 | + | NZ_CP009756.1 | Enterobacter cloacae |
| 26 | 1848013 | 1848285 | + | NC_015968.1 | Enterobacter soli |
| 27 | 2631766 | 2632050 | + | NZ_CP051548.1 | Phytobacter diazotrophicus |
| 28 | 1396688 | 1396948 | + | NC_013716.1 | Citrobacter rodentium ICC168 |
| 29 | 4349765 | 4350022 | + | NZ_AP019007.1 | Enterobacter oligotrophicus |
| 30 | 2009508 | 2009741 | + | NZ_CP012871.1 | [Enterobacter] lignolyticus |
| 31 | 2104502 | 2104780 | + | NZ_CP043318.1 | Enterobacter chengduensis |
| 32 | 2675952 | 2676239 | - | NZ_CP035129.1 | Kosakonia cowanii |
| 33 | 670831 | 671109 | - | NZ_CP025034.2 | Enterobacter sp. SGAir0187 |
| 34 | 3158749 | 3159000 | - | NZ_CP014007.2 | Kosakonia oryzae |
| 35 | 2025667 | 2025918 | + | NZ_CP015113.1 | Kosakonia radicincitans |
| 36 | 2673256 | 2673480 | - | NZ_AP023184.1 | Buttiauxella agrestis |
| 37 | 1053062 | 1053295 | - | NZ_CP016337.1 | Kosakonia sacchari |
| 38 | 2964478 | 2964699 | - | NZ_CP023525.1 | Cedecea neteri |
| 39 | 2829248 | 2829523 | - | NZ_CP013990.1 | Leclercia adecarboxylata |
| 40 | 3214421 | 3214687 | + | NZ_CP020388.1 | Pluralibacter gergoviae |
| 41 | 2721623 | 2721844 | - | NZ_LR134201.1 | Cedecea lapagei |
| 42 | 3455174 | 3455446 | + | NZ_CP040428.1 | Jejubacter calystegiae |
| 43 | 4195181 | 4195414 | - | NZ_CP065640.1 | Serratia rubidaea |
| 44 | 2137321 | 2137551 | + | NZ_CP046293.1 | Yersinia intermedia |
| 45 | 3347249 | 3347479 | + | NZ_CP054043.1 | Yersinia mollaretii ATCC 43969 |
| 46 | 574840 | 575070 | - | NZ_CP009781.1 | Yersinia aldovae 670-83 |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_LR134340.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF00005.29 | 0.6 | 27 | 3011.0 | opposite-strand | ABC transporter |
| 2 | PF00581.22 | 0.76 | 34 | 1628 | opposite-strand | Rhodanese-like domain |
| 3 | PF01066.23 | 0.64 | 29 | 1014.0 | same-strand | CDP-alcohol phosphatidyltransferase |
| 4 | PF00293.30 | 0.98 | 44 | -40 | opposite-strand | NUDIX domain |
| 5 | PF14815.8 | 0.98 | 44 | -40 | opposite-strand | NUDIX domain |
| 6 | PF00208.23 | 0.82 | 37 | 238.0 | opposite-strand | Glutamate/Leucine/Phenylalanine/Valine dehydrogenase |
| 7 | PF02812.20 | 0.82 | 37 | 238.0 | opposite-strand | Glu/Leu/Phe/Val dehydrogenase, dimerisation domain |
| 8 | PF01131.22 | 0.93 | 42 | 1653 | same-strand | DNA topoisomerase |
| 9 | PF01751.24 | 0.93 | 42 | 1653 | same-strand | Toprim domain |
| 10 | PF02769.24 | 0.89 | 40 | 3584 | same-strand | AIR synthase related protein, C-terminal domain |
| 11 | PF00586.26 | 0.89 | 40 | 3584 | same-strand | AIR synthase related protein, N-terminal domain |
| 12 | PF00881.26 | 0.84 | 38 | 4745 | same-strand | Nitroreductase family |
| 13 | PF01343.20 | 0.62 | 28 | 5435.0 | opposite-strand | Peptidase family S49 |
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