* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_CP013984.1
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF02600.18
|
1.0
|
2
|
3851.5
|
same-strand
|
Disulfide bond formation protein DsbB
|
2
|
PF13704.8
|
1.0
|
2
|
2586.5
|
same-strand
|
Glycosyl transferase family 2
|
3
|
PF00085.22
|
1.0
|
2
|
2173.5
|
same-strand
|
Thioredoxin
|
4
|
PF13098.8
|
1.0
|
2
|
2173.5
|
same-strand
|
Thioredoxin-like domain
|
5
|
PF13192.8
|
1.0
|
2
|
2173.5
|
same-strand
|
Thioredoxin domain
|
6
|
PF00664.25
|
1.0
|
2
|
58.0
|
same-strand
|
ABC transporter transmembrane region
|
7
|
PF03412.17
|
1.0
|
2
|
58.0
|
same-strand
|
Peptidase C39 family
|
8
|
PF00005.29
|
1.0
|
2
|
58.0
|
same-strand
|
ABC transporter
|
9
|
PF00817.22
|
1.0
|
2
|
717.0
|
same-strand
|
impB/mucB/samB family
|
10
|
PF11799.10
|
1.0
|
2
|
717.0
|
same-strand
|
impB/mucB/samB family C-terminal domain
|
11
|
PF11798.10
|
1.0
|
2
|
717.0
|
same-strand
|
IMS family HHH motif
|
12
|
PF08863.12
|
1.0
|
2
|
1957.0
|
same-strand
|
YolD-like protein
|
++ More..