Result : P71388
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | Mu-like prophage FluMu protein C |
| NCBI Accession ID | L42023.1 |
| Organism | Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) |
| Left | 1569082 |
| Right | 1569300 |
| Strand | + |
| Nucleotide Sequence | ATGGCTCACTATTTTGGCGGTAAGTCGTTTTATCTGCCCGCAGGTGATAAAATCAAAGAAGCCTTACGAGATGCACAAATTTATCAAGAATTCAACGGTAAGAATGTACCTGACCTAATAAAAAAATACCGATTGTCAGAAAGCACAATTTATGCGATCTTACGCAATCAACGAACGCTTCAAAGAAAGCGACATCAGATGGATTTTAATTTTAGTTAG |
| Sequence | MAHYFGGKSFYLPAGDKIKEALRDAQIYQEFNGKNVPDLIKKYRLSESTIYAILRNQRTLQRKRHQMDFNFS |
| Source of smORF | Swiss-Prot |
| Function | Required for transcription of the phage late genes. {ECO:0000250}. |
| Pubmed ID | 7542800 |
| Domain | |
| Functional Category | DNA-binding |
| Uniprot ID | P71388 |
| ORF Length (Amino Acid) | 72 |
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| Conservation Analysis |
No. of Species: 5
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 453961 | 454200 | - | NZ_CP015425.1 | [Haemophilus] ducreyi |
| 2 | 512221 | 512439 | + | NZ_LT906463.1 | Haemophilus pittmaniae |
| 3 | 2395001 | 2395231 | - | NZ_CP012621.1 | Zobellella denitrificans |
| 4 | 2488916 | 2489146 | + | NZ_CP012621.1 | Zobellella denitrificans |
| 5 | 803869 | 804072 | + | NC_012691.1 | Tolumonas auensis DSM 9187 |
| 6 | 1370390 | 1370587 | + | NZ_AP021889.1 | Thiosulfatimonas sediminis |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_CP015425.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF01258.19 | 0.8 | 4 | 1430.0 | same-strand | Prokaryotic dksA/traR C4-type zinc finger |
| 2 | PF06252.14 | 0.8 | 4 | 394 | same-strand | Protein of unknown function (DUF1018) |
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