Result : P72925
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | UPF0367 protein ssl1972 |
| NCBI Accession ID | BA000022.2 |
| Organism | Synechocystis sp. (strain PCC 6803 / Kazusa) |
| Left | 390353 |
| Right | 390634 |
| Strand | - |
| Nucleotide Sequence | ATGATCAGCATTGATTTGACCCTTAAATATTCCCCCATGCCCGTGTCCGTACAGCGCAAGGAAAAGGATGGGGCGGAAGCACTCTATCAGACCATTGTCACTGCCATGCAGGGCGATCGCCCCCAAGTGTTGGAACTCACCTGTGAAAAGCAGACGGAGAAAAAGGTGGCCATTATGAGCGATCAGATTAGTGCGGTCATTGTTTCGGAGAAAGATGGTGCCGCCTCAGCGGGGAAAGTGCCGGGTTTTGCCGCCTTGGGCCAAATTGTTAATCAAGGTTAA |
| Sequence | MISIDLTLKYSPMPVSVQRKEKDGAEALYQTIVTAMQGDRPQVLELTCEKQTEKKVAIMSDQISAVIVSEKDGAASAGKVPGFAALGQIVNQG |
| Source of smORF | Swiss-Prot |
| Function | The ORF matches to the profile of PRK13683. Profile Description: hypothetical protein; Provisional |
| Pubmed ID | 8905231 9298645 |
| Domain | CDD:184240 |
| Functional Category | Others |
| Uniprot ID | P72925 |
| ORF Length (Amino Acid) | 93 |
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| Conservation Analysis |
No. of Species: 11
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 1712617 | 1712886 | - | NC_010296.1 | Microcystis aeruginosa NIES-843 |
| 2 | 641625 | 641894 | + | NC_019689.1 | Pleurocapsa sp. PCC 7327 |
| 3 | 1696781 | 1697041 | + | NZ_CP042326.1 | Euhalothece natronophila Z-M001 |
| 4 | 1516125 | 1516388 | + | NC_019748.1 | Stanieria cyanosphaera PCC 7437 |
| 5 | 1887846 | 1888103 | + | NC_019780.1 | Dactylococcopsis salina PCC 8305 |
| 6 | 2165714 | 2165986 | - | NC_019776.1 | Cyanobacterium aponinum PCC 10605 |
| 7 | 3543111 | 3543380 | - | NC_019729.1 | Oscillatoria nigro-viridis PCC 7112 |
| 8 | 6016752 | 6017021 | + | NC_014501.1 | Gloeothece verrucosa PCC 7822 |
| 9 | 2048351 | 2048614 | - | NC_019753.1 | Crinalium epipsammum PCC 9333 |
| 10 | 1871264 | 1871533 | + | NC_019695.1 | Chroococcidiopsis thermalis PCC 7203 |
| 11 | 2299029 | 2299307 | - | NC_019693.1 | Oscillatoria acuminata PCC 6304 |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_019689.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF05991.13 | 0.73 | 8 | 837.5 | same-strand | YacP-like NYN domain |
| 2 | PF00005.29 | 1.0 | 11 | 61 | same-strand | ABC transporter |
| 3 | PF00124.21 | 0.73 | 8 | 308.0 | opposite-strand | Photosynthetic reaction centre protein |
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