ProsmORF-pred
Result : P74909
Protein Information
Information Type Description
Protein name 50S ribosomal protein L30
NCBI Accession ID X90765.2
Organism Thermus thermophilus
Left 1682
Right 1864
Strand +
Nucleotide Sequence ATGCCCAGGCTCAAGGTTAAGCTGGTGAAGAGCCCCATCGGCTACCCCAAGGACCAGAAGGCGGCCCTCAAGGCCCTGGGGCTTAGGCGGCTTCAGCAGGAGCGGGTCCTCGAGGACACCCCCGCCATCCGGGGGAACGTGGAGAAGGTGGCGCACCTCGTGCGCGTGGAGGTGGTGGAATGA
Sequence MPRLKVKLVKSPIGYPKDQKAALKALGLRRLQQERVLEDTPAIRGNVEKVAHLVRVEVVE
Source of smORF Swiss-Prot
Function The ORF matches to the profile of cl00203. Profile Description: N/A. This family includes prokaryotic L30 and eukaryotic L7.
Pubmed ID 9249063 10531479
Domain CDD:412218
Functional Category Ribosomal_protein
Uniprot ID P74909
ORF Length (Amino Acid) 60
++ More..
Conservation Analysis
Conservation Analysis
No. of Species: 448
Sr.No. Left Position Right Position Strand NCBI Accession id Species Name
1 1582584 1582766 - NC_006461.1 Thermus thermophilus HB8
2 417495 417677 + NZ_CP014141.1 Thermus parvatiensis
3 266303 266485 + NC_019386.1 Thermus oshimai JL-2
4 327767 327949 + NZ_CP010822.1 Thermus aquaticus Y51MC23
5 1339337 1339519 + NZ_CP016312.1 Thermus brockianus
6 1558015 1558197 - NZ_CP038452.1 Thermus caldilimi
7 2946860 2947042 - NC_014212.1 Meiothermus silvanus DSM 9946
8 7056697 7056891 + NZ_CP035758.1 Ktedonosporobacter rubrisoli
9 332734 332916 + NZ_AP018786.1 Sutterella megalosphaeroides
10 721936 722127 - NC_015707.1 Pseudothermotoga thermarum DSM 5069
11 1441967 1442152 - NC_017095.1 Fervidobacterium pennivorans DSM 9078
12 1940494 1940685 - NZ_CP018800.1 Mariprofundus ferrinatatus
13 1717187 1717372 - NC_015387.1 Marinithermus hydrothermalis DSM 14884
14 3350366 3350524 - NZ_CP064338.1 Schlegelella thermodepolymerans
15 2954817 2954978 - NZ_CP045875.1 Heliorestis convoluta
16 1215389 1215574 - NC_009718.1 Fervidobacterium nodosum Rt17-B1
17 996942 997127 + NZ_CP007389.1 Thermosipho melanesiensis
18 1104896 1105081 + NZ_AP019004.1 Phascolarctobacterium faecium
19 1244016 1244201 + NC_011653.1 Thermosipho africanus TCF52B
20 2126015 2126200 - NC_013740.1 Acidaminococcus fermentans DSM 20731
21 1484151 1484336 - NZ_CP014334.1 Fervidobacterium islandicum
22 155333 155518 + NZ_CP024955.1 Kyrpidia spormannii
23 161923 162108 + NC_014098.1 Kyrpidia tusciae DSM 2912
24 2504092 2504274 - NZ_CP068055.1 Sutterella wadsworthensis
25 4362283 4362465 - NZ_CP022657.1 Tumebacillus algifaecis
26 2527786 2527962 - NC_014033.1 Prevotella ruminicola 23
27 2015636 2015824 - NC_012785.1 Kosmotoga olearia TBF 19.5.1
28 1795577 1795759 + NZ_CP021434.1 Tumebacillus avium
29 440850 441026 + NZ_CP023863.1 Prevotella jejuni
30 2025791 2025940 + NZ_CP040882.1 Sutterella faecalis
31 1412233 1412394 + NC_010337.2 Heliomicrobium modesticaldum Ice1
32 2826753 2826929 - NZ_LR134384.1 Prevotella oris
33 690264 690446 + NZ_AP012547.1 Sulfuritalea hydrogenivorans sk43H
34 67755 67931 - NZ_CP024727.1 Prevotella intermedia
35 1125678 1125851 + NC_014960.1 Anaerolinea thermophila UNI-1
36 475310 475486 - NZ_CP016622.1 Parageobacillus thermoglucosidasius
37 3990865 3991050 + NZ_CP016809.1 Paenibacillus ihbetae
38 3639557 3639706 - NC_008825.1 Methylibium petroleiphilum PM1
39 1327938 1328084 + NC_012881.1 Maridesulfovibrio salexigens DSM 2638
40 1178414 1178566 + NZ_CP022121.1 Dehalobacterium formicoaceticum
41 1637440 1637625 - NC_014761.1 Oceanithermus profundus DSM 14977
42 2559355 2559537 - NZ_CP010554.1 Rugosibacter aromaticivorans
43 1516270 1516461 + NC_017059.1 Pararhodospirillum photometricum DSM 122
44 85845 86024 - NZ_AP019551.1 Athalassotoga saccharophila
45 450676 450852 + NC_014370.1 Prevotella melaninogenica ATCC 25845
46 6081776 6081946 + NC_018025.1 Desulfomonile tiedjei DSM 6799
47 2131718 2131897 - NZ_CP029256.1 Christensenella minuta
48 1311757 1311951 + NZ_CP024199.1 Thalassospira marina
49 330450 330641 + NZ_CP018799.1 Mariprofundus aestuarium
50 48713 48895 - NZ_CP020772.1 Halobacillus mangrovi
51 341987 342163 - NZ_CP070511.1 Parageobacillus toebii
52 937109 937297 - NC_011959.1 Thermomicrobium roseum DSM 5159
53 3368301 3368504 - NC_007626.1 Magnetospirillum magneticum AMB-1
54 339364 339546 + NC_008578.1 Acidothermus cellulolyticus 11B
55 446191 446373 + NC_018017.1 Desulfitobacterium dehalogenans ATCC 51507
56 1577887 1578081 + NC_010581.1 Beijerinckia indica subsp. indica ATCC 9039
57 656861 657010 + NZ_CP013729.1 Roseateles depolymerans
58 617414 617605 + NC_009828.1 Pseudothermotoga lettingae TMO
59 610577 610768 + NC_022792.1 Pseudothermotoga elfii DSM 9442 = NBRC 107921
60 3099426 3099593 - NC_017584.1 Rhodospirillum rubrum F11
61 3090617 3090769 - NZ_CP014342.1 Geobacillus subterraneus
62 2065163 2065345 - NC_007503.1 Carboxydothermus hydrogenoformans Z-2901
63 5840778 5840933 - NZ_CP043046.1 Pigmentiphaga aceris
64 477830 478012 + NC_011830.1 Desulfitobacterium hafniense DCB-2
65 52682 52834 - NZ_CP015438.1 Anoxybacillus amylolyticus
66 816562 816738 + NZ_AP014509.1 Thermotoga caldifontis AZM44c09
67 4039760 4039942 - NZ_CP016020.1 Bacillus weihaiensis
68 1410258 1410443 + NZ_CP059066.1 Koleobacter methoxysyntrophicus
69 64695 64880 + NZ_CP036259.1 Sporomusa termitida
70 928538 928729 + NZ_CP029353.1 Azospirillum thermophilum
71 1201857 1202027 + NZ_CP017703.1 Aeribacillus pallidus
72 3250802 3250963 - NZ_LR778301.1 Denitratisoma oestradiolicum
73 1082059 1082232 - NZ_CP053923.1 Defluviicoccus vanus
74 1256344 1256523 + NZ_CP012836.1 Algoriphagus sanaruensis
75 2795191 2795373 + NZ_CP011058.1 Paenibacillus beijingensis
76 155208 155390 + NZ_CP023704.1 Caldibacillus thermoamylovorans
77 152311 152496 + NC_017668.1 Halobacillus halophilus DSM 2266
78 318917 319102 + NC_019897.1 Thermobacillus composti KWC4
79 128127 128315 + NZ_CP012152.1 Anoxybacillus gonensis
80 624648 624836 + NZ_CP031093.1 Hydrocarboniclastica marina
81 310689 310871 + NZ_CP007032.1 Desulfitobacterium metallireducens DSM 15288
82 2489562 2489744 - NZ_CP017237.1 Moorella thermoacetica
83 383814 383999 - NZ_AP022345.1 Fluviibacter phosphoraccumulans
84 917741 917905 + NZ_AP019700.1 Stella humosa
85 2472046 2472213 - NZ_CP054619.1 Azospirillum oryzae
86 1700098 1700274 + NC_022795.1 Pseudothermotoga hypogea DSM 11164 = NBRC 106472
87 136607 136789 + NZ_CP024035.1 Priestia aryabhattai
88 1903108 1903296 + NC_014414.1 Parvularcula bermudensis HTCC2503
89 470048 470230 + NC_019903.1 Desulfitobacterium dichloroeliminans LMG P-21439
90 52885 53037 + NC_023065.1 Magnetospirillum gryphiswaldense MSR-1 v2
91 754595 754780 + NC_015682.1 Thermodesulfobacterium geofontis OPF15
92 1144142 1144318 - NZ_CP012074.1 Prevotella fusca JCM 17724
93 2570480 2570662 - NZ_CP011361.2 Salimicrobium jeotgali
94 5010991 5011158 - NC_023018.2 Pandoraea pnomenusa
95 5485111 5485278 - NZ_CP010310.2 Pandoraea pulmonicola
96 2348023 2348202 + NZ_CP009709.1 Weizmannia coagulans DSM 1 = ATCC 7050
97 1311735 1311929 + NZ_CP004388.1 Thalassospira xiamenensis M-5 = DSM 17429
98 1907470 1907664 + NZ_CP031555.1 Thalassospira indica
99 178381 178542 - NZ_CP014525.1 Haematospirillum jordaniae
100 5245989 5246156 - NZ_CP010897.2 Pandoraea vervacti
101 3390067 3390222 - NZ_AP014936.1 Sulfurifustis variabilis
102 1330645 1330794 + NZ_CP022423.1 Vitreoscilla filiformis
103 146925 147071 + NZ_CP012024.1 Bacillus smithii
104 2175994 2176170 - NZ_LR215980.1 Paraprevotella xylaniphila YIT 11841
105 3274572 3274760 - NZ_CP041025.1 Paremcibacter congregatus
106 508637 508804 + NC_018068.1 Desulfosporosinus acidiphilus SJ4
107 1748359 1748505 - NZ_CP041305.1 Cytobacillus ciccensis
108 1259853 1260035 + NZ_CP064781.1 Azospira restricta
109 772195 772374 - NZ_CP011071.1 Muricauda lutaonensis
110 404554 404721 + NZ_CP030126.1 Indioceanicola profundi
111 3266928 3267095 + NZ_CP025611.1 Niveispirillum cyanobacteriorum
112 4270760 4270936 + NZ_CP046904.1 Massilia flava
113 5417034 5417210 + NZ_CP040017.1 Massilia umbonata
114 6460146 6460322 - NZ_CP036401.1 Massilia albidiflava
115 363046 363213 + NZ_CP029829.1 Azospirillum ramasamyi
116 472154 472342 - NZ_CP042909.1 Thermosulfurimonas marina
117 3820690 3820872 - NZ_CP016210.1 Azoarcus olearius
118 145759 145905 + NZ_CP042593.1 Bacillus dafuensis
119 308822 308989 - NZ_CP012401.1 Azospirillum thiophilum
120 6035315 6035491 - NZ_CP028324.1 Massilia armeniaca
121 245748 245918 + NC_016584.1 Desulfosporosinus orientis DSM 765
122 592392 592586 + NZ_LT859958.1 Brevefilum fermentans
123 335282 335464 - NZ_CP019419.1 Polaribacter reichenbachii
124 1307539 1307718 + NC_014230.1 Croceibacter atlanticus HTCC2559
125 852800 852979 - NZ_CP023392.1 Lactococcus raffinolactis
126 1020133 1020312 + NZ_LT605205.1 Proteiniphilum saccharofermentans
127 2814396 2814575 - NC_020134.1 Thermoclostridium stercorarium subsp. stercorarium DSM 8532
128 2653101 2653283 - NZ_CP013189.1 Pseudohongiella spirulinae
129 352576 352737 - NZ_LS974202.1 Mesotoga infera
130 491188 491370 + NZ_CP029331.1 Thauera hydrothermalis
131 297739 297921 + NZ_CP018180.1 Liquorilactobacillus nagelii
132 3366682 3366831 - NZ_CP029210.1 Aquabacterium olei
133 708343 708522 + NC_007517.1 Geobacter metallireducens GS-15
134 984117 984281 + NZ_CP040517.1 Luteithermobacter gelatinilyticus
135 974198 974350 + NC_013501.1 Rhodothermus marinus DSM 4252
136 114343 114525 + NZ_LS483343.1 Streptococcus ferus
137 621015 621197 - NC_011666.1 Methylocella silvestris BL2
138 2208980 2209165 - NC_015673.1 Corynebacterium resistens DSM 45100
139 730411 730599 + NZ_CP011494.1 Marinobacter psychrophilus
140 1808589 1808777 + NZ_CP021330.1 Maritalea myrionectae
141 1938123 1938269 - NZ_CP022983.1 Cytobacillus kochii
142 504687 504839 - NC_017079.1 Caldilinea aerophila DSM 14535 = NBRC 104270
143 70918 71100 + NZ_LS483403.1 Streptococcus lutetiensis
144 267649 267825 + NZ_CP013195.1 Prevotella enoeca
145 2894237 2894404 - NC_017956.1 Tistrella mobilis KA081020-065
146 364747 364914 + NZ_CP013481.2 Pandoraea apista
147 1157322 1157489 + NZ_CP047385.1 Pandoraea fibrosis
148 1028524 1028709 + NC_017464.1 Ignavibacterium album JCM 16511
149 1669340 1669522 + NZ_CP041694.1 Cellulosimicrobium cellulans
150 3211342 3211539 - NZ_CP025086.1 Methylovirgula ligni
151 1996729 1996896 - NZ_CP022110.1 Nitrospirillum amazonense CBAmc
152 4848979 4849146 - NZ_CP011807.3 Pandoraea faecigallinarum
153 5213427 5213594 - NZ_CP011253.3 Pandoraea oxalativorans
154 5367430 5367597 - NZ_LT906435.1 Pandoraea sputorum
155 3672361 3672558 - NC_011831.1 Chloroflexus aggregans DSM 9485
156 149612 149758 + NC_022524.1 Bacillus infantis NRRL B-14911
157 616173 616373 + NZ_CP024645.1 Rhizobacter gummiphilus
158 3190532 3190702 - NZ_CP042906.1 Hypericibacter terrae
159 3227943 3228104 - NC_014365.1 Desulfarculus baarsii DSM 2075
160 1715208 1715402 + NZ_CP036532.1 Roseitalea porphyridii
161 5795806 5795973 - NZ_CP013480.3 Pandoraea norimbergensis
162 80036 80218 + NZ_CP039457.1 Streptococcus pasteurianus
163 623885 624079 + NZ_CP066802.1 Actinomyces weissii
164 141926 142105 + NZ_CP011930.1 Herbaspirillum seropedicae
165 159277 159456 + NZ_CP013737.1 Herbaspirillum rubrisubalbicans M1
166 181198 181377 + NZ_CP037993.1 Herbaspirillum huttiense
167 3216972 3217148 - NZ_CP054012.1 Parabacteroides distasonis
168 677303 677485 + NZ_CP043405.1 Streptococcus ratti
169 4335302 4335490 - NC_020911.1 Octadecabacter antarcticus 307
170 3742875 3743054 - NZ_CP032489.1 Arachidicoccus soli
171 258444 258626 + NZ_CP053989.1 Niallia circulans
172 878629 878811 + NZ_CP054015.1 Streptococcus gallolyticus
173 3256893 3257069 - NZ_CP069440.1 Phocaeicola coprophilus
174 54445 54600 - NZ_CP018787.1 Oxalobacter formigenes
175 3134475 3134663 - NZ_CP010650.1 Phaeobacter inhibens
176 1469821 1469982 - NZ_CP022684.1 Ketobacter alkanivorans
177 3303150 3303350 - NZ_CP018171.1 Mesorhizobium oceanicum
178 3227228 3227410 + NZ_CP042476.1 Antarcticibacterium arcticum
179 1443550 1443717 - NZ_CP011257.1 Ralstonia mannitolilytica
180 28654 28839 - NZ_CP036523.1 Peptacetobacter hiranonis
181 723529 723711 + NC_015588.1 Isoptericola variabilis 225
182 365632 365802 + NZ_CP011797.1 Reinekea forsetii
183 1602308 1602493 + NZ_CP020612.1 Paracoccus contaminans
184 1874239 1874424 + NZ_CP042829.1 Tepidiforma bonchosmolovskayae
185 3919855 3920043 - NC_020908.1 Octadecabacter arcticus 238
186 654416 654607 + NZ_CP003182.2 Granulibacter bethesdensis CGDNIH4
187 963121 963303 + NZ_CP045529.1 Luteimicrobium xylanilyticum
188 334819 334983 + NZ_AP018933.1 Zymobacter palmae
189 770110 770289 + NZ_CP032364.1 Lachnoanaerobaculum umeaense
190 1841510 1841695 - NZ_CP007035.1 Niabella soli DSM 19437
191 1249918 1250085 + NZ_CP030265.1 Skermanella pratensis
192 275387 275572 + NZ_LR134338.1 Brevibacillus brevis
193 188691 188873 + NZ_CP018258.1 Dehalogenimonas formicexedens
194 4465191 4465373 - NC_009380.1 Salinispora tropica CNB-440
195 2160321 2160506 - NC_008148.1 Rubrobacter xylanophilus DSM 9941
196 1203486 1203665 + NZ_CP015772.1 Niabella ginsenosidivorans
197 2008733 2008918 + NZ_CP044331.1 Methylocystis parvus
198 1269202 1269390 - NZ_LT821227.1 Phoenicibacter congonensis
199 3172246 3172428 - NC_010622.1 Paraburkholderia phymatum STM815
200 1667232 1667411 - NZ_LT906470.1 Veillonella rodentium
201 1609488 1609667 - NZ_AP022321.1 Veillonella nakazawae
202 1666084 1666263 - NZ_LR134375.1 Veillonella dispar
203 1725751 1725930 - NZ_LR778174.1 Veillonella parvula
204 2393612 2393794 + NZ_CP015958.1 Paraburkholderia caribensis
205 3288889 3289071 - NZ_CP026111.1 Paraburkholderia terrae
206 526885 527061 + NC_006526.2 Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821
207 2174875 2175054 + NZ_CP014699.1 Streptococcus pantholopis
208 2019983 2020174 + NZ_CP061205.1 Kordiimonas pumila
209 1827911 1828090 + NC_018010.1 Belliella baltica DSM 15883
210 219199 219381 + NZ_CP048602.1 Halomonas piezotolerans
211 2706294 2706479 - NZ_CP038439.1 Paracoccus liaowanqingii
212 1956883 1957044 - NC_008025.1 Deinococcus geothermalis DSM 11300
213 7656380 7656562 - NC_014666.1 Frankia inefficax
214 3527670 3527837 - NZ_CP068285.1 Ralstonia syzygii subsp. celebesensis
215 307792 307980 + NZ_CP021047.1 Phaeobacter gallaeciensis
216 3448867 3449028 + NZ_CP049037.1 Pseudohalocynthiibacter aestuariivivens
217 2313146 2313322 - NC_015164.1 Phocaeicola salanitronis DSM 18170
218 3150941 3151123 + NZ_CP017561.1 Paraburkholderia sprentiae WSM5005
219 3024299 3024487 - NZ_CP043420.1 Kushneria phosphatilytica
220 698126 698308 - NZ_CP059082.1 Halomonas titanicae
221 551266 551454 + NZ_CP031415.1 Saccharospirillum mangrovi
222 1805743 1805925 - NZ_CP031467.1 Paraburkholderia caffeinilytica
223 1754743 1754919 - NZ_LR134484.1 Gemella haemolysans
224 3510586 3510768 + NZ_CP035495.1 Xylanimonas allomyrinae
225 2080206 2080388 - NZ_CP059560.1 Aromatoleum petrolei
226 2985187 2985369 - NZ_CP009795.1 Burkholderia dolosa AU0158
227 427185 427367 + NZ_CP009832.1 Burkholderia multivorans ATCC BAA-247
228 1005885 1006037 + NZ_CP009727.1 Burkholderia mallei
229 340012 340194 + NZ_CP013398.1 Burkholderia seminalis
230 325150 325332 + NZ_CP013401.1 Burkholderia metallica
231 1626976 1627158 + NZ_CP011503.1 Burkholderia pyrrocinia
232 337503 337685 + NZ_CP013450.1 Burkholderia cenocepacia
233 333528 333710 + NZ_CP045235.1 Burkholderia cepacia
234 330878 331060 + NC_007510.1 Burkholderia lata
235 419905 420087 + NZ_CP013459.1 Burkholderia stagnalis
236 354164 354316 + NZ_CP020737.1 Paraburkholderia acidophila
237 3492811 3492963 - NC_007651.1 Burkholderia thailandensis E264
238 431958 432110 + NZ_CP013414.1 Burkholderia ubonensis
239 2032317 2032469 + NZ_CP008781.1 Burkholderia pseudomallei
240 3828010 3828195 - NZ_CP053562.1 Thioclava electrotropha
241 3698143 3698328 - NZ_CP019437.1 Thioclava nitratireducens
242 4676672 4676854 + NZ_CP042435.1 Panacibacter ginsenosidivorans
243 5806954 5807136 - NC_016609.1 Niastella koreensis GR20-10
244 186526 186702 - NZ_CP046314.1 Gemella morbillorum
245 384569 384724 + NC_014207.1 Methylotenera versatilis 301
246 4505550 4505732 - NC_007951.1 Paraburkholderia xenovorans LB400
247 3684021 3684203 - NZ_CP024934.1 Paraburkholderia graminis
248 1498637 1498819 + NZ_CP022989.1 Paraburkholderia aromaticivorans
249 4066167 4066349 - NC_010681.1 Paraburkholderia phytofirmans PsJN
250 1220342 1220524 + NC_015635.1 Microlunatus phosphovorus NM-1
251 2881730 2881912 - NZ_CP046909.1 Paraburkholderia acidiphila
252 2908666 2908848 - NZ_CP046913.1 Paraburkholderia acidisoli
253 2274503 2274673 - NC_007519.1 Desulfovibrio alaskensis G20
254 2999790 2999972 + NZ_CP066075.1 Paraburkholderia ginsengisoli
255 2595213 2595380 - NZ_CP044117.1 Roseomonas mucosa
256 3558659 3558826 - NZ_CP041636.1 Ferrovibrio terrae
257 3928124 3928306 - NZ_CP065435.1 Halomonas sp. SS10-MC5
258 2506781 2506963 + NZ_CP035900.1 Burkholderia glumae
259 2008803 2008955 + NZ_CP009555.1 Burkholderia oklahomensis C6786
260 376869 377051 + NZ_CP013106.1 Halomonas huangheensis
261 262030 262218 + NZ_CP012160.1 Octadecabacter temperatus
262 1343049 1343225 - NZ_LR134506.1 Porphyromonas cangingivalis
263 516004 516186 - NZ_CP042382.1 Pistricoccus aurantiacus
264 213630 213812 + NZ_AP022843.1 Halomonas hydrothermalis
265 213091 213273 + NZ_CP065135.1 Halomonas venusta
266 361016 361171 - NZ_CP040098.1 Desulfoglaeba alkanexedens ALDC
267 3091948 3092115 - NC_014958.1 Deinococcus maricopensis DSM 21211
268 3701789 3701971 - NZ_CP024941.1 Paraburkholderia terricola
269 542850 543008 + NZ_CP015164.1 Acetobacter ascendens
270 757842 758027 - NZ_CP021323.1 Kushneria konosiri
271 309664 309846 + NZ_CP002580.1 Burkholderia plantarii
272 1502805 1502984 + NZ_CP006828.1 Ornithobacterium rhinotracheale ORT-UMN 88
273 487897 488082 + NC_007963.1 Chromohalobacter salexigens DSM 3043
274 415418 415600 - NZ_CP028136.1 Gramella fulva
275 1027151 1027321 + NZ_CP041352.1 Casimicrobium huifangae
276 968073 968255 + NC_014722.1 Mycetohabitans rhizoxinica HKI 454
277 1011565 1011723 - NZ_CP046908.1 Stappia indica
278 1141002 1141169 + NC_014221.1 Truepera radiovictrix DSM 17093
279 701778 701960 + NC_013530.1 Xylanimonas cellulosilytica DSM 15894
280 3635549 3635731 - NZ_CP021435.1 Halomonas beimenensis
281 139159 139305 + NZ_CP065425.1 Heyndrickxia vini
282 4219135 4219317 + NZ_CP061725.1 Micromonospora craniellae
283 979876 980058 - NZ_CP048812.1 Halomonas socia
284 3292121 3292303 - NC_013521.1 Sanguibacter keddieii DSM 10542
285 1097362 1097538 - NZ_LR699004.1 Phocaeicola dorei
286 383938 384135 + NC_012968.1 Methylotenera mobilis JLW8
287 1491833 1492018 - NZ_CP011390.1 Flavisolibacter tropicus
288 104299 104490 - NZ_CP048630.1 Ancylobacter pratisalsi
289 73291 73473 + NZ_CP018155.1 Tenacibaculum todarodis
290 890447 890605 + NZ_CP042808.1 Acetobacter oryzoeni
291 2515629 2515787 + NC_021991.1 Acetobacter pasteurianus 386B
292 1020461 1020619 + NZ_CP022374.1 Acetobacter oryzifermentans
293 183884 184036 + NZ_CP054624.1 Cupriavidus gilardii
294 1837807 1837983 - NZ_CP034159.1 Kaistella carnis
295 2544095 2544274 - NZ_CP015067.2 Elizabethkingia anophelis
296 3052008 3052190 + NZ_CP007451.1 Draconibacterium orientale
297 243694 243882 - NZ_CP022048.2 Brevundimonas vesicularis
298 3840646 3840822 - NZ_CP015401.2 Bacteroides caecimuris
299 4679423 4679599 - NZ_LN877293.1 Bacteroides fragilis
300 3403385 3403561 - NZ_CP012938.1 Bacteroides ovatus
301 3752288 3752467 - NZ_CP008849.1 Alteromonas australica
302 1496709 1496888 + NC_014375.1 Brevundimonas subvibrioides ATCC 15264
303 2350162 2350338 - NZ_CP014229.1 Desulfovibrio fairfieldensis
304 1752841 1753023 - NZ_CP044548.2 Janibacter melonis
305 3582100 3582279 - NZ_CP036536.1 Salinimonas lutimaris
306 3925508 3925687 - NZ_CP046670.1 Alteromonas mediterranea
307 1126838 1126999 + NZ_CP053015.1 Sphingomonas lacunae
308 4827053 4827235 - NZ_CP045309.1 Micromonospora terminaliae
309 2402478 2402645 - NZ_CP021081.1 Deinococcus ficus
310 136369 136551 + NZ_CP014226.1 Halomonas chromatireducens
311 257277 257459 - NZ_CP029186.1 Flavobacterium album
312 1937053 1937235 + NZ_CP037755.1 Pseudocnuella soli
313 3620913 3621095 - NZ_AP014545.1 Amphritea japonica ATCC BAA-1530
314 3065389 3065550 + NC_019793.1 Deinococcus peraridilitoris DSM 19664
315 4438479 4438658 + NZ_CP019038.1 Massilia putida
316 2344877 2345059 - NC_013223.1 Desulfohalobium retbaense DSM 5692
317 2812529 2812708 + NZ_CP052766.1 Alteromonas pelagimontana
318 1092900 1093076 - NC_009614.1 Phocaeicola vulgatus ATCC 8482
319 952894 953073 + NZ_CP009240.1 Megasphaera elsdenii 14-14
320 3240606 3240794 - NZ_CP065915.1 Pelagovum pacificum
321 226624 226809 + NZ_CP058670.1 Chryseoglobus indicus
322 1750523 1750690 - NZ_CP014681.1 Kozakia baliensis
323 1757474 1757662 + NZ_CP053086.1 Pelagibacterium halotolerans
324 6020484 6020669 + NC_015510.1 Haliscomenobacter hydrossis DSM 1100
325 1290609 1290773 - NZ_LR134350.1 Actinomyces howellii
326 2970438 2970626 - NZ_CP021404.1 Pacificitalea manganoxidans
327 367303 367479 + NZ_CP034120.1 Glaciecola amylolytica
328 1793337 1793507 - NZ_CP045072.1 Paracoccus kondratievae
329 5926993 5927175 - NZ_AP023355.1 Actinocatenispora thailandica
330 2009255 2009410 - NC_018868.3 Simiduia agarivorans SA1 = DSM 21679
331 1732240 1732404 - NZ_CP020468.1 Actinomyces gaoshouyii
332 720241 720447 + NC_008783.1 Bartonella bacilliformis KC583
333 1527968 1528144 - NZ_CP027234.1 Bacteroides heparinolyticus
334 572280 572444 + NZ_CP053642.1 Actinomyces marmotae
335 1926065 1926223 + NC_008554.1 Syntrophobacter fumaroxidans MPOB
336 867785 867970 - NC_016751.1 Marinitoga piezophila KA3
337 4327293 4327445 - NZ_CP017754.1 Cupriavidus malaysiensis
338 6174315 6174497 - NC_014391.1 Micromonospora aurantiaca ATCC 27029
339 2212918 2213082 - NC_012982.1 Hirschia baltica ATCC 49814
340 3134440 3134619 + NZ_CP034759.1 Litorilituus sediminis
341 5609639 5609821 - NZ_CP022464.2 Enterocloster bolteae
342 157505 157690 - NZ_LN606600.1 Acetobacter senegalensis
343 2797961 2798143 - NZ_CP051884.1 Cellulomonas taurus
344 1427976 1428155 + NC_011144.1 Phenylobacterium zucineum HLK1
345 1137946 1138122 - NC_017045.1 Riemerella anatipestifer ATCC 11845 = DSM 15868
346 1472119 1472298 + NC_013222.1 Robiginitalea biformata HTCC2501
347 3507240 3507410 - NZ_CP036422.1 Halioglobus maricola
348 2456334 2456501 + NC_016629.1 Desulfocurvibacter africanus subsp. africanus str. Walvis Bay
349 1717811 1717987 - NZ_LR134503.1 Kaistella jeonii
350 2454069 2454230 + NZ_CP072133.1 Pseudoalteromonas xiamenensis
351 2795042 2795224 - NZ_CP029640.1 Paraburkholderia dokdonella
352 1722099 1722281 - NZ_CP014209.1 Isoptericola dokdonensis DS-3
353 663636 663818 + NC_017093.1 Actinoplanes missouriensis 431
354 593880 594062 - NZ_CP031188.1 Flavobacterium arcticum
355 1728720 1728902 - NZ_CP061813.1 Polaribacter haliotis
356 3300580 3300762 - NZ_CP043869.1 Neptunomonas concharum
357 2807562 2807744 + NZ_CP018153.1 Gramella salexigens
358 2952133 2952315 - NZ_CP049134.1 Paraburkholderia tropica
359 176439 176621 + NZ_CP022272.1 Shewanella marisflavi
360 187746 187928 + NC_009092.1 Shewanella loihica PV-4
361 3122657 3122839 - NZ_CP066049.1 Actinomyces naeslundii
362 1132894 1133067 - NZ_HG965802.1 Bartonella henselae
363 1364664 1364840 + NC_014933.1 Bacteroides helcogenes P 36-108
364 2991390 2991572 + NZ_CP047156.1 Epidermidibacterium keratini
365 672641 672817 - NZ_CP040530.1 Bacteroides thetaiotaomicron
366 3418455 3418637 + NZ_LR134477.1 Actinomyces viscosus
367 907554 907724 + NZ_CP018911.1 Glycocaulis alkaliphilus
368 704832 705011 - NC_014934.1 Cellulophaga algicola DSM 14237
369 2762862 2763026 - NZ_CP039292.1 Actinomyces procaprae
370 2541472 2541657 + NZ_CP021358.1 Kushneria marisflavi
371 3661860 3662042 + NZ_CP044344.1 Nocardioides cynanchi
372 8293453 8293635 + NZ_AP022870.1 Phytohabitans flavus
373 826548 826730 - NZ_CP017774.1 Flavobacterium commune
374 933948 934109 + NZ_LR134378.1 Lautropia mirabilis
375 1971433 1971615 + NZ_CP018139.1 Halomonas aestuarii
376 4635639 4635821 - NZ_CP031455.1 Streptomyces olivoreticuli subsp. olivoreticuli
377 791043 791222 - NZ_CP025938.1 Tamlana carrageenivorans
378 862883 863065 - NZ_CP054494.1 Flavobacterium columnare
379 2218548 2218700 + NZ_CP020046.1 Thiomonas intermedia
380 342109 342279 + NZ_CP061202.1 Rhodobacter capsulatus
381 230583 230762 + NZ_CP069213.1 Shewanella litorisediminis
382 260424 260603 + NC_008700.1 Shewanella amazonensis SB2B
383 4419575 4419754 + NZ_CP020373.1 Shewanella khirikhana
384 4673706 4673888 - NZ_CP046378.1 Shewanella algae
385 5773845 5773994 - NZ_CP015136.1 Luteitalea pratensis
386 1380173 1380349 - NZ_CP027231.1 Bacteroides zoogleoformans
387 2948690 2948872 - NC_014151.1 Cellulomonas flavigena DSM 20109
388 171418 171600 - NZ_CP028811.1 Flavobacterium magnum
389 645018 645206 + NZ_AP018724.1 Sulfurivermis fontis
390 2450954 2451124 - NC_014844.1 Pseudodesulfovibrio aespoeensis Aspo-2
391 2075547 2075723 - NC_010729.1 Porphyromonas gingivalis ATCC 33277
392 411596 411781 + NZ_CP014782.1 Shewanella psychrophila
393 1944838 1945020 + NZ_LT906449.1 Capnocytophaga haemolytica
394 5873217 5873393 + NZ_CP048113.1 Chitinophaga agri
395 669283 669465 + NC_017025.1 Flavobacterium indicum GPTSA100-9 = DSM 17447
396 2269585 2269764 - NZ_CP019288.1 Kordia antarctica
397 2014149 2014346 - NZ_CP007514.1 Rubrobacter radiotolerans
398 292864 293046 + NC_014532.2 Halomonas elongata DSM 2581
399 1182854 1183036 + NZ_CP017688.1 Flavobacterium crassostreae
400 223533 223721 - NZ_CP015421.1 Rhodovulum sulfidophilum
401 1973650 1973835 + NC_013132.1 Chitinophaga pinensis DSM 2588
402 425714 425890 - NC_015501.1 Porphyromonas asaccharolytica DSM 20707
403 159850 160029 + NZ_CP041666.1 Radiobacillus deserti
404 40541 40726 + NZ_CP023501.1 Weissella paramesenteroides
405 973819 974001 + NZ_CP039291.1 Cellulomonas shaoxiangyii
406 1980258 1980437 + NZ_LT906465.1 Chryseobacterium taklimakanense
407 872254 872421 - NZ_CP032630.1 Protaetiibacter intestinalis
408 853583 853753 - NZ_CP015093.1 Salipiger abyssi
409 399071 399253 - NC_009441.1 Flavobacterium johnsoniae UW101
410 1117446 1117634 - NZ_CP030239.1 Paracoccus mutanolyticus
411 3679889 3680068 - NZ_AP023213.1 Citrifermentans bremense
412 2756503 2756691 - NZ_LN832559.1 Paracoccus aminovorans
413 1658389 1658559 - NZ_CP025583.1 Paracoccus jeotgali
414 640046 640234 - NZ_CP024422.1 Paracoccus yeei
415 3310286 3310474 - NC_022041.1 Paracoccus aminophilus JCM 7686
416 1106100 1106279 + NC_011146.1 Citrifermentans bemidjiense Bem
417 1698540 1698731 - NZ_CP011402.1 Denitrobacterium detoxificans
418 1115293 1115475 + NC_015514.1 Cellulomonas fimi ATCC 484
419 3552769 3552951 - NC_016109.1 Kitasatospora setae KM-6054
420 3423884 3424066 + NZ_CP041783.1 Shewanella donghaensis
421 390917 391099 + NZ_CP029347.1 Saliniradius amylolyticus
422 1899836 1899991 + NZ_CP038033.1 Nitrosococcus wardiae
423 2330339 2330527 + NZ_CP017705.1 Brevibacillus laterosporus DSM 25
424 4381490 4381672 + NZ_AP022871.1 Phytohabitans suffuscus
425 2061821 2061991 - NZ_CP025430.1 Paracoccus zhejiangensis
426 259841 260020 + NZ_CP016786.1 Clostridium isatidis
427 2849797 2849973 - NZ_LT608328.1 Petrimonas mucosa
428 2434742 2434924 + NZ_CP016907.1 Flavobacterium anhuiense
429 2353546 2353728 + NZ_CP043612.1 Flavobacterium nitrogenifigens
430 406606 406788 - NZ_CP029255.1 Flavobacterium crocinum
431 162931 163113 - NZ_CP029187.1 Flavobacterium pallidum
432 191633 191815 - NZ_CP017479.1 Flavobacterium gilvum
433 1995564 1995740 + NZ_CP007034.1 Barnesiella viscericola DSM 18177
434 874162 874344 + NZ_CP019352.1 Lacinutrix venerupis
435 243686 243865 - NZ_CP009976.1 Cellulophaga baltica 18
436 1508290 1508472 - NC_013385.1 Ammonifex degensii KC4
437 2323731 2323913 + NC_020304.1 Desulfocapsa sulfexigens DSM 10523
438 2472063 2472257 - NZ_LR134379.1 Slackia heliotrinireducens
439 3467884 3468066 - NZ_CP010817.1 Myroides profundi
440 2007296 2007478 + NZ_CP020919.1 Flavobacterium kingsejongi
441 1676571 1676753 + NZ_CP042831.1 Flavobacterium alkalisoli
442 1968330 1968512 + NZ_CP061703.1 Mesoflavibacter profundi
443 2432714 2432893 + NC_015167.1 Cellulophaga lytica DSM 7489
444 2415915 2416100 - NZ_CP021255.1 Desulfobulbus oralis
445 1697604 1697783 + NZ_CP041637.1 Formosa sediminum
446 2012276 2012422 - NC_015436.1 Sphaerochaeta coccoides DSM 17374
447 4125534 4125704 + NZ_LT907975.1 Pseudodesulfovibrio profundus
448 2049166 2049348 + NZ_CP039934.1 Myroides fluvii
++ More..
Neighborhood Conservation Analysis
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Conservation Analysis
Neighborhood Representative Chosen(Species): NC_006461.1
Sr.No. Domain Co-occurrence Frequency No. of species in which domain occurs with smORF Median distance b/w smORF and domain bearing ORFs Orientation relative to smORF PFAM Information
1 PF00344.22 0.97 434 482.0 same-strand SecY
2 PF00828.21 0.98 438 18.0 same-strand Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A
3 PF03719.17 1.0 447 13 same-strand Ribosomal protein S5, C-terminal domain
4 PF00333.22 1.0 448 13.0 same-strand Ribosomal protein S5, N-terminal domain
5 PF00861.24 1.0 447 548 same-strand Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast
6 PF00347.25 1.0 447 935 same-strand Ribosomal protein L6
7 PF00410.21 1.0 447 1500 same-strand Ribosomal protein S8
8 PF00253.23 0.94 421 1934 same-strand Ribosomal protein S14p/S29e
++ More..