Result : P65299
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | Uncharacterized lipoprotein YqhH |
| NCBI Accession ID | AE005674.2 |
| Organism | Shigella flexneri |
| Left | 3154067 |
| Right | 3154324 |
| Strand | + |
| Nucleotide Sequence | ATGAAAACGATTTTCACCGTGGGAGCTGTTGTTCTGGCAACCTGCTTGCTCAGTGGCTGCGTCAATGAGCAAAAGGTCAATCAACTGGCGAGCAATGTACAAACATTAAATGCCAAAATCGCCCGGCTTGAGCAGGATATGAAAGCACTACGCCCACAAATCTATGCTGCCAAATCCGAAGCTAACAGAGCCAATACGCGTCTTGATGCACAGGACTATTTTGATTGCCTGCGCTGCTTGCGTATGTACGCAGAATGA |
| Sequence | MKTIFTVGAVVLATCLLSGCVNEQKVNQLASNVQTLNAKIARLEQDMKALRPQIYAAKSEANRANTRLDAQDYFDCLRCLRMYAE |
| Source of smORF | Swiss-Prot |
| Function | The ORF matches to the profile of cl23797. Profile Description: Lipoprotein leucine-zipper. This is leucine-zipper is found in the enterobacterial outer membrane lipoprotein LPP. It is likely that this domain oligomerizes and is involved in protein-protein interactions. As such it is a bundle of alpha-helical coiled-coils, which are known to play key roles in mediating specific protein-protein interactions for in molecular recognition and the assembly of multi-protein complexes. |
| Pubmed ID | 12384590 12704152 |
| Domain | CDD:420014 |
| Functional Category | Others |
| Uniprot ID | P65299 |
| ORF Length (Amino Acid) | 85 |
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| Conservation Analysis |
No. of Species: 66
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 3154067 | 3154324 | + | NC_004337.2 | Shigella flexneri 2a str. 301 |
| 2 | 3158627 | 3158884 | + | NC_000913.3 | Escherichia coli str. K-12 substr. MG1655 |
| 3 | 620715 | 620972 | + | NZ_CP061527.1 | Shigella dysenteriae |
| 4 | 3899105 | 3899362 | + | NC_002695.2 | Escherichia coli O157:H7 str. Sakai |
| 5 | 3675662 | 3675919 | + | NZ_LR134340.1 | Escherichia marmotae |
| 6 | 3138799 | 3139056 | + | NZ_AP014857.1 | Escherichia albertii |
| 7 | 2046544 | 2046804 | + | NZ_CP057657.1 | Escherichia fergusonii |
| 8 | 4237424 | 4237660 | - | NZ_CP011104.1 | Photorhabdus thracensis |
| 9 | 2151148 | 2151384 | - | NC_012962.1 | Photorhabdus asymbiotica |
| 10 | 2266140 | 2266376 | + | NZ_CP038853.1 | Pantoea vagans |
| 11 | 1789334 | 1789570 | - | NZ_CP034148.1 | Pantoea agglomerans |
| 12 | 2271312 | 2271548 | + | NZ_CP045720.1 | Pantoea eucalypti |
| 13 | 845092 | 845328 | - | NZ_CP023529.1 | Lelliottia amnigena |
| 14 | 3682694 | 3682930 | - | NZ_CP042941.1 | Atlantibacter hermannii |
| 15 | 3857106 | 3857342 | - | NZ_CP053416.1 | Salmonella bongori |
| 16 | 1957812 | 1958048 | - | NZ_AP022508.1 | Enterobacter bugandensis |
| 17 | 1984762 | 1984998 | - | NZ_CP027986.1 | Enterobacter sichuanensis |
| 18 | 1635445 | 1635681 | + | NC_009792.1 | Citrobacter koseri ATCC BAA-895 |
| 19 | 1904363 | 1904599 | - | NZ_CP017184.1 | Enterobacter roggenkampii |
| 20 | 2756976 | 2757212 | + | NZ_CP013990.1 | Leclercia adecarboxylata |
| 21 | 1930533 | 1930769 | - | NC_015968.1 | Enterobacter soli |
| 22 | 566813 | 567049 | + | NZ_CP025034.2 | Enterobacter sp. SGAir0187 |
| 23 | 1978390 | 1978626 | - | NZ_CP009756.1 | Enterobacter cloacae |
| 24 | 1188353 | 1188589 | - | NZ_CP017279.1 | Enterobacter ludwigii |
| 25 | 1459370 | 1459606 | - | NC_003197.2 | Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 |
| 26 | 1485188 | 1485424 | + | NZ_CP045769.1 | Enterobacter cancerogenus |
| 27 | 3616109 | 3616345 | - | NZ_LT556085.1 | Citrobacter amalonaticus |
| 28 | 2194228 | 2194464 | - | NZ_CP043318.1 | Enterobacter chengduensis |
| 29 | 2220483 | 2220719 | - | NZ_CP041247.1 | Raoultella electrica |
| 30 | 1474167 | 1474403 | - | NC_013716.1 | Citrobacter rodentium ICC168 |
| 31 | 3382065 | 3382301 | + | NZ_CP045205.1 | Citrobacter telavivensis |
| 32 | 4964631 | 4964867 | + | NZ_CP026047.1 | Raoultella planticola |
| 33 | 2304933 | 2305169 | - | NZ_CP046672.1 | Raoultella ornithinolytica |
| 34 | 2315021 | 2315257 | - | NZ_CP050508.1 | Raoultella terrigena |
| 35 | 4303665 | 4303901 | + | NZ_CP007230.1 | Yersinia similis |
| 36 | 1588556 | 1588792 | - | NZ_CP034035.1 | Brenneria rubrifaciens |
| 37 | 4439400 | 4439636 | - | NZ_AP019007.1 | Enterobacter oligotrophicus |
| 38 | 2348761 | 2348997 | + | NZ_CP006569.1 | Sodalis praecaptivus |
| 39 | 2793209 | 2793445 | + | NZ_CP038498.1 | Pectobacterium punjabense |
| 40 | 4412213 | 4412449 | + | NZ_CP047495.1 | Pectobacterium brasiliense |
| 41 | 1871438 | 1871674 | - | NZ_CP034036.1 | Brenneria nigrifluens DSM 30175 = ATCC 13028 |
| 42 | 1966826 | 1967062 | - | NZ_CP051652.1 | Pectobacterium carotovorum |
| 43 | 2989286 | 2989522 | + | NZ_CP009125.1 | Pectobacterium atrosepticum |
| 44 | 2921633 | 2921869 | + | NZ_CP065044.1 | Pectobacterium aroidearum |
| 45 | 2091480 | 2091716 | - | NZ_CP034938.1 | Pectobacterium odoriferum |
| 46 | 1745084 | 1745320 | + | NZ_CP017482.1 | Pectobacterium polaris |
| 47 | 1107226 | 1107462 | - | NZ_CP015749.1 | Pectobacterium parmentieri |
| 48 | 4728484 | 4728720 | + | NZ_CP015750.1 | Pectobacterium wasabiae CFBP 3304 |
| 49 | 1286697 | 1286933 | - | NZ_CP014137.1 | Brenneria goodwinii |
| 50 | 1939150 | 1939386 | - | NZ_LR134373.1 | Yersinia pseudotuberculosis |
| 51 | 1751622 | 1751858 | - | NC_017910.1 | Shimwellia blattae DSM 4481 = NBRC 105725 |
| 52 | 1509026 | 1509262 | + | NZ_CP027107.1 | Cronobacter sakazakii |
| 53 | 2293687 | 2293923 | + | NZ_CP013940.1 | Cronobacter malonaticus LMG 23826 |
| 54 | 1874973 | 1875209 | - | NZ_CP012257.1 | Cronobacter universalis NCTC 9529 |
| 55 | 1875882 | 1876118 | - | NZ_CP012264.1 | Cronobacter condimenti 1330 |
| 56 | 2135098 | 2135334 | + | NZ_CP012268.1 | Cronobacter muytjensii ATCC 51329 |
| 57 | 1900364 | 1900600 | - | NZ_CP012266.1 | Cronobacter dublinensis subsp. dublinensis LMG 23823 |
| 58 | 720285 | 720521 | - | NZ_CP038469.1 | Citrobacter tructae |
| 59 | 197328 | 197564 | + | NZ_CP044098.1 | Citrobacter portucalensis |
| 60 | 4867455 | 4867691 | - | NZ_CP033744.1 | Citrobacter freundii |
| 61 | 2474772 | 2475008 | - | NZ_CP060111.1 | Klebsiella michiganensis |
| 62 | 2524087 | 2524323 | - | NZ_CP036175.1 | Klebsiella huaxiensis |
| 63 | 1782158 | 1782394 | - | NC_012779.2 | Edwardsiella ictaluri 93-146 |
| 64 | 2159709 | 2159945 | - | NZ_CP045845.1 | Kluyvera intermedia |
| 65 | 3059515 | 3059751 | + | NC_005126.1 | Photorhabdus laumondii subsp. laumondii TTO1 |
| 66 | 2477817 | 2478053 | + | NC_013892.1 | Xenorhabdus bovienii SS-2004 |
| 67 | 1867637 | 1867873 | - | NZ_FO704550.1 | Xenorhabdus doucetiae |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_CP011104.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF00005.29 | 0.85 | 56 | 4115.5 | opposite-strand | ABC transporter |
| 2 | PF01458.19 | 0.86 | 57 | 2842 | opposite-strand | SUF system FeS cluster assembly, SufBD |
| 3 | PF00266.21 | 0.86 | 57 | 1627.5 | opposite-strand | Aminotransferase class-V |
| 4 | PF02657.17 | 0.86 | 57 | 1197 | opposite-strand | Fe-S metabolism associated domain |
| 5 | PF17969.3 | 0.91 | 60 | 80.5 | opposite-strand | L,D-transpeptidase C-terminal domain |
| 6 | PF03734.16 | 0.91 | 60 | 80.5 | opposite-strand | L,D-transpeptidase catalytic domain |
| 7 | PF00224.23 | 0.89 | 59 | 311 | same-strand | Pyruvate kinase, barrel domain |
| 8 | PF02887.18 | 0.89 | 59 | 311 | same-strand | Pyruvate kinase, alpha/beta domain |
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