Result : P67237
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | UPF0109 protein Mb2932c |
| NCBI Accession ID | LT708304.1 |
| Organism | Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97) |
| Left | 3177833 |
| Right | 3178075 |
| Strand | - |
| Nucleotide Sequence | ATGAGCGCCGTCGTCGTTGACGCTGTTGAGCATCTGGTCCGTGGGATCGTCGACAATCCTGACGATGTCCGGGTAGACCTGATAACCAGTCGGCGGGGGCGCACCGTCGAAGTCCACGTTCATCCAGACGACCTGGGCAAGGTGATCGGTCGTGGGGGACGCACCGCTACCGCATTGCGCACTCTGGTAGCCGGTATCGGTGGCCGCGGTATCCGCGTCGACGTGGTGGACACCGACCAGTAG |
| Sequence | MSAVVVDAVEHLVRGIVDNPDDVRVDLITSRRGRTVEVHVHPDDLGKVIGRGGRTATALRTLVAGIGGRGIRVDVVDTDQ |
| Source of smORF | Swiss-Prot |
| Function | The ORF matches to the profile of cl00098. Profile Description: K homology (KH) RNA-binding domain, type I. Rrp40, also called exosome component 3 (EXOSC3), or ribosomal RNA-processing protein 40, is a non-catalytic component of the RNA exosome complex which has 3'-->5' exoribonuclease activity and participates in a multitude of cellular RNA processing and degradation events. Mutations of EXOSC3 gene are associated with neurological diseases. Members in this subfamily contain a divergent KH domain that lacks the RNA-binding GXXG motif. |
| Pubmed ID | 12788972 28385856 |
| Domain | CDD:412160 |
| Functional Category | RNA-binding |
| Uniprot ID | P67237 |
| ORF Length (Amino Acid) | 80 |
++ More..
| Conservation Analysis |
No. of Species: 387
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 2634869 | 2635111 | + | NZ_AP022570.1 | Mycolicibacterium poriferae |
| 2 | 4903810 | 4904052 | - | NZ_AP022606.1 | Mycobacterium branderi |
| 3 | 3216905 | 3217147 | - | NC_000962.3 | Mycobacterium tuberculosis H37Rv |
| 4 | 3275813 | 3276055 | - | NC_015848.1 | Mycobacterium canettii CIPT 140010059 |
| 5 | 5640427 | 5640669 | + | NZ_AP022577.1 | Mycolicibacterium aubagnense |
| 6 | 782119 | 782361 | - | NZ_AP022568.1 | Mycobacterium simiae |
| 7 | 3953806 | 3954048 | - | NC_016948.1 | Mycobacterium paraintracellulare |
| 8 | 467210 | 467452 | + | NZ_AP022620.1 | Mycolicibacterium anyangense |
| 9 | 3835178 | 3835420 | - | NC_016946.1 | Mycobacterium intracellulare ATCC 13950 |
| 10 | 2539176 | 2539418 | - | NZ_AP022614.1 | Mycobacterium parmense |
| 11 | 2250375 | 2250617 | + | NZ_AP022610.1 | Mycolicibacterium madagascariense |
| 12 | 5686465 | 5686707 | + | NZ_AP022573.1 | Mycobacterium saskatchewanense |
| 13 | 2142736 | 2142978 | + | NZ_LR134356.1 | Mycolicibacterium aurum |
| 14 | 3007143 | 3007385 | - | NZ_AP022581.1 | Mycobacterium lacus |
| 15 | 2451669 | 2451911 | - | NZ_AP022563.1 | Mycolicibacterium duvalii |
| 16 | 282350 | 282592 | + | NZ_AP022603.1 | Mycolicibacterium fallax |
| 17 | 401312 | 401554 | - | NZ_AP022615.1 | Mycobacterium heidelbergense |
| 18 | 1482912 | 1483154 | - | NZ_AP022616.1 | Mycolicibacterium phocaicum |
| 19 | 2261654 | 2261896 | + | NZ_CP062008.1 | Mycolicibacterium mucogenicum DSM 44124 |
| 20 | 1457034 | 1457276 | + | NZ_CP011883.2 | Mycobacterium haemophilum DSM 44634 |
| 21 | 1751400 | 1751642 | + | NZ_AP018164.1 | Mycobacterium shigaense |
| 22 | 2267994 | 2268236 | + | NZ_CP025546.1 | Mycobacterium paragordonae |
| 23 | 3681417 | 3681659 | - | NZ_CP023147.1 | Mycobacterium marseillense |
| 24 | 2359789 | 2360031 | + | NZ_AP023396.1 | Nocardia wallacei |
| 25 | 1586039 | 1586281 | + | NZ_AP022613.1 | Mycobacterium conspicuum |
| 26 | 166498 | 166740 | + | NZ_AP022590.1 | Mycobacterium mantenii |
| 27 | 5363908 | 5364150 | + | NC_022663.1 | Mycobacterium kansasii ATCC 12478 |
| 28 | 2470328 | 2470570 | - | NZ_AP022575.1 | Mycobacterium shinjukuense |
| 29 | 1848478 | 1848720 | + | NZ_LR130759.1 | Mycobacterium basiliense |
| 30 | 3565076 | 3565318 | - | NZ_CP009360.4 | Mycobacterium avium subsp. hominissuis |
| 31 | 4770482 | 4770724 | - | NZ_CP020809.1 | Mycobacterium dioxanotrophicus |
| 32 | 25729 | 25971 | + | NZ_AP022569.1 | Mycobacterium cookii |
| 33 | 3145168 | 3145410 | - | NZ_AP022612.1 | Mycolicibacterium confluentis |
| 34 | 4386641 | 4386883 | - | NZ_AP018410.1 | Mycobacterium pseudoshottsii JCM 15466 |
| 35 | 3547996 | 3548238 | + | NZ_CP058277.1 | Mycobacterium marinum |
| 36 | 2337346 | 2337588 | + | NC_008726.1 | Mycolicibacterium vanbaalenii PYR-1 |
| 37 | 1714409 | 1714651 | - | NZ_AP022576.1 | Mycobacterium florentinum |
| 38 | 2158914 | 2159156 | + | NZ_CP011491.1 | Mycolicibacterium vaccae 95051 |
| 39 | 1497895 | 1498137 | - | NZ_AP022593.1 | Mycolicibacterium arabiense |
| 40 | 3357248 | 3357490 | + | NZ_AP022583.1 | Mycobacterium noviomagense |
| 41 | 1733507 | 1733749 | + | NZ_LT906483.1 | Mycolicibacterium thermoresistibile |
| 42 | 4583906 | 4584148 | - | NZ_AP022574.1 | Mycolicibacterium psychrotolerans |
| 43 | 3100636 | 3100878 | + | NZ_AP022595.1 | Mycolicibacterium sarraceniae |
| 44 | 1905276 | 1905518 | + | NZ_AP022561.1 | Mycolicibacterium aichiense |
| 45 | 1808383 | 1808625 | - | NZ_AP022587.1 | Mycobacterium stomatepiae |
| 46 | 4606497 | 4606739 | + | NZ_AP022596.1 | Mycolicibacterium helvum |
| 47 | 456548 | 456790 | + | NZ_AP022582.1 | Mycobacterium seoulense |
| 48 | 3633318 | 3633560 | + | NZ_AP022562.1 | Mycobacterium novum |
| 49 | 2815458 | 2815700 | - | NC_015576.1 | Mycolicibacter sinensis |
| 50 | 5222099 | 5222341 | - | NZ_AP022572.1 | Mycobacterium shottsii |
| 51 | 2187746 | 2187988 | - | NZ_AP022609.1 | Mycolicibacter hiberniae |
| 52 | 2116627 | 2116869 | + | NZ_CP029146.1 | Rhodococcus ruber |
| 53 | 3472546 | 3472788 | - | NZ_CP011530.1 | Mycobacteroides immunogenum |
| 54 | 5820301 | 5820543 | + | NZ_AP022619.1 | Mycobacterium paraseoulense |
| 55 | 1356235 | 1356477 | + | NZ_AP022605.1 | Mycobacterium doricum |
| 56 | 2973069 | 2973311 | - | NZ_CP010271.1 | Mycobacteroides saopaulense |
| 57 | 3040421 | 3040663 | - | NZ_CP024633.1 | Mycobacteroides salmoniphilum |
| 58 | 3175781 | 3176023 | - | NZ_AP018165.1 | [Mycobacterium] stephanolepidis |
| 59 | 3226358 | 3226600 | - | NZ_CP007220.1 | Mycobacteroides chelonae CCUG 47445 |
| 60 | 3271184 | 3271426 | - | NZ_CP014955.1 | Mycobacteroides abscessus |
| 61 | 4303902 | 4304144 | - | NC_006361.1 | Nocardia farcinica IFM 10152 |
| 62 | 2360100 | 2360342 | + | NZ_AP017900.1 | Nocardia seriolae |
| 63 | 2111899 | 2112141 | + | NZ_AP022618.1 | Mycolicibacterium insubricum |
| 64 | 8919968 | 8920210 | + | NZ_CP022088.2 | Nocardia brasiliensis |
| 65 | 4758763 | 4759005 | - | NZ_CP041695.1 | Nocardia otitidiscaviarum |
| 66 | 320157 | 320399 | - | NZ_AP022589.1 | Mycolicibacter minnesotensis |
| 67 | 5275663 | 5275881 | - | NZ_AP022598.1 | Mycolicibacterium parafortuitum |
| 68 | 3402816 | 3403058 | - | NZ_AP024310.1 | Mycobacterium heckeshornense |
| 69 | 4102742 | 4102984 | + | NZ_AP022600.1 | Mycolicibacterium tokaiense |
| 70 | 2116813 | 2117055 | + | NZ_CP027793.1 | Rhodococcus hoagii |
| 71 | 3678679 | 3678921 | + | NZ_CP026746.1 | Nocardia cyriacigeorgica |
| 72 | 5694126 | 5694368 | - | NZ_LR134352.1 | Nocardia asteroides |
| 73 | 2526823 | 2527065 | + | NZ_AP023172.1 | Rhodococcus qingshengii |
| 74 | 4825330 | 4825572 | - | NZ_CP018082.1 | Nocardia mangyaensis |
| 75 | 1081464 | 1081706 | - | NZ_LS483468.1 | Rhodococcus coprophilus |
| 76 | 1553914 | 1554144 | - | NZ_AP022565.1 | Mycolicibacterium alvei |
| 77 | 4327370 | 4327564 | - | NZ_AP022560.1 | Mycolicibacterium moriokaense |
| 78 | 2065279 | 2065521 | + | NZ_LT906450.1 | Rhodococcus rhodochrous |
| 79 | 2489010 | 2489252 | - | NZ_CP048813.1 | Rhodococcus triatomae |
| 80 | 2818842 | 2819036 | - | NZ_AP022617.1 | Mycolicibacterium monacense |
| 81 | 5535829 | 5536023 | + | NZ_AP022567.1 | Mycolicibacterium mageritense |
| 82 | 2503595 | 2503837 | + | NZ_CP022208.1 | Rhodococcus pyridinivorans |
| 83 | 2446209 | 2446403 | + | NZ_CP011269.1 | Mycolicibacterium fortuitum |
| 84 | 5850486 | 5850728 | - | NZ_CP012150.1 | Mycobacterium goodii |
| 85 | 5311747 | 5311941 | - | NZ_AP022579.1 | Mycolicibacterium boenickei |
| 86 | 2588161 | 2588391 | + | NZ_LN831039.1 | Mycolicibacterium smegmatis |
| 87 | 3342229 | 3342435 | + | NZ_CP043474.1 | Mycobacterium grossiae |
| 88 | 1818233 | 1818481 | + | NZ_CP019066.1 | Tsukamurella tyrosinosolvens |
| 89 | 337669 | 337863 | - | NZ_AP022599.1 | Mycolicibacterium pulveris |
| 90 | 1631876 | 1632118 | + | NC_015564.1 | Hoyosella subflava DQS3-9A1 |
| 91 | 1695487 | 1695735 | + | NC_014158.1 | Tsukamurella paurometabola DSM 20162 |
| 92 | 3526248 | 3526490 | + | NZ_AP022588.1 | Mycolicibacterium sediminis |
| 93 | 2433469 | 2433711 | - | NZ_AP022586.1 | Mycolicibacterium litorale |
| 94 | 3172371 | 3172613 | - | NZ_LR134355.1 | Mycolicibacterium chitae |
| 95 | 1047857 | 1048051 | + | NZ_LR026975.1 | Mycolicibacterium hassiacum DSM 44199 |
| 96 | 3705333 | 3705539 | - | NZ_CP045929.1 | Saccharopolyspora coralli |
| 97 | 1956127 | 1956369 | + | NZ_CP027433.1 | Gordonia iterans |
| 98 | 1874077 | 1874271 | + | NZ_CP022521.1 | Actinoalloteichus hoggarensis |
| 99 | 2752033 | 2752239 | - | NZ_LT906469.1 | Mycolicibacter terrae |
| 100 | 2217385 | 2217627 | + | NC_013441.1 | Gordonia bronchialis DSM 43247 |
| 101 | 2083228 | 2083434 | - | NZ_CP061007.1 | Saccharopolyspora spinosa |
| 102 | 3168209 | 3168451 | + | NZ_CP059694.1 | Gordonia rubripertincta |
| 103 | 4421533 | 4421763 | + | NZ_CP016793.1 | Lentzea guizhouensis |
| 104 | 1820657 | 1820899 | + | NZ_CP011853.1 | Gordonia phthalatica |
| 105 | 2261797 | 2262039 | + | NC_016906.1 | Gordonia polyisoprenivorans VH2 |
| 106 | 6787946 | 6788152 | - | NC_009142.1 | Saccharopolyspora erythraea NRRL 2338 |
| 107 | 9505984 | 9506214 | - | NZ_CP034550.1 | Saccharothrix syringae |
| 108 | 8280245 | 8280484 | - | NZ_CP007155.1 | Kutzneria albida DSM 43870 |
| 109 | 6967857 | 6968087 | - | NC_013093.1 | Actinosynnema mirum DSM 43827 |
| 110 | 7974483 | 7974689 | + | NZ_CP031142.1 | Saccharopolyspora pogona |
| 111 | 6823751 | 6823981 | - | NZ_CP023445.1 | Actinosynnema pretiosum |
| 112 | 7858585 | 7858815 | - | NC_019673.1 | Saccharothrix espanaensis DSM 44229 |
| 113 | 1539013 | 1539219 | + | NZ_CP016353.1 | Prauserella marina |
| 114 | 4945130 | 4945372 | - | NZ_CP015235.1 | Rhodococcus fascians D188 |
| 115 | 10022138 | 10022344 | - | NZ_CP012752.1 | Kibdelosporangium phytohabitans |
| 116 | 631140 | 631382 | + | NZ_CP033972.1 | Gordonia insulae |
| 117 | 2916735 | 2916977 | + | NZ_CP027114.1 | Gordonia alkanivorans |
| 118 | 1587043 | 1587237 | + | NZ_CP022752.1 | Actinopolyspora erythraea |
| 119 | 1893394 | 1893636 | - | NZ_CP029543.1 | Mycobacterium leprae |
| 120 | 1975918 | 1976112 | + | NZ_CP016076.1 | Actinoalloteichus fjordicus |
| 121 | 4202103 | 4202339 | - | NC_013757.1 | Geodermatophilus obscurus DSM 43160 |
| 122 | 3453479 | 3453712 | - | NC_013235.1 | Nakamurella multipartita DSM 44233 |
| 123 | 1005173 | 1005379 | + | NC_013159.1 | Saccharomonospora viridis DSM 43017 |
| 124 | 4004988 | 4005194 | - | NZ_CP015163.1 | Amycolatopsis albispora |
| 125 | 268202 | 268411 | - | NZ_CP009312.1 | Lawsonella clevelandensis |
| 126 | 1991434 | 1991664 | - | NC_014168.1 | Segniliparus rotundus DSM 44985 |
| 127 | 6276594 | 6276800 | - | NC_008278.1 | Frankia alni ACN14a |
| 128 | 6682323 | 6682529 | - | NC_021252.1 | Amycolatopsis keratiniphila |
| 129 | 1995186 | 1995392 | + | NZ_CP008953.1 | Amycolatopsis japonica |
| 130 | 6809944 | 6810183 | + | NZ_CP070326.1 | Streptomyces noursei |
| 131 | 2107884 | 2108090 | + | NC_022116.1 | Amycolatopsis mediterranei RB |
| 132 | 5714811 | 5715023 | + | NZ_CP024957.1 | Streptomyces cavourensis |
| 133 | 6170810 | 6171022 | + | NZ_CP020563.1 | Kitasatospora albolonga |
| 134 | 6076760 | 6076999 | + | NZ_CP019457.1 | Streptomyces lydicus |
| 135 | 6019482 | 6019694 | + | NZ_CP070242.1 | Streptomyces californicus |
| 136 | 6076547 | 6076759 | + | NZ_CP020570.1 | Streptomyces violaceoruber |
| 137 | 6710468 | 6710674 | - | NZ_CP016174.1 | Amycolatopsis orientalis |
| 138 | 5894603 | 5894815 | + | NZ_CP013738.1 | Streptomyces globisporus C-1027 |
| 139 | 5078050 | 5078289 | - | NC_015312.1 | Pseudonocardia dioxanivorans CB1190 |
| 140 | 7608841 | 7609098 | - | NC_017093.1 | Actinoplanes missouriensis 431 |
| 141 | 2236451 | 2236663 | - | NC_010572.1 | Streptomyces griseus subsp. griseus NBRC 13350 |
| 142 | 5773465 | 5773704 | + | NZ_CP072931.1 | Streptomyces auratus AGR0001 |
| 143 | 6267218 | 6267457 | + | NZ_CP023691.1 | Streptomyces platensis |
| 144 | 1843294 | 1843506 | - | NZ_CP048882.1 | Streptomyces bathyalis |
| 145 | 5429095 | 5429334 | + | NZ_CP072827.1 | Streptomyces mobaraensis NBRC 13819 = DSM 40847 |
| 146 | 6059462 | 6059674 | + | NC_021985.1 | Streptomyces collinus Tu 365 |
| 147 | 6648049 | 6648261 | + | NZ_CP047020.1 | Streptomyces broussonetiae |
| 148 | 3229312 | 3229524 | - | NZ_CP017248.1 | Streptomyces fodineus |
| 149 | 6083437 | 6083649 | + | NC_021177.1 | Streptomyces fulvissimus DSM 40593 |
| 150 | 4803707 | 4803946 | + | NZ_CP054938.1 | Streptomyces harbinensis |
| 151 | 4803763 | 4803975 | + | NZ_CP017316.1 | Streptomyces rubrolavendulae |
| 152 | 4990019 | 4990231 | + | NZ_CP023696.1 | Streptomyces fradiae ATCC 10745 = DSM 40063 |
| 153 | 2726403 | 2726642 | - | NZ_CP023688.1 | Streptomyces rimosus |
| 154 | 1604212 | 1604424 | - | NZ_CP065253.1 | Streptomyces clavuligerus |
| 155 | 4508067 | 4508306 | - | NC_016582.1 | Streptomyces bingchenggensis BCW-1 |
| 156 | 1973559 | 1973771 | + | NZ_CP016279.1 | Streptomyces griseochromogenes |
| 157 | 2551219 | 2551431 | - | NZ_CP032698.1 | Streptomyces hundungensis |
| 158 | 6525844 | 6526056 | + | NZ_CP027306.1 | Streptomyces atratus |
| 159 | 2665103 | 2665315 | - | NZ_CP011340.1 | Streptomyces pristinaespiralis |
| 160 | 6167101 | 6167313 | + | NZ_CP071839.1 | Streptomyces cyanogenus |
| 161 | 6305722 | 6305934 | + | NZ_CP059991.1 | Streptomyces gardneri |
| 162 | 1938682 | 1938894 | - | NZ_CP034279.1 | Streptomyces ficellus |
| 163 | 5713364 | 5713603 | + | NZ_CP042266.1 | Streptomyces qinzhouensis |
| 164 | 5953311 | 5953550 | + | NZ_CP020700.1 | Streptomyces tsukubensis |
| 165 | 5392719 | 5392931 | + | NZ_CP029254.1 | Streptomyces spongiicola |
| 166 | 7129031 | 7129288 | - | NZ_CP023865.1 | Actinoplanes teichomyceticus ATCC 31121 |
| 167 | 2035864 | 2036076 | - | NZ_CP023702.1 | Streptomyces nitrosporeus |
| 168 | 6682334 | 6682546 | + | NZ_CP022685.1 | Streptomyces formicae |
| 169 | 6395507 | 6395746 | + | NZ_CP020569.1 | Streptomyces gilvosporeus |
| 170 | 5010347 | 5010559 | + | NZ_CP029188.1 | Streptomyces tirandamycinicus |
| 171 | 5745952 | 5746164 | + | NZ_CP023695.1 | Streptomyces alboniger |
| 172 | 5567407 | 5567646 | + | NZ_CP029196.1 | Streptomyces venezuelae |
| 173 | 4523376 | 4523588 | + | NZ_CP032229.1 | Streptomyces seoulensis |
| 174 | 5691045 | 5691257 | + | NZ_CP023703.1 | Streptomyces galilaeus |
| 175 | 5325736 | 5325975 | + | NZ_CP040752.1 | Streptomyces rectiverticillatus |
| 176 | 7934201 | 7934458 | - | NC_022657.1 | Actinoplanes friuliensis DSM 7358 |
| 177 | 6778611 | 6778823 | + | NZ_CP023690.1 | Streptomyces spectabilis |
| 178 | 1787697 | 1787909 | + | NZ_CP051486.1 | Streptomyces pratensis |
| 179 | 2182832 | 2183071 | - | NZ_CP060404.1 | Streptomyces buecherae |
| 180 | 6385635 | 6385835 | + | NZ_CP071139.1 | Streptomyces nojiriensis |
| 181 | 3024226 | 3024438 | - | NZ_CP023699.1 | Streptomyces kanamyceticus |
| 182 | 6725948 | 6726187 | + | NZ_CP031455.1 | Streptomyces olivoreticuli subsp. olivoreticuli |
| 183 | 2239826 | 2240038 | - | NZ_CP022310.1 | Streptomyces calvus |
| 184 | 5858813 | 5859025 | + | NZ_CP031194.1 | Streptomyces paludis |
| 185 | 6265923 | 6266135 | + | NZ_CP023407.1 | Streptomyces fungicidicus |
| 186 | 5405620 | 5405832 | + | NZ_CP021080.1 | Streptomyces pluripotens |
| 187 | 2773595 | 2773807 | - | NZ_CP051006.1 | Streptomyces griseofuscus |
| 188 | 1432396 | 1432596 | + | NZ_CP030862.1 | Streptomyces globosus |
| 189 | 7628419 | 7628631 | + | NZ_CP065050.1 | Streptomyces solisilvae |
| 190 | 5491797 | 5492036 | + | NZ_CP023693.1 | Streptomyces cinereoruber |
| 191 | 6027984 | 6028196 | + | NZ_CP010407.1 | Streptomyces vietnamensis |
| 192 | 2287800 | 2288000 | - | NZ_CP023701.1 | Streptomyces subrutilus |
| 193 | 2696588 | 2696800 | - | NZ_CP034687.1 | Streptomyces griseoviridis |
| 194 | 2556011 | 2556241 | + | NZ_AP023355.1 | Actinocatenispora thailandica |
| 195 | 6427868 | 6428080 | + | NZ_CP015098.1 | Streptomyces qaidamensis |
| 196 | 1952779 | 1952991 | - | NZ_CP023202.1 | Streptomyces xinghaiensis S187 |
| 197 | 2500976 | 2501188 | - | NZ_CP026652.1 | Streptomyces dengpaensis |
| 198 | 5686424 | 5686636 | + | NZ_CP012382.1 | Streptomyces ambofaciens ATCC 23877 |
| 199 | 1471357 | 1471590 | + | NC_009380.1 | Salinispora tropica CNB-440 |
| 200 | 4704378 | 4704590 | + | NZ_CP009922.3 | Streptomyces xiamenensis |
| 201 | 2181772 | 2181972 | - | NZ_CP023692.1 | Streptomyces vinaceus |
| 202 | 7406773 | 7406985 | + | NZ_CP034463.1 | Streptomyces aquilus |
| 203 | 5620915 | 5621127 | + | NZ_CP010849.1 | Streptomyces cyaneogriseus subsp. noncyanogenus |
| 204 | 2530716 | 2530928 | - | NZ_LN831790.1 | Streptomyces leeuwenhoekii |
| 205 | 5886456 | 5886668 | + | NZ_CP063374.1 | Streptomyces chromofuscus |
| 206 | 2936000 | 2936212 | - | NZ_CP030073.1 | Streptomyces cadmiisoli |
| 207 | 2919050 | 2919262 | - | NZ_CP022744.1 | Streptomyces lincolnensis |
| 208 | 7221548 | 7221760 | + | NZ_CP034539.1 | Streptomyces cyaneochromogenes |
| 209 | 9127405 | 9127638 | + | NZ_AP022870.1 | Phytohabitans flavus |
| 210 | 7905144 | 7905356 | - | NZ_CP063373.1 | Streptomyces ferrugineus |
| 211 | 5409667 | 5409879 | + | NZ_CP029043.1 | Streptomyces nigra |
| 212 | 2850787 | 2850999 | - | NZ_CP032427.1 | Streptomyces griseorubiginosus |
| 213 | 5226108 | 5226320 | + | NZ_CP015866.1 | Streptomyces parvulus |
| 214 | 5472599 | 5472811 | + | NZ_AP023439.1 | Streptomyces tuirus |
| 215 | 2988072 | 2988284 | - | NZ_CP045643.1 | Streptomyces fagopyri |
| 216 | 5277748 | 5277981 | + | NZ_AP022871.1 | Phytohabitans suffuscus |
| 217 | 2729508 | 2729720 | - | NZ_AP023440.1 | Streptomyces glomeroaurantiacus |
| 218 | 4757357 | 4757569 | + | NC_016111.1 | Streptomyces cattleya NRRL 8057 = DSM 46488 |
| 219 | 3240044 | 3240256 | - | NC_003155.5 | Streptomyces avermitilis MA-4680 = NBRC 14893 |
| 220 | 6241309 | 6241521 | + | NZ_CP021978.1 | Streptomyces hawaiiensis |
| 221 | 6660486 | 6660698 | + | NZ_CP023694.1 | Streptomyces coeruleorubidus |
| 222 | 1810766 | 1811011 | - | NZ_LR131272.1 | Arthrobacter agilis |
| 223 | 7674902 | 7675141 | + | NZ_CP045096.1 | Streptomyces phaeolivaceus |
| 224 | 2980014 | 2980253 | - | NC_013929.1 | Streptomyces scabiei 87.22 |
| 225 | 4291866 | 4292099 | - | NC_007777.1 | Frankia casuarinae |
| 226 | 1047218 | 1047457 | - | NZ_CP034438.1 | Flaviflexus salsibiostraticola |
| 227 | 230533 | 230766 | + | NZ_CP045309.1 | Micromonospora terminaliae |
| 228 | 1444884 | 1445117 | + | NC_014391.1 | Micromonospora aurantiaca ATCC 27029 |
| 229 | 4846858 | 4847097 | + | NZ_CP031264.1 | Streptacidiphilus bronchialis |
| 230 | 1886142 | 1886375 | + | NZ_CP058322.1 | Micromonospora carbonacea |
| 231 | 3304211 | 3304429 | - | NZ_CP029642.1 | Arthrobacter dokdonellae |
| 232 | 1333980 | 1334183 | - | NZ_CP011005.1 | Psychromicrobium lacuslunae |
| 233 | 3029257 | 3029469 | - | NZ_CP023689.1 | Streptomyces chartreusis |
| 234 | 2551463 | 2551702 | - | NZ_CP023698.1 | Streptomyces viridifaciens |
| 235 | 915173 | 915400 | + | NC_010168.1 | Renibacterium salmoninarum ATCC 33209 |
| 236 | 1718938 | 1719177 | + | NC_013131.1 | Catenulispora acidiphila DSM 44928 |
| 237 | 2660497 | 2660739 | - | NZ_CP068013.1 | Paenarthrobacter ureafaciens |
| 238 | 5767685 | 5767897 | + | NC_016109.1 | Kitasatospora setae KM-6054 |
| 239 | 1103748 | 1103963 | - | NZ_CP061725.1 | Micromonospora craniellae |
| 240 | 1407214 | 1407450 | - | NZ_CP028129.1 | Rathayibacter rathayi |
| 241 | 1710206 | 1710442 | - | NZ_CP015515.1 | Rathayibacter tritici |
| 242 | 3587625 | 3587858 | + | NZ_CP047156.1 | Epidermidibacterium keratini |
| 243 | 1464289 | 1464528 | + | NZ_CP034412.1 | Glutamicibacter creatinolyticus |
| 244 | 2633545 | 2633760 | + | NZ_CP015079.1 | Nocardioides dokdonensis FR1436 |
| 245 | 2399374 | 2399613 | - | NZ_CP033325.1 | Georgenia faecalis |
| 246 | 2171444 | 2171683 | - | NZ_CP013745.1 | Arthrobacter alpinus |
| 247 | 2478216 | 2478452 | - | NZ_CP047180.1 | Rathayibacter festucae |
| 248 | 418247 | 418492 | + | NZ_CP018135.1 | Neomicrococcus aestuarii |
| 249 | 1935171 | 1935407 | - | NZ_CP058670.1 | Chryseoglobus indicus |
| 250 | 1981572 | 1981814 | - | NZ_CP015449.1 | Dietzia lutea |
| 251 | 1771643 | 1771879 | - | NZ_CP047186.1 | Rathayibacter tanaceti |
| 252 | 492389 | 492625 | - | NZ_CP066049.1 | Actinomyces naeslundii |
| 253 | 762950 | 763186 | + | NZ_CP066060.1 | Actinomyces oris |
| 254 | 1136547 | 1136783 | - | NZ_CP028130.1 | Rathayibacter iranicus |
| 255 | 1461295 | 1461504 | - | NC_020990.1 | Streptomyces albidoflavus |
| 256 | 1326595 | 1326831 | - | NZ_LR134477.1 | Actinomyces viscosus |
| 257 | 1840223 | 1840432 | - | NZ_CP031742.1 | Streptomyces koyangensis |
| 258 | 2176391 | 2176627 | - | NZ_CP039292.1 | Actinomyces procaprae |
| 259 | 301604 | 301852 | + | NZ_CP060716.1 | Leucobacter denitrificans |
| 260 | 2155033 | 2155272 | + | NZ_CP032630.1 | Protaetiibacter intestinalis |
| 261 | 1356003 | 1356215 | - | NZ_CP043661.1 | Kribbella qitaiheensis |
| 262 | 1044105 | 1044347 | + | NZ_CP056080.1 | Rothia nasimurium |
| 263 | 603936 | 604175 | + | NZ_CP041091.1 | Nocardioides sambongensis |
| 264 | 5131743 | 5131955 | - | NC_013729.1 | Kribbella flavida DSM 17836 |
| 265 | 1109402 | 1109620 | + | NZ_CP061539.1 | Rothia terrae |
| 266 | 1674347 | 1674589 | + | NZ_CP033081.1 | Glutamicibacter nicotianae |
| 267 | 1826842 | 1827102 | - | NZ_LT985188.1 | Micropruina glycogenica |
| 268 | 134791 | 135030 | + | NZ_CP008802.1 | Actinotignum schaalii |
| 269 | 3175374 | 3175580 | - | NZ_CP059164.1 | Nocardioides ungokensis |
| 270 | 457284 | 457523 | + | NZ_CP035495.1 | Xylanimonas allomyrinae |
| 271 | 2567311 | 2567541 | - | NZ_CP026734.1 | Brevibacterium linens |
| 272 | 616265 | 616504 | - | NZ_LT635457.1 | Actinomyces pacaensis |
| 273 | 2738693 | 2738938 | - | NZ_CP013254.1 | Kocuria flava |
| 274 | 1758407 | 1758628 | - | NC_008578.1 | Acidothermus cellulolyticus 11B |
| 275 | 1048867 | 1049109 | + | NZ_CP012507.1 | Kocuria palustris |
| 276 | 820707 | 820919 | - | NC_009664.2 | Kineococcus radiotolerans SRS30216 = ATCC BAA-149 |
| 277 | 2324866 | 2325093 | + | NC_013947.1 | Stackebrandtia nassauensis DSM 44728 |
| 278 | 643152 | 643349 | + | NZ_CP070228.1 | Arcanobacterium phocisimile |
| 279 | 1555447 | 1555644 | - | NZ_LS483427.1 | Arcanobacterium haemolyticum |
| 280 | 906861 | 907097 | - | NZ_CP040508.1 | Rhodoluna limnophila |
| 281 | 995398 | 995637 | + | NC_012803.1 | Micrococcus luteus NCTC 2665 |
| 282 | 2023822 | 2024058 | + | NZ_CP014228.1 | Actinomyces radicidentis |
| 283 | 417954 | 418196 | + | NZ_CP042260.1 | Glutamicibacter halophytocola |
| 284 | 2328088 | 2328324 | - | NZ_CP071883.1 | Curtobacterium flaccumfaciens pv. flaccumfaciens |
| 285 | 1892226 | 1892462 | - | NZ_CP026949.1 | Mycetocola zhujimingii |
| 286 | 1870783 | 1871019 | - | NZ_CP025227.1 | Actinomyces wuliandei |
| 287 | 1283867 | 1284103 | + | NZ_CP020715.1 | Cnuibacter physcomitrellae |
| 288 | 605024 | 605248 | + | NZ_CP066065.1 | Schaalia meyeri |
| 289 | 4346549 | 4346791 | - | NZ_CP018863.1 | Arthrobacter crystallopoietes |
| 290 | 932719 | 932955 | - | NZ_LR134350.1 | Actinomyces howellii |
| 291 | 432900 | 433097 | - | NZ_CP007519.1 | Trueperella pyogenes |
| 292 | 351636 | 351872 | + | NZ_AP017457.1 | Aurantimicrobium minutum |
| 293 | 1460698 | 1460934 | - | NZ_CP020468.1 | Actinomyces gaoshouyii |
| 294 | 876364 | 876600 | + | NZ_CP053642.1 | Actinomyces marmotae |
| 295 | 2825492 | 2825728 | - | NC_012669.1 | Beutenbergia cavernae DSM 12333 |
| 296 | 3835728 | 3835970 | + | NZ_CP038267.1 | Nocardioides euryhalodurans |
| 297 | 3382115 | 3382345 | - | NZ_CP065682.1 | Brevibacterium casei |
| 298 | 2534462 | 2534704 | + | NZ_AP019307.1 | Nocardioides baekrokdamisoli |
| 299 | 310549 | 310791 | + | NZ_CP044344.1 | Nocardioides cynanchi |
| 300 | 1680580 | 1680816 | - | NZ_CP066802.1 | Actinomyces weissii |
| 301 | 2640159 | 2640398 | - | NC_013521.1 | Sanguibacter keddieii DSM 10542 |
| 302 | 577882 | 578127 | + | NZ_CP019606.1 | Tessaracoccus aquimaris |
| 303 | 2377925 | 2378161 | - | NZ_CP016282.1 | Cryobacterium arcticum |
| 304 | 1952067 | 1952309 | + | NC_013595.1 | Streptosporangium roseum DSM 43021 |
| 305 | 2736364 | 2736594 | - | NZ_CP025333.1 | Brevibacterium aurantiacum |
| 306 | 3431049 | 3431291 | + | NZ_CP035806.1 | Leucobacter triazinivorans |
| 307 | 3105549 | 3105785 | - | NZ_CP017146.1 | Marisediminicola antarctica |
| 308 | 1128893 | 1129132 | - | NZ_CP014209.1 | Isoptericola dokdonensis DS-3 |
| 309 | 4324955 | 4325191 | + | NZ_CP030033.1 | Cryobacterium soli |
| 310 | 1108034 | 1108261 | + | NC_014165.1 | Thermobispora bispora DSM 43833 |
| 311 | 1559678 | 1559917 | + | NZ_CP045529.1 | Luteimicrobium xylanilyticum |
| 312 | 1424832 | 1425080 | + | NZ_LR134406.1 | Arachnia propionica |
| 313 | 1889194 | 1889436 | + | NZ_CP022753.1 | Nocardiopsis gilva YIM 90087 |
| 314 | 1941681 | 1941929 | + | NZ_LT996886.1 | Tessaracoccus timonensis |
| 315 | 1808559 | 1808813 | - | NZ_LT906441.1 | Cutibacterium granulosum |
| 316 | 1984671 | 1984916 | + | NZ_CP045572.1 | Nonomuraea nitratireducens |
| 317 | 1350149 | 1350379 | - | NZ_LR134357.1 | Actinomyces israelii |
| 318 | 2374592 | 2374834 | - | NC_014643.1 | Rothia dentocariosa ATCC 17931 |
| 319 | 958318 | 958554 | + | NZ_CP017812.1 | Boudabousia tangfeifanii |
| 320 | 495953 | 496207 | - | NZ_CP033719.1 | Propionibacterium acidifaciens |
| 321 | 661093 | 661341 | - | NZ_LR214441.1 | Tessaracoccus lapidicaptus |
| 322 | 2460930 | 2461172 | + | NZ_CP011112.1 | Luteipulveratus mongoliensis |
| 323 | 178699 | 178929 | + | NZ_CP035810.1 | Brevibacterium luteolum |
| 324 | 401004 | 401240 | - | NZ_LR134476.1 | Trueperella bialowiezensis |
| 325 | 2759384 | 2759593 | - | NZ_LR134363.1 | Actinomyces slackii |
| 326 | 1737618 | 1737860 | + | NC_014550.1 | Glutamicibacter arilaitensis Re117 |
| 327 | 1223866 | 1224108 | + | NZ_LT906453.1 | Dermatophilus congolensis |
| 328 | 3941628 | 3941870 | - | NC_013510.1 | Thermomonospora curvata DSM 43183 |
| 329 | 2388777 | 2389016 | - | NZ_CP039291.1 | Cellulomonas shaoxiangyii |
| 330 | 1516283 | 1516507 | + | NC_014246.1 | Mobiluncus curtisii ATCC 43063 |
| 331 | 1526656 | 1526901 | - | NZ_LR134479.1 | Rothia aeria |
| 332 | 1558609 | 1558887 | - | NC_006085.1 | Cutibacterium acnes KPA171202 |
| 333 | 1524303 | 1524539 | + | NZ_CP033724.1 | Clavibacter michiganensis subsp. michiganensis |
| 334 | 856667 | 856945 | + | NC_021064.1 | Cutibacterium avidum 44067 |
| 335 | 1546641 | 1546889 | - | NZ_CP060789.1 | Tessaracoccus defluvii |
| 336 | 2205150 | 2205404 | + | NZ_CP040635.1 | Acidipropionibacterium jensenii |
| 337 | 5188522 | 5188764 | + | NZ_LR134501.1 | Nocardiopsis dassonvillei |
| 338 | 3474127 | 3474342 | + | NZ_CP060713.1 | Nocardioides mesophilus |
| 339 | 1039741 | 1039983 | + | NZ_CP013290.1 | Janibacter indicus |
| 340 | 976954 | 977184 | + | NZ_LT593929.1 | Propionibacterium freudenreichii |
| 341 | 1302886 | 1303125 | + | NC_015588.1 | Isoptericola variabilis 225 |
| 342 | 2559254 | 2559496 | - | NC_014830.1 | Intrasporangium calvum DSM 43043 |
| 343 | 2161027 | 2161269 | - | NZ_CP044427.1 | Ornithinimicrobium pratense |
| 344 | 1772715 | 1772951 | + | NC_015635.1 | Microlunatus phosphovorus NM-1 |
| 345 | 1099336 | 1099578 | + | NZ_CP061538.1 | Rothia amarae |
| 346 | 2954269 | 2954517 | + | NZ_CP019607.1 | Tessaracoccus flavescens |
| 347 | 1344899 | 1345141 | - | NZ_CP044548.2 | Janibacter melonis |
| 348 | 2565374 | 2565628 | - | NZ_LR134442.1 | Propionibacterium australiense |
| 349 | 3565991 | 3566194 | + | NZ_CP014989.1 | Serinicoccus hydrothermalis |
| 350 | 419932 | 420165 | + | NZ_AP012333.1 | Parascardovia denticolens DSM 10105 = JCM 12538 |
| 351 | 1265543 | 1265782 | + | NC_013530.1 | Xylanimonas cellulosilytica DSM 15894 |
| 352 | 2450035 | 2450277 | - | NZ_CP038213.1 | Ornithinimicrobium flavum |
| 353 | 2061414 | 2061656 | - | NZ_CP015453.1 | Dietzia psychralcaliphila |
| 354 | 1468771 | 1469025 | + | NZ_CP025198.1 | Acidipropionibacterium virtanenii |
| 355 | 2373113 | 2373349 | + | NZ_CP035491.1 | Agromyces protaetiae |
| 356 | 72476 | 72712 | - | NZ_CP032624.1 | Gryllotalpicola protaetiae |
| 357 | 2791597 | 2791839 | + | NZ_LN849456.1 | Devriesea agamarum |
| 358 | 2024687 | 2024920 | - | NZ_CP015961.1 | Dietzia timorensis |
| 359 | 793164 | 793418 | - | NZ_CP019400.1 | Acidipropionibacterium acidipropionici |
| 360 | 1885459 | 1885695 | - | NZ_CP028913.1 | Agromyces badenianii |
| 361 | 3546503 | 3546703 | - | NZ_CP022295.1 | Nocardioides aromaticivorans |
| 362 | 2095465 | 2095707 | - | NZ_CP040887.1 | Serinicoccus chungangensis |
| 363 | 5132660 | 5132863 | + | NZ_CP041146.1 | Nocardioides humi |
| 364 | 3703899 | 3704138 | - | NZ_CP009896.1 | Pimelobacter simplex |
| 365 | 1046546 | 1046785 | + | NZ_LS483423.1 | Jonesia denitrificans |
| 366 | 184773 | 185024 | - | NZ_CP038436.1 | Nocardioides seonyuensis |
| 367 | 556312 | 556509 | + | NZ_CP026923.1 | Pontimonas salivibrio |
| 368 | 435711 | 435944 | - | NC_018720.1 | Bifidobacterium asteroides PRL2011 |
| 369 | 968658 | 968888 | + | NC_022438.1 | Leifsonia xyli subsp. cynodontis DSM 46306 |
| 370 | 1563061 | 1563276 | + | NZ_CP011502.1 | Aeromicrobium erythreum |
| 371 | 1783658 | 1783891 | - | NZ_CP011786.1 | Bifidobacterium actinocoloniiforme DSM 22766 |
| 372 | 2734985 | 2735215 | + | NZ_CP049255.1 | Microbacterium endophyticum |
| 373 | 1132098 | 1132340 | + | NZ_CP049257.1 | Nocardioides anomalus |
| 374 | 249248 | 249466 | - | NZ_AP012322.1 | Bifidobacterium angulatum DSM 20098 = JCM 7096 |
| 375 | 1906566 | 1906796 | - | NZ_CP064760.1 | Microbacterium schleiferi |
| 376 | 2052300 | 2052530 | - | NZ_CP031422.1 | Microbacterium oxydans |
| 377 | 1652905 | 1653135 | + | NZ_CP031425.1 | Microbacterium foliorum |
| 378 | 3213337 | 3213567 | + | NZ_CP035494.1 | Microbacterium protaetiae |
| 379 | 2139569 | 2139799 | - | NZ_CP038266.1 | Microbacterium wangchenii |
| 380 | 2097286 | 2097516 | - | NZ_CP044232.1 | Microbacterium lushaniae |
| 381 | 1758271 | 1758501 | - | NZ_CP031423.1 | Microbacterium lemovicicum |
| 382 | 1551004 | 1551234 | - | NZ_CP031421.1 | Microbacterium oleivorans |
| 383 | 1430062 | 1430292 | + | NZ_CP044231.1 | Microbacterium caowuchunii |
| 384 | 1787257 | 1787487 | + | NZ_CP018762.1 | Microbacterium aurum |
| 385 | 1612245 | 1612475 | - | NZ_CP038256.1 | Microbacterium sediminis |
| 386 | 538395 | 538625 | - | NZ_CP049253.1 | Microbacterium amylolyticum |
| 387 | 2927760 | 2927990 | + | NZ_CP061344.1 | Microbacterium hominis |
++ More..
| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_AP022570.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF00886.21 | 1.0 | 387 | 6 | same-strand | Ribosomal protein S16 |
| 2 | PF01782.20 | 0.99 | 382 | 47.0 | same-strand | RimM N-terminal domain |
| 3 | PF05239.18 | 0.81 | 314 | 35.5 | same-strand | PRC-barrel domain |
| 4 | PF01746.23 | 0.97 | 376 | 629.5 | same-strand | tRNA (Guanine-1)-methyltransferase |
| 5 | PF01245.22 | 0.82 | 318 | 1787.0 | same-strand | Ribosomal protein L19 |
| 6 | PF10502.11 | 0.75 | 291 | 2726.0 | same-strand | Signal peptidase, peptidase S26 |
++ More..