* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_CP034943.1
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF05532.14
|
1.0
|
9
|
3987
|
same-strand
|
CsbD-like
|
2
|
PF18801.3
|
1.0
|
9
|
2132
|
same-strand
|
response regulator aspartate phosphatase H, N terminal
|
3
|
PF06463.15
|
1.0
|
9
|
904
|
same-strand
|
Molybdenum Cofactor Synthesis C
|
4
|
PF04055.23
|
1.0
|
9
|
904
|
same-strand
|
Radical SAM superfamily
|
5
|
PF02634.17
|
1.0
|
9
|
101
|
same-strand
|
FdhD/NarQ family
|
6
|
PF00092.30
|
1.0
|
9
|
601.0
|
same-strand
|
von Willebrand factor type A domain
|
7
|
PF13519.8
|
1.0
|
9
|
601.0
|
same-strand
|
von Willebrand factor type A domain
|
8
|
PF08486.12
|
1.0
|
9
|
2162
|
same-strand
|
Stage II sporulation protein
|
9
|
PF00275.22
|
1.0
|
9
|
3389
|
same-strand
|
EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
|
10
|
PF08680.12
|
1.0
|
9
|
4733
|
same-strand
|
TATA-box binding
|
11
|
PF13176.8
|
0.67
|
6
|
2132.0
|
same-strand
|
Tetratricopeptide repeat
|
++ More..