* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_004337.2
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF01292.22
|
1.0
|
3
|
530.0
|
opposite-strand
|
Prokaryotic cytochrome b561
|
2
|
PF00015.23
|
1.0
|
3
|
842.0
|
opposite-strand
|
Methyl-accepting chemotaxis protein (MCP) signalling domain
|
3
|
PF02203.17
|
0.67
|
2
|
341
|
opposite-strand
|
Tar ligand binding domain homologue
|
4
|
PF00672.27
|
1.0
|
3
|
842.0
|
opposite-strand
|
HAMP domain
|
5
|
PF03466.22
|
0.67
|
2
|
2019
|
same-strand
|
LysR substrate binding domain
|
6
|
PF00126.29
|
0.67
|
2
|
2019
|
same-strand
|
Bacterial regulatory helix-turn-helix protein, lysR family
|
7
|
PF00044.26
|
1.0
|
3
|
1249
|
same-strand
|
Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
|
8
|
PF01848.18
|
0.67
|
2
|
-109.0
|
same-strand
|
Hok/gef family
|
++ More..