Protein Information |
Information Type | Description |
---|---|
Protein name | UPF0367 protein ssl1972 |
NCBI Accession ID | BA000022.2 |
Organism | Synechocystis sp. (strain PCC 6803 / Kazusa) |
Left | 390353 |
Right | 390634 |
Strand | - |
Nucleotide Sequence | ATGATCAGCATTGATTTGACCCTTAAATATTCCCCCATGCCCGTGTCCGTACAGCGCAAGGAAAAGGATGGGGCGGAAGCACTCTATCAGACCATTGTCACTGCCATGCAGGGCGATCGCCCCCAAGTGTTGGAACTCACCTGTGAAAAGCAGACGGAGAAAAAGGTGGCCATTATGAGCGATCAGATTAGTGCGGTCATTGTTTCGGAGAAAGATGGTGCCGCCTCAGCGGGGAAAGTGCCGGGTTTTGCCGCCTTGGGCCAAATTGTTAATCAAGGTTAA |
Sequence | MISIDLTLKYSPMPVSVQRKEKDGAEALYQTIVTAMQGDRPQVLELTCEKQTEKKVAIMSDQISAVIVSEKDGAASAGKVPGFAALGQIVNQG |
Source of smORF | Swiss-Prot |
Function | The ORF matches to the profile of PRK13683. Profile Description: hypothetical protein; Provisional |
Pubmed ID | 8905231 9298645 |
Domain | CDD:184240 |
Functional Category | Others |
Uniprot ID | P72925 |
ORF Length (Amino Acid) | 93 |
Conservation Analysis |
Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
---|---|---|---|---|---|
1 | 1712617 | 1712886 | - | NC_010296.1 | Microcystis aeruginosa NIES-843 |
2 | 641625 | 641894 | + | NC_019689.1 | Pleurocapsa sp. PCC 7327 |
3 | 1696781 | 1697041 | + | NZ_CP042326.1 | Euhalothece natronophila Z-M001 |
4 | 1516125 | 1516388 | + | NC_019748.1 | Stanieria cyanosphaera PCC 7437 |
5 | 1887846 | 1888103 | + | NC_019780.1 | Dactylococcopsis salina PCC 8305 |
6 | 2165714 | 2165986 | - | NC_019776.1 | Cyanobacterium aponinum PCC 10605 |
7 | 3543111 | 3543380 | - | NC_019729.1 | Oscillatoria nigro-viridis PCC 7112 |
8 | 6016752 | 6017021 | + | NC_014501.1 | Gloeothece verrucosa PCC 7822 |
9 | 2048351 | 2048614 | - | NC_019753.1 | Crinalium epipsammum PCC 9333 |
10 | 1871264 | 1871533 | + | NC_019695.1 | Chroococcidiopsis thermalis PCC 7203 |
11 | 2299029 | 2299307 | - | NC_019693.1 | Oscillatoria acuminata PCC 6304 |
Neighborhood Conservation Analysis |
Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
---|---|---|---|---|---|---|
1 | PF05991.13 | 0.73 | 8 | 837.5 | same-strand | YacP-like NYN domain |
2 | PF00005.29 | 1.0 | 11 | 61 | same-strand | ABC transporter |
3 | PF00124.21 | 0.73 | 8 | 308.0 | opposite-strand | Photosynthetic reaction centre protein |