* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_017379.1
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF02777.20
|
1.0
|
2
|
2633.5
|
opposite-strand
|
Iron/manganese superoxide dismutases, C-terminal domain
|
2
|
PF00081.24
|
1.0
|
2
|
2633.5
|
opposite-strand
|
Iron/manganese superoxide dismutases, alpha-hairpin domain
|
3
|
PF13649.8
|
1.0
|
2
|
1861.5
|
opposite-strand
|
Methyltransferase domain
|
4
|
PF08242.14
|
1.0
|
2
|
1861.5
|
opposite-strand
|
Methyltransferase domain
|
5
|
PF08241.14
|
1.0
|
2
|
1861.5
|
opposite-strand
|
Methyltransferase domain
|
6
|
PF00270.31
|
1.0
|
2
|
-15.0
|
same-strand
|
DEAD/DEAH box helicase
|
7
|
PF04851.17
|
1.0
|
2
|
-15.0
|
same-strand
|
Type III restriction enzyme, res subunit
|
8
|
PF18074.3
|
1.0
|
2
|
-15.0
|
same-strand
|
Primosomal protein N C-terminal domain
|
9
|
PF18319.3
|
1.0
|
2
|
-15.0
|
same-strand
|
PriA DNA helicase Cys-rich region (CRR) domain
|
10
|
PF17764.3
|
1.0
|
2
|
-15.0
|
same-strand
|
3'DNA-binding domain (3'BD)
|
11
|
PF06005.14
|
1.0
|
2
|
13.0
|
same-strand
|
Cell division protein ZapB
|
++ More..