Protein Information |
Information Type | Description |
---|---|
Protein name | Uncharacterized protein YnfN |
NCBI Accession ID | U00096.3 |
Organism | Escherichia coli (strain K12) |
Left | 1637954 |
Right | 1638109 |
Strand | - |
Nucleotide Sequence | ATGCGTGAATATCCAAATGGCGAAAAAACACACCTTACTGTAATGGCCGCAGGGTTTCCATCTCTGACCGGAGATCATAAAGTCATTTATGTAGCCGCGGATCGACATGTTACTTCAGAAGAAATTCTGGAAGCAGCAATAAGGCTCTTGAGTTGA |
Sequence | MREYPNGEKTHLTVMAAGFPSLTGDHKVIYVAADRHVTSEEILEAAIRLLS |
Source of smORF | Swiss-Prot |
Function | |
Pubmed ID | 9278503 16738553 14527658 |
Domain | |
Functional Category | Others |
Uniprot ID | P76157 |
ORF Length (Amino Acid) | 51 |
Conservation Analysis |
Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
---|---|---|---|---|---|
1 | 1637954 | 1638109 | - | NC_000913.3 | Escherichia coli str. K-12 substr. MG1655 |
2 | 3997261 | 3997416 | + | NZ_CP057657.1 | Escherichia fergusonii |
3 | 605799 | 605954 | - | NZ_CP033744.1 | Citrobacter freundii |
4 | 3511435 | 3511590 | - | NZ_CP045205.1 | Citrobacter telavivensis |
5 | 2485336 | 2485500 | + | NZ_AP022508.1 | Enterobacter bugandensis |
6 | 2120233 | 2120409 | + | NZ_CP017279.1 | Enterobacter ludwigii |
7 | 3052867 | 3053043 | + | NZ_CP026047.1 | Raoultella planticola |
8 | 4172463 | 4172639 | - | NZ_CP046672.1 | Raoultella ornithinolytica |
9 | 2711128 | 2711301 | - | NZ_CP054058.1 | Scandinavium goeteborgense |
10 | 1061116 | 1061301 | - | NZ_CP035129.1 | Kosakonia cowanii |
Neighborhood Conservation Analysis |
Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
---|---|---|---|---|---|---|
1 | PF00313.24 | 0.6 | 6 | 346.5 | same-strand | 'Cold-shock' DNA-binding domain |