* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_CP011104.1
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF09621.12
|
1.0
|
5
|
3178
|
same-strand
|
Type III secretion system regulator (LcrR)
|
2
|
PF00771.22
|
1.0
|
5
|
1059
|
same-strand
|
FHIPEP family
|
3
|
PF13428.8
|
0.8
|
4
|
733.0
|
same-strand
|
Tetratricopeptide repeat
|
4
|
PF09474.12
|
1.0
|
5
|
365
|
same-strand
|
Type III secretion system YscX (type III YscX)
|
5
|
PF07201.13
|
0.8
|
4
|
-19.0
|
same-strand
|
HrpJ-like domain
|
6
|
PF00006.27
|
1.0
|
5
|
1049
|
opposite-strand
|
ATP synthase alpha/beta family, nucleotide-binding domain
|
7
|
PF18269.3
|
1.0
|
5
|
1049
|
opposite-strand
|
T3SS EscN ATPase C-terminal domain
|
8
|
PF02874.25
|
1.0
|
5
|
1049
|
opposite-strand
|
ATP synthase alpha/beta family, beta-barrel domain
|
9
|
PF07321.14
|
1.0
|
5
|
2368
|
opposite-strand
|
Type III secretion protein YscO
|
10
|
PF01052.22
|
1.0
|
5
|
4205
|
opposite-strand
|
Type III flagellar switch regulator (C-ring) FliN C-term
|
++ More..