ProsmORF-pred
Result : P64992
Protein Information
Information Type Description
Protein name Uncharacterized protein Mb2339
NCBI Accession ID LT708304.1
Organism Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97)
Left 2566492
Right 2566761
Strand +
Nucleotide Sequence ATGATGAAGGAGATCGAGCTCCATCTGGTTGACGCTGCCGCCCCCAGCGGCGAGATTGCGATCAAGGACCTAGCCGCCCTCGCGACTGCTCTGCAGGAATTGACGACTCGAATCAGCCGCGACCCAATCAACACGCCCGGGCCTGGTCGCACAAAACAGTTTATGGAAGAGCTCTCGCAACTGGCCAGCGCCCCCGGGCCAGACATCGACGGCGGGATCGACCTAACTGACGATGAATTCCAGGCGTTTCTTCAGGCGGCGCGTTCGTGA
Sequence MMKEIELHLVDAAAPSGEIAIKDLAALATALQELTTRISRDPINTPGPGRTKQFMEELSQLASAPGPDIDGGIDLTDDEFQAFLQAARS
Source of smORF Swiss-Prot
Function
Pubmed ID 12788972 28385856
Domain
Functional Category Others
Uniprot ID P64992
ORF Length (Amino Acid) 89
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Conservation Analysis
Conservation Analysis
No. of Species: 2
Sr.No. Left Position Right Position Strand NCBI Accession id Species Name
1 2584486 2584755 + NC_000962.3 Mycobacterium tuberculosis H37Rv
2 2641593 2641862 + NC_015848.1 Mycobacterium canettii CIPT 140010059
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Neighborhood Conservation Analysis
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Conservation Analysis
Neighborhood Representative Chosen(Species): NC_000962.3
Sr.No. Domain Co-occurrence Frequency No. of species in which domain occurs with smORF Median distance b/w smORF and domain bearing ORFs Orientation relative to smORF PFAM Information
1 PF12728.9 1.0 2 706.5 same-strand Helix-turn-helix domain
2 PF19289.1 1.0 2 1847.0 opposite-strand PmbA/TldA metallopeptidase C-terminal domain
3 PF00528.24 1.0 2 4512.5 same-strand Binding-protein-dependent transport system inner membrane component
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