Result : P73882
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | Uncharacterized protein ssl0461 |
| NCBI Accession ID | BA000022.2 |
| Organism | Synechocystis sp. (strain PCC 6803 / Kazusa) |
| Left | 1515351 |
| Right | 1515602 |
| Strand | - |
| Nucleotide Sequence | GTGAGTTGCCGACGGTTGTCAACTTCAGGAGTATTGTCCATGTCCGTCCAAAACCTGAGCAAACAAGATGTAGCTGCACTCACTGCCGAGGATGTGGCCCAATTGGCCCAACGGCTGGAAAACGATGATTACACCGATGCTTTTGAAGGGCTGAGGGATTGGCATCTCCTACGGGCGATCGCCTTTCAGCGGGAAGACTTGGCGGAACCCTATCTTTACCTGCTGGATAATGAGACCTATGACGAAGCTTAA |
| Sequence | MSCRRLSTSGVLSMSVQNLSKQDVAALTAEDVAQLAQRLENDDYTDAFEGLRDWHLLRAIAFQREDLAEPYLYLLDNETYDEA |
| Source of smORF | Swiss-Prot |
| Function | The ORF matches to the profile of pfam10742. Profile Description: Protein of unknown function (DUF2555). This family is conserved in Cyanobacteria. The function is not known. |
| Pubmed ID | 8905231 |
| Domain | CDD:402395 |
| Functional Category | Others |
| Uniprot ID | P73882 |
| ORF Length (Amino Acid) | 83 |
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| Conservation Analysis |
No. of Species: 27
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 1542663 | 1542875 | + | NC_014501.1 | Gloeothece verrucosa PCC 7822 |
| 2 | 1645065 | 1645277 | + | NC_019689.1 | Pleurocapsa sp. PCC 7327 |
| 3 | 3380176 | 3380388 | - | NC_019748.1 | Stanieria cyanosphaera PCC 7437 |
| 4 | 3215982 | 3216194 | + | NC_019753.1 | Crinalium epipsammum PCC 9333 |
| 5 | 3816323 | 3816535 | - | NC_011729.1 | Gloeothece citriformis PCC 7424 |
| 6 | 2483725 | 2483937 | - | NC_010296.1 | Microcystis aeruginosa NIES-843 |
| 7 | 1615634 | 1615846 | + | NZ_CP024785.1 | Nostoc flagelliforme CCNUN1 |
| 8 | 807398 | 807610 | + | NZ_CP054698.1 | Nostoc edaphicum CCNP1411 |
| 9 | 2603887 | 2604099 | - | NC_014248.1 | 'Nostoc azollae' 0708 |
| 10 | 437564 | 437776 | + | NC_019771.1 | Anabaena cylindrica PCC 7122 |
| 11 | 7488378 | 7488590 | + | NC_010628.1 | Nostoc punctiforme PCC 73102 |
| 12 | 6074905 | 6075117 | + | NZ_CP031941.1 | Nostoc sphaeroides |
| 13 | 79663 | 79875 | + | NZ_CP060822.1 | Cylindrospermopsis curvispora GIHE-G1 |
| 14 | 895763 | 895975 | + | NC_019751.1 | Calothrix sp. PCC 6303 |
| 15 | 1780392 | 1780604 | + | NC_019729.1 | Oscillatoria nigro-viridis PCC 7112 |
| 16 | 3318446 | 3318658 | + | NC_019695.1 | Chroococcidiopsis thermalis PCC 7203 |
| 17 | 3494405 | 3494617 | + | NC_019776.1 | Cyanobacterium aponinum PCC 10605 |
| 18 | 4391507 | 4391713 | - | NZ_AP014638.1 | Leptolyngbya boryana IAM M-101 |
| 19 | 6058687 | 6058932 | - | NZ_CP047242.1 | Trichormus variabilis 0441 |
| 20 | 910655 | 910867 | + | NC_019693.1 | Oscillatoria acuminata PCC 6304 |
| 21 | 1914117 | 1914329 | - | NZ_CP021983.2 | Halomicronema hongdechloris C2206 |
| 22 | 1122523 | 1122738 | + | NZ_CP018092.1 | Synechococcus lividus PCC 6715 |
| 23 | 1784703 | 1784915 | - | NZ_CP042326.1 | Euhalothece natronophila Z-M001 |
| 24 | 2558821 | 2559036 | - | NZ_AP018202.1 | Thermostichus vulcanus NIES-2134 |
| 25 | 2581407 | 2581622 | - | NC_004113.1 | Thermosynechococcus vestitus BP-1 |
| 26 | 1015086 | 1015298 | - | NC_019780.1 | Dactylococcopsis salina PCC 8305 |
| 27 | 117347 | 117559 | + | NC_009925.1 | Acaryochloris marina MBIC11017 |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_019753.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF04127.17 | 0.74 | 20 | 76.5 | same-strand | DNA / pantothenate metabolism flavoprotein |
| 2 | PF02441.21 | 0.74 | 20 | 76.5 | same-strand | Flavoprotein |
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