* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_000962.3
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF01139.19
|
1.0
|
2
|
3600.5
|
same-strand
|
tRNA-splicing ligase RtcB
|
2
|
PF08962.13
|
1.0
|
2
|
3280.5
|
opposite-strand
|
Domain of unknown function (DUF1876)
|
3
|
PF01814.25
|
1.0
|
2
|
2650.0
|
opposite-strand
|
Hemerythrin HHE cation binding domain
|
4
|
PF00934.22
|
1.0
|
2
|
29.0
|
opposite-strand
|
PE family
|
5
|
PF07931.14
|
1.0
|
2
|
49.0
|
same-strand
|
Chloramphenicol phosphotransferase-like protein
|
6
|
PF09335.13
|
1.0
|
2
|
874.0
|
same-strand
|
SNARE associated Golgi protein
|
7
|
PF01740.23
|
1.0
|
2
|
1693.0
|
same-strand
|
STAS domain
|
8
|
PF13466.8
|
1.0
|
2
|
1693.0
|
same-strand
|
STAS domain
|
9
|
PF02694.17
|
1.0
|
2
|
2314.0
|
opposite-strand
|
Uncharacterised BCR, YnfA/UPF0060 family
|
10
|
PF01022.22
|
1.0
|
2
|
2766.0
|
opposite-strand
|
Bacterial regulatory protein, arsR family
|
11
|
PF12840.9
|
1.0
|
2
|
2766.0
|
opposite-strand
|
Helix-turn-helix domain
|
++ More..