Result : P65293
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | Uncharacterized lipoprotein YgdI |
| NCBI Accession ID | |
| Organism | Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) |
| Left | |
| Right | |
| Strand | |
| Nucleotide Sequence | |
| Sequence | MKKTAAIISACMLTFALSACSGSNYVMHTNDGRTIVSDGKPQTDNDTGMISYKDANGNKQQINRTDVKEMVELDQ |
| Source of smORF | Swiss-Prot |
| Function | The ORF matches to the profile of cl05512. Profile Description: Bacterial protein of unknown function (DUF903). Members of this family are exclusively lipoproteins of small size, including YgdI and YgdR from E. coli K-12. |
| Pubmed ID | 12471157 |
| Domain | CDD:414440 |
| Functional Category | Others |
| Uniprot ID | P65293 |
| ORF Length (Amino Acid) | 75 |
++ More..
| Conservation Analysis |
No. of Species: 117
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 3807206 | 3807433 | + | NZ_CP057657.1 | Escherichia fergusonii |
| 2 | 1862733 | 1862951 | + | NZ_CP057657.1 | Escherichia fergusonii |
| 3 | 808232 | 808459 | + | NZ_CP061527.1 | Shigella dysenteriae |
| 4 | 779996 | 780214 | - | NZ_CP061527.1 | Shigella dysenteriae |
| 5 | 2942918 | 2943145 | - | NC_000913.3 | Escherichia coli str. K-12 substr. MG1655 |
| 6 | 2971271 | 2971489 | + | NC_000913.3 | Escherichia coli str. K-12 substr. MG1655 |
| 7 | 3665445 | 3665672 | - | NC_002695.2 | Escherichia coli O157:H7 str. Sakai |
| 8 | 3693798 | 3694016 | + | NC_002695.2 | Escherichia coli O157:H7 str. Sakai |
| 9 | 2903352 | 2903579 | - | NC_004337.2 | Shigella flexneri 2a str. 301 |
| 10 | 2931632 | 2931850 | + | NC_004337.2 | Shigella flexneri 2a str. 301 |
| 11 | 3370635 | 3370862 | + | NZ_CP044098.1 | Citrobacter portucalensis |
| 12 | 3342166 | 3342384 | - | NZ_CP044098.1 | Citrobacter portucalensis |
| 13 | 1565682 | 1565915 | - | NZ_CP044098.1 | Citrobacter portucalensis |
| 14 | 1730794 | 1731021 | - | NZ_CP033744.1 | Citrobacter freundii |
| 15 | 1759202 | 1759420 | + | NZ_CP033744.1 | Citrobacter freundii |
| 16 | 3488544 | 3488777 | + | NZ_CP033744.1 | Citrobacter freundii |
| 17 | 4335549 | 4335776 | + | NZ_CP038469.1 | Citrobacter tructae |
| 18 | 4307165 | 4307383 | - | NZ_CP038469.1 | Citrobacter tructae |
| 19 | 2630253 | 2630486 | - | NZ_CP038469.1 | Citrobacter tructae |
| 20 | 3426305 | 3426532 | - | NZ_LR134340.1 | Escherichia marmotae |
| 21 | 3455153 | 3455371 | + | NZ_LR134340.1 | Escherichia marmotae |
| 22 | 3018359 | 3018586 | - | NC_013716.1 | Citrobacter rodentium ICC168 |
| 23 | 3046675 | 3046893 | + | NC_013716.1 | Citrobacter rodentium ICC168 |
| 24 | 59856 | 60089 | + | NC_013716.1 | Citrobacter rodentium ICC168 |
| 25 | 172439 | 172666 | - | NZ_LT556085.1 | Citrobacter amalonaticus |
| 26 | 200364 | 200582 | + | NZ_LT556085.1 | Citrobacter amalonaticus |
| 27 | 2271870 | 2272103 | + | NZ_LT556085.1 | Citrobacter amalonaticus |
| 28 | 951311 | 951538 | - | NZ_CP053416.1 | Salmonella bongori |
| 29 | 981182 | 981400 | + | NZ_CP053416.1 | Salmonella bongori |
| 30 | 2679078 | 2679293 | + | NZ_CP053416.1 | Salmonella bongori |
| 31 | 2683736 | 2683951 | + | NZ_CP053416.1 | Salmonella bongori |
| 32 | 3135542 | 3135769 | - | NC_003197.2 | Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 |
| 33 | 3165147 | 3165365 | + | NC_003197.2 | Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 |
| 34 | 93622 | 93837 | + | NC_003197.2 | Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 |
| 35 | 1554302 | 1554529 | + | NZ_CP045205.1 | Citrobacter telavivensis |
| 36 | 1526018 | 1526236 | - | NZ_CP045205.1 | Citrobacter telavivensis |
| 37 | 4852437 | 4852655 | - | NZ_CP045205.1 | Citrobacter telavivensis |
| 38 | 858152 | 858379 | + | NZ_CP054058.1 | Scandinavium goeteborgense |
| 39 | 829930 | 830148 | - | NZ_CP054058.1 | Scandinavium goeteborgense |
| 40 | 3896150 | 3896383 | - | NZ_CP054058.1 | Scandinavium goeteborgense |
| 41 | 946930 | 947157 | + | NZ_CP013990.1 | Leclercia adecarboxylata |
| 42 | 919458 | 919676 | - | NZ_CP013990.1 | Leclercia adecarboxylata |
| 43 | 4082826 | 4083041 | - | NZ_CP013990.1 | Leclercia adecarboxylata |
| 44 | 2471616 | 2471843 | - | NZ_CP023529.1 | Lelliottia amnigena |
| 45 | 2499038 | 2499256 | + | NZ_CP023529.1 | Lelliottia amnigena |
| 46 | 4133889 | 4134107 | + | NZ_CP023529.1 | Lelliottia amnigena |
| 47 | 3877884 | 3878078 | - | NC_009792.1 | Citrobacter koseri ATCC BAA-895 |
| 48 | 3906835 | 3907053 | + | NC_009792.1 | Citrobacter koseri ATCC BAA-895 |
| 49 | 3106075 | 3106308 | - | NC_009792.1 | Citrobacter koseri ATCC BAA-895 |
| 50 | 4616065 | 4616292 | + | NZ_CP017279.1 | Enterobacter ludwigii |
| 51 | 4588702 | 4588920 | - | NZ_CP017279.1 | Enterobacter ludwigii |
| 52 | 3852775 | 3852963 | + | NZ_CP017279.1 | Enterobacter ludwigii |
| 53 | 2866519 | 2866746 | - | NZ_AP014857.1 | Escherichia albertii |
| 54 | 2894898 | 2895116 | + | NZ_AP014857.1 | Escherichia albertii |
| 55 | 5242380 | 5242604 | - | NZ_CP020388.1 | Pluralibacter gergoviae |
| 56 | 5271312 | 5271530 | + | NZ_CP020388.1 | Pluralibacter gergoviae |
| 57 | 1836523 | 1836756 | + | NZ_CP020388.1 | Pluralibacter gergoviae |
| 58 | 950880 | 951107 | + | NZ_CP045845.1 | Kluyvera intermedia |
| 59 | 905829 | 906047 | - | NZ_CP045845.1 | Kluyvera intermedia |
| 60 | 3908879 | 3909097 | - | NZ_CP045845.1 | Kluyvera intermedia |
| 61 | 1505222 | 1505449 | - | NZ_AP019007.1 | Enterobacter oligotrophicus |
| 62 | 1532506 | 1532724 | + | NZ_AP019007.1 | Enterobacter oligotrophicus |
| 63 | 3243083 | 3243316 | + | NZ_AP019007.1 | Enterobacter oligotrophicus |
| 64 | 3723713 | 3723940 | - | NZ_AP022508.1 | Enterobacter bugandensis |
| 65 | 3750920 | 3751138 | + | NZ_AP022508.1 | Enterobacter bugandensis |
| 66 | 712837 | 713025 | + | NZ_AP022508.1 | Enterobacter bugandensis |
| 67 | 3775739 | 3775966 | - | NZ_CP027986.1 | Enterobacter sichuanensis |
| 68 | 3803056 | 3803274 | + | NZ_CP027986.1 | Enterobacter sichuanensis |
| 69 | 685288 | 685476 | + | NZ_CP027986.1 | Enterobacter sichuanensis |
| 70 | 3777385 | 3777612 | - | NZ_CP017184.1 | Enterobacter roggenkampii |
| 71 | 3804722 | 3804940 | + | NZ_CP017184.1 | Enterobacter roggenkampii |
| 72 | 704821 | 705054 | + | NZ_CP017184.1 | Enterobacter roggenkampii |
| 73 | 3499977 | 3500204 | + | NZ_CP025034.2 | Enterobacter sp. SGAir0187 |
| 74 | 3472193 | 3472411 | - | NZ_CP025034.2 | Enterobacter sp. SGAir0187 |
| 75 | 1819731 | 1819964 | - | NZ_CP025034.2 | Enterobacter sp. SGAir0187 |
| 76 | 3861810 | 3862037 | - | NZ_CP009756.1 | Enterobacter cloacae |
| 77 | 3889308 | 3889526 | + | NZ_CP009756.1 | Enterobacter cloacae |
| 78 | 730617 | 730805 | + | NZ_CP009756.1 | Enterobacter cloacae |
| 79 | 2509164 | 2509358 | + | NZ_CP009756.1 | Enterobacter cloacae |
| 80 | 4628405 | 4628632 | + | NZ_CP045769.1 | Enterobacter cancerogenus |
| 81 | 4600935 | 4601153 | - | NZ_CP045769.1 | Enterobacter cancerogenus |
| 82 | 2830677 | 2830880 | - | NZ_CP045769.1 | Enterobacter cancerogenus |
| 83 | 1532168 | 1532398 | + | NZ_CP051548.1 | Phytobacter diazotrophicus |
| 84 | 1503684 | 1503902 | - | NZ_CP051548.1 | Phytobacter diazotrophicus |
| 85 | 5086848 | 5087081 | - | NZ_CP051548.1 | Phytobacter diazotrophicus |
| 86 | 981919 | 982146 | + | NZ_CP014007.2 | Kosakonia oryzae |
| 87 | 953881 | 954099 | - | NZ_CP014007.2 | Kosakonia oryzae |
| 88 | 4552504 | 4552719 | - | NZ_CP014007.2 | Kosakonia oryzae |
| 89 | 4084597 | 4084824 | - | NZ_CP043318.1 | Enterobacter chengduensis |
| 90 | 4111789 | 4112007 | + | NZ_CP043318.1 | Enterobacter chengduensis |
| 91 | 830095 | 830283 | + | NZ_CP043318.1 | Enterobacter chengduensis |
| 92 | 4205747 | 4205974 | - | NZ_CP015113.1 | Kosakonia radicincitans |
| 93 | 4233793 | 4234011 | + | NZ_CP015113.1 | Kosakonia radicincitans |
| 94 | 535421 | 535636 | + | NZ_CP015113.1 | Kosakonia radicincitans |
| 95 | 802731 | 802958 | - | NZ_CP042941.1 | Atlantibacter hermannii |
| 96 | 830161 | 830379 | + | NZ_CP042941.1 | Atlantibacter hermannii |
| 97 | 1010094 | 1010327 | - | NZ_CP042941.1 | Atlantibacter hermannii |
| 98 | 205927 | 206157 | + | NZ_CP011602.1 | Phytobacter ursingii |
| 99 | 177132 | 177350 | - | NZ_CP011602.1 | Phytobacter ursingii |
| 100 | 3812810 | 3813043 | - | NZ_CP011602.1 | Phytobacter ursingii |
| 101 | 4252357 | 4252584 | + | NZ_CP027107.1 | Cronobacter sakazakii |
| 102 | 4224445 | 4224663 | - | NZ_CP027107.1 | Cronobacter sakazakii |
| 103 | 2690959 | 2691192 | - | NZ_CP027107.1 | Cronobacter sakazakii |
| 104 | 703775 | 704002 | + | NZ_CP013940.1 | Cronobacter malonaticus LMG 23826 |
| 105 | 675745 | 675963 | - | NZ_CP013940.1 | Cronobacter malonaticus LMG 23826 |
| 106 | 3438857 | 3439090 | - | NZ_CP013940.1 | Cronobacter malonaticus LMG 23826 |
| 107 | 3382109 | 3382336 | - | NZ_CP012257.1 | Cronobacter universalis NCTC 9529 |
| 108 | 3410150 | 3410368 | + | NZ_CP012257.1 | Cronobacter universalis NCTC 9529 |
| 109 | 739694 | 739927 | + | NZ_CP012257.1 | Cronobacter universalis NCTC 9529 |
| 110 | 3469393 | 3469620 | - | NZ_CP012264.1 | Cronobacter condimenti 1330 |
| 111 | 3497427 | 3497645 | + | NZ_CP012264.1 | Cronobacter condimenti 1330 |
| 112 | 747768 | 747953 | + | NZ_CP012264.1 | Cronobacter condimenti 1330 |
| 113 | 545803 | 546030 | + | NZ_CP012268.1 | Cronobacter muytjensii ATCC 51329 |
| 114 | 517783 | 518001 | - | NZ_CP012268.1 | Cronobacter muytjensii ATCC 51329 |
| 115 | 3304903 | 3305136 | - | NZ_CP012268.1 | Cronobacter muytjensii ATCC 51329 |
| 116 | 3590729 | 3590956 | - | NZ_CP012266.1 | Cronobacter dublinensis subsp. dublinensis LMG 23823 |
| 117 | 3618760 | 3618978 | + | NZ_CP012266.1 | Cronobacter dublinensis subsp. dublinensis LMG 23823 |
| 118 | 742223 | 742456 | + | NZ_CP012266.1 | Cronobacter dublinensis subsp. dublinensis LMG 23823 |
| 119 | 1071977 | 1072201 | + | NZ_CP060111.1 | Klebsiella michiganensis |
| 120 | 1006138 | 1006356 | - | NZ_CP060111.1 | Klebsiella michiganensis |
| 121 | 3188362 | 3188583 | - | NZ_CP060111.1 | Klebsiella michiganensis |
| 122 | 952018 | 952245 | + | NZ_AP023184.1 | Buttiauxella agrestis |
| 123 | 923726 | 923944 | - | NZ_AP023184.1 | Buttiauxella agrestis |
| 124 | 700845 | 701030 | + | NZ_AP023184.1 | Buttiauxella agrestis |
| 125 | 959632 | 959856 | + | NZ_CP065838.1 | Klebsiella quasipneumoniae |
| 126 | 894139 | 894357 | - | NZ_CP065838.1 | Klebsiella quasipneumoniae |
| 127 | 2355821 | 2356042 | + | NZ_CP065838.1 | Klebsiella quasipneumoniae |
| 128 | 4419235 | 4419420 | - | NZ_CP065838.1 | Klebsiella quasipneumoniae |
| 129 | 4277298 | 4277522 | - | NC_016845.1 | Klebsiella pneumoniae subsp. pneumoniae HS11286 |
| 130 | 4341397 | 4341615 | + | NC_016845.1 | Klebsiella pneumoniae subsp. pneumoniae HS11286 |
| 131 | 796074 | 796259 | + | NC_016845.1 | Klebsiella pneumoniae subsp. pneumoniae HS11286 |
| 132 | 971775 | 971999 | + | NZ_CP054254.1 | Klebsiella variicola |
| 133 | 906148 | 906366 | - | NZ_CP054254.1 | Klebsiella variicola |
| 134 | 2439298 | 2439519 | + | NZ_CP054254.1 | Klebsiella variicola |
| 135 | 4698813 | 4698998 | - | NZ_CP054254.1 | Klebsiella variicola |
| 136 | 4153377 | 4153601 | - | NZ_CP038662.1 | Serratia nematodiphila |
| 137 | 3464614 | 3464838 | - | NZ_CP016948.1 | Serratia surfactantfaciens |
| 138 | 4209431 | 4209655 | - | NZ_CP048784.1 | Serratia liquefaciens |
| 139 | 4267472 | 4267696 | - | NC_015567.1 | Serratia plymuthica AS9 |
| 140 | 4155848 | 4156072 | - | NZ_LT906479.1 | Serratia ficaria |
| 141 | 381009 | 381233 | - | NZ_CP065640.1 | Serratia rubidaea |
| 142 | 948986 | 949210 | + | NZ_CP071320.1 | Serratia ureilytica |
| 143 | 692309 | 692536 | + | NZ_LR134201.1 | Cedecea lapagei |
| 144 | 664978 | 665196 | - | NZ_LR134201.1 | Cedecea lapagei |
| 145 | 3881216 | 3881401 | - | NZ_LR134201.1 | Cedecea lapagei |
| 146 | 709379 | 709606 | + | NZ_CP023525.1 | Cedecea neteri |
| 147 | 681761 | 681979 | - | NZ_CP023525.1 | Cedecea neteri |
| 148 | 4163675 | 4163908 | - | NZ_CP023525.1 | Cedecea neteri |
| 149 | 3969959 | 3970183 | - | NC_014306.1 | Erwinia billingiae Eb661 |
| 150 | 4912964 | 4913158 | + | NC_014306.1 | Erwinia billingiae Eb661 |
| 151 | 3036206 | 3036430 | - | NZ_LN907827.1 | Erwinia gerundensis |
| 152 | 888871 | 889098 | + | NZ_CP035129.1 | Kosakonia cowanii |
| 153 | 861381 | 861599 | - | NZ_CP035129.1 | Kosakonia cowanii |
| 154 | 3929025 | 3929228 | - | NZ_CP035129.1 | Kosakonia cowanii |
| 155 | 4052932 | 4053159 | + | NZ_CP045300.1 | Kosakonia arachidis |
| 156 | 4024885 | 4025103 | - | NZ_CP045300.1 | Kosakonia arachidis |
| 157 | 2331702 | 2331890 | - | NZ_CP045300.1 | Kosakonia arachidis |
| 158 | 4228960 | 4229184 | - | NZ_LR134494.1 | Serratia quinivorans |
| 159 | 3707879 | 3708103 | + | NZ_CP014136.1 | Gibbsiella quercinecans |
| 160 | 2430634 | 2430858 | + | NZ_CP019706.1 | Pantoea alhagi |
| 161 | 3151562 | 3151789 | + | NZ_CP019706.1 | Pantoea alhagi |
| 162 | 437877 | 438101 | - | NZ_CP011254.1 | Serratia fonticola |
| 163 | 466155 | 466373 | + | NZ_CP011254.1 | Serratia fonticola |
| 164 | 2782847 | 2783071 | - | NZ_CP028271.1 | Mixta intestinalis |
| 165 | 1933538 | 1933765 | - | NZ_CP028271.1 | Mixta intestinalis |
| 166 | 3410483 | 3410707 | - | NZ_CP061511.1 | Mixta calida |
| 167 | 2710420 | 2710647 | - | NZ_CP061511.1 | Mixta calida |
| 168 | 3635979 | 3636200 | - | NZ_CP050150.1 | Hafnia alvei |
| 169 | 3917128 | 3917355 | - | NZ_CP063425.1 | Kosakonia pseudosacchari |
| 170 | 3945143 | 3945361 | + | NZ_CP063425.1 | Kosakonia pseudosacchari |
| 171 | 758242 | 758457 | + | NZ_CP063425.1 | Kosakonia pseudosacchari |
| 172 | 3646375 | 3646596 | - | NZ_CP032487.1 | Yersinia hibernica |
| 173 | 842881 | 843105 | + | NZ_CP023567.1 | Erwinia pyrifoliae |
| 174 | 1722637 | 1722849 | - | NZ_CP023567.1 | Erwinia pyrifoliae |
| 175 | 1722883 | 1723080 | - | NZ_CP023567.1 | Erwinia pyrifoliae |
| 176 | 3226560 | 3226784 | - | NZ_CP034148.1 | Pantoea agglomerans |
| 177 | 864813 | 865034 | + | NZ_CP045720.1 | Pantoea eucalypti |
| 178 | 842767 | 842988 | + | NZ_CP038853.1 | Pantoea vagans |
| 179 | 3650648 | 3650869 | - | NZ_CP043727.1 | Yersinia canariae |
| 180 | 4063880 | 4064107 | + | NZ_CP016337.1 | Kosakonia sacchari |
| 181 | 4035875 | 4036093 | - | NZ_CP016337.1 | Kosakonia sacchari |
| 182 | 2315351 | 2315566 | - | NZ_CP016337.1 | Kosakonia sacchari |
| 183 | 1960847 | 1961068 | - | NZ_CP049115.1 | Pantoea stewartii |
| 184 | 223111 | 223338 | - | NZ_CP049115.1 | Pantoea stewartii |
| 185 | 959608 | 959829 | + | NZ_CP011118.1 | Yersinia enterocolitica |
| 186 | 1721617 | 1721838 | - | NZ_CP009781.1 | Yersinia aldovae 670-83 |
| 187 | 993851 | 994072 | + | NC_017554.1 | Pantoea ananatis PA13 |
| 188 | 2539361 | 2539588 | + | NC_017554.1 | Pantoea ananatis PA13 |
| 189 | 974180 | 974401 | + | NZ_CP006569.1 | Sodalis praecaptivus |
| 190 | 1871372 | 1871593 | + | NZ_CP006569.1 | Sodalis praecaptivus |
| 191 | 104173 | 104394 | - | NZ_CP054043.1 | Yersinia mollaretii ATCC 43969 |
| 192 | 808116 | 808340 | + | NC_013961.1 | Erwinia amylovora CFBP1430 |
| 193 | 1629374 | 1629595 | - | NC_013961.1 | Erwinia amylovora CFBP1430 |
| 194 | 862809 | 863030 | + | NZ_CP046293.1 | Yersinia intermedia |
| 195 | 1862484 | 1862705 | - | NZ_CP009787.1 | Yersinia rohdei |
| 196 | 90854 | 91042 | - | NZ_CP040428.1 | Jejubacter calystegiae |
| 197 | 119705 | 119923 | + | NZ_CP040428.1 | Jejubacter calystegiae |
| 198 | 3618921 | 3619109 | - | NZ_CP026377.1 | Mixta gaviniae |
| 199 | 2841964 | 2842191 | - | NZ_CP026377.1 | Mixta gaviniae |
| 200 | 3648046 | 3648228 | + | NZ_CP026377.1 | Mixta gaviniae |
| 201 | 963182 | 963403 | + | NZ_CP065534.1 | Lonsdalea populi |
| 202 | 1998784 | 1999005 | + | NZ_CP023009.1 | Lonsdalea britannica |
| 203 | 3045173 | 3045400 | - | NC_010694.1 | Erwinia tasmaniensis Et1/99 |
| 204 | 2174204 | 2174434 | + | NC_010694.1 | Erwinia tasmaniensis Et1/99 |
| 205 | 2173967 | 2174188 | + | NC_010694.1 | Erwinia tasmaniensis Et1/99 |
| 206 | 788302 | 788523 | + | NZ_CP034035.1 | Brenneria rubrifaciens |
| 207 | 4556602 | 4556823 | + | NZ_CP067057.1 | Rahnella aceris |
| 208 | 1446997 | 1447230 | - | NZ_CP067057.1 | Rahnella aceris |
| 209 | 3884146 | 3884367 | - | NZ_CP065044.1 | Pectobacterium aroidearum |
| 210 | 1166770 | 1166991 | + | NZ_CP038498.1 | Pectobacterium punjabense |
| 211 | 553168 | 553389 | - | NZ_CP047495.1 | Pectobacterium brasiliense |
| 212 | 3704492 | 3704713 | - | NZ_CP051652.1 | Pectobacterium carotovorum |
| 213 | 1229188 | 1229409 | + | NZ_CP034938.1 | Pectobacterium odoriferum |
| 214 | 4971671 | 4971892 | + | NZ_CP017482.1 | Pectobacterium polaris |
| 215 | 409439 | 409660 | + | NZ_CP015749.1 | Pectobacterium parmentieri |
| 216 | 3049808 | 3050029 | + | NZ_CP015750.1 | Pectobacterium wasabiae CFBP 3304 |
| 217 | 984951 | 985136 | + | NZ_CP015581.1 | Tatumella citrea |
| 218 | 3742555 | 3742776 | - | NZ_CP034036.1 | Brenneria nigrifluens DSM 30175 = ATCC 13028 |
| 219 | 1134124 | 1134345 | + | NZ_CP009125.1 | Pectobacterium atrosepticum |
| 220 | 3790511 | 3790729 | + | NC_015968.1 | Enterobacter soli |
| 221 | 685820 | 686053 | + | NC_015968.1 | Enterobacter soli |
| 222 | 3079042 | 3079263 | - | NZ_CP014137.1 | Brenneria goodwinii |
| 223 | 890235 | 890453 | - | NZ_CP041247.1 | Raoultella electrica |
| 224 | 4470011 | 4470196 | - | NZ_CP041247.1 | Raoultella electrica |
| 225 | 3702087 | 3702305 | + | NZ_CP012871.1 | [Enterobacter] lignolyticus |
| 226 | 728333 | 728551 | + | NZ_CP026047.1 | Raoultella planticola |
| 227 | 2538881 | 2539066 | + | NZ_CP026047.1 | Raoultella planticola |
| 228 | 959464 | 959682 | - | NZ_CP046672.1 | Raoultella ornithinolytica |
| 229 | 4693444 | 4693629 | - | NZ_CP046672.1 | Raoultella ornithinolytica |
| 230 | 993225 | 993443 | - | NZ_CP050508.1 | Raoultella terrigena |
| 231 | 4803345 | 4803530 | - | NZ_CP050508.1 | Raoultella terrigena |
| 232 | 1095511 | 1095729 | - | NZ_CP036175.1 | Klebsiella huaxiensis |
| 233 | 5054279 | 5054512 | - | NZ_CP036175.1 | Klebsiella huaxiensis |
| 234 | 3132746 | 3132967 | - | NZ_CP036175.1 | Klebsiella huaxiensis |
| 235 | 947037 | 947255 | - | NZ_LR134475.1 | Klebsiella aerogenes |
| 236 | 2414872 | 2415093 | + | NZ_LR134475.1 | Klebsiella aerogenes |
| 237 | 4369041 | 4369229 | - | NZ_LR134475.1 | Klebsiella aerogenes |
| 238 | 1128211 | 1128432 | + | NC_014500.1 | Dickeya dadantii 3937 |
| 239 | 805733 | 805951 | - | NC_017910.1 | Shimwellia blattae DSM 4481 = NBRC 105725 |
| 240 | 3426587 | 3426793 | - | NC_017910.1 | Shimwellia blattae DSM 4481 = NBRC 105725 |
| 241 | 3621598 | 3621819 | - | NC_012912.1 | Dickeya chrysanthemi Ech1591 |
| 242 | 12711 | 12926 | + | NC_015963.1 | Enterobacter soli |
| 243 | 1047402 | 1047623 | + | NZ_CP025799.1 | Dickeya zeae |
| 244 | 341867 | 342085 | - | NZ_CP067059.1 | Rahnella aceris |
| 245 | 394199 | 394423 | - | NZ_LN907828.1 | Erwinia gerundensis |
| 246 | 394444 | 394665 | - | NZ_LN907828.1 | Erwinia gerundensis |
| 247 | 2288842 | 2289075 | - | NZ_CP048796.1 | Providencia vermicola |
| 248 | 2405568 | 2405786 | - | NZ_LS483470.1 | Leminorella richardii |
| 249 | 2481399 | 2481602 | - | NZ_CP034752.1 | Jinshanibacter zhutongyuii |
| 250 | 4972899 | 4973087 | + | NZ_CP028897.1 | Dongshaea marina |
| 251 | 3216660 | 3216887 | + | NZ_CP028897.1 | Dongshaea marina |
| 252 | 127667 | 127858 | - | NZ_CP034150.1 | Pantoea agglomerans |
| 253 | 134250 | 134438 | + | NZ_CP038855.1 | Pantoea vagans |
| 254 | 88156 | 88347 | + | NZ_CP045722.1 | Pantoea eucalypti |
++ More..
| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_CP057657.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF01520.20 | 0.61 | 71 | 4511.0 | same-strand | N-acetylmuramoyl-L-alanine amidase |
| 2 | PF11741.10 | 0.61 | 71 | 4511.0 | same-strand | AMIN domain |
| 3 | PF06725.13 | 0.79 | 92 | 2761 | same-strand | 3D domain |
| 4 | PF00899.23 | 0.86 | 101 | 1855.0 | same-strand | ThiF family |
| 5 | PF02657.17 | 0.89 | 104 | 1401 | opposite-strand | Fe-S metabolism associated domain |
| 6 | PF00266.21 | 0.89 | 104 | 193 | opposite-strand | Aminotransferase class-V |
| 7 | PF03466.22 | 0.91 | 106 | 353.5 | same-strand | LysR substrate binding domain |
| 8 | PF00126.29 | 0.85 | 100 | 352 | same-strand | Bacterial regulatory helix-turn-helix protein, lysR family |
| 9 | PF04241.17 | 0.89 | 104 | 1309 | same-strand | Protein of unknown function (DUF423) |
| 10 | PF18125.3 | 0.89 | 104 | 1697 | same-strand | RlmM ferredoxin-like domain |
| 11 | PF02739.18 | 0.68 | 80 | 2905.0 | opposite-strand | 5'-3' exonuclease, N-terminal resolvase-like domain |
| 12 | PF01367.22 | 0.68 | 80 | 2905.0 | opposite-strand | 5'-3' exonuclease, C-terminal SAM fold |
++ More..