Protein Information |
Information Type | Description |
---|---|
Protein name | Mu-like prophage FluMu protein C |
NCBI Accession ID | L42023.1 |
Organism | Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) |
Left | 1569082 |
Right | 1569300 |
Strand | + |
Nucleotide Sequence | ATGGCTCACTATTTTGGCGGTAAGTCGTTTTATCTGCCCGCAGGTGATAAAATCAAAGAAGCCTTACGAGATGCACAAATTTATCAAGAATTCAACGGTAAGAATGTACCTGACCTAATAAAAAAATACCGATTGTCAGAAAGCACAATTTATGCGATCTTACGCAATCAACGAACGCTTCAAAGAAAGCGACATCAGATGGATTTTAATTTTAGTTAG |
Sequence | MAHYFGGKSFYLPAGDKIKEALRDAQIYQEFNGKNVPDLIKKYRLSESTIYAILRNQRTLQRKRHQMDFNFS |
Source of smORF | Swiss-Prot |
Function | Required for transcription of the phage late genes. {ECO:0000250}. |
Pubmed ID | 7542800 |
Domain | |
Functional Category | DNA-binding |
Uniprot ID | P71388 |
ORF Length (Amino Acid) | 72 |
Conservation Analysis |
Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
---|---|---|---|---|---|
1 | 453961 | 454200 | - | NZ_CP015425.1 | [Haemophilus] ducreyi |
2 | 512221 | 512439 | + | NZ_LT906463.1 | Haemophilus pittmaniae |
3 | 2395001 | 2395231 | - | NZ_CP012621.1 | Zobellella denitrificans |
4 | 2488916 | 2489146 | + | NZ_CP012621.1 | Zobellella denitrificans |
5 | 803869 | 804072 | + | NC_012691.1 | Tolumonas auensis DSM 9187 |
6 | 1370390 | 1370587 | + | NZ_AP021889.1 | Thiosulfatimonas sediminis |
Neighborhood Conservation Analysis |
Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
---|---|---|---|---|---|---|
1 | PF01258.19 | 0.8 | 4 | 1430.0 | same-strand | Prokaryotic dksA/traR C4-type zinc finger |
2 | PF06252.14 | 0.8 | 4 | 394 | same-strand | Protein of unknown function (DUF1018) |