* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_000964.3
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF18801.3
|
1.0
|
5
|
-16
|
same-strand
|
response regulator aspartate phosphatase H, N terminal
|
2
|
PF13424.8
|
1.0
|
5
|
-16
|
same-strand
|
Tetratricopeptide repeat
|
3
|
PF00491.23
|
0.6
|
3
|
131
|
opposite-strand
|
Arginase family
|
4
|
PF01564.19
|
0.6
|
3
|
1065
|
opposite-strand
|
Spermine/spermidine synthase domain
|
5
|
PF17284.4
|
0.6
|
3
|
1065
|
opposite-strand
|
Spermidine synthase tetramerisation domain
|
6
|
PF00912.24
|
0.6
|
3
|
2097
|
same-strand
|
Transglycosylase
|
7
|
PF00905.24
|
0.6
|
3
|
2097
|
same-strand
|
Penicillin binding protein transpeptidase domain
|
8
|
PF08741.12
|
0.6
|
3
|
4780
|
opposite-strand
|
YwhD family
|
++ More..