* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_017379.1
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF00015.23
|
0.6
|
3
|
1235
|
same-strand
|
Methyl-accepting chemotaxis protein (MCP) signalling domain
|
2
|
PF00380.21
|
0.6
|
3
|
701
|
same-strand
|
Ribosomal protein S9/S16
|
3
|
PF00572.20
|
0.6
|
3
|
279
|
same-strand
|
Ribosomal protein L13
|
4
|
PF06039.17
|
0.6
|
3
|
7
|
same-strand
|
Malate:quinone oxidoreductase (Mqo)
|
5
|
PF01266.26
|
0.6
|
3
|
7
|
same-strand
|
FAD dependent oxidoreductase
|
6
|
PF00877.21
|
0.8
|
4
|
1417.0
|
same-strand
|
NlpC/P60 family
|
7
|
PF12913.9
|
1.0
|
5
|
1421
|
same-strand
|
SH3 domain (SH3b1 type)
|
8
|
PF12912.9
|
1.0
|
5
|
1421
|
same-strand
|
NLPC P60 stabilising domain, N term
|
9
|
PF12914.9
|
1.0
|
5
|
1421
|
same-strand
|
SH3 domain of SH3b2 type
|
10
|
PF04539.18
|
0.6
|
3
|
2807
|
same-strand
|
Sigma-70 region 3
|
11
|
PF04542.16
|
0.6
|
3
|
2807
|
same-strand
|
Sigma-70 region 2
|
12
|
PF04545.18
|
0.6
|
3
|
2807
|
same-strand
|
Sigma-70, region 4
|
13
|
PF00140.22
|
0.6
|
3
|
2807
|
same-strand
|
Sigma-70 factor, region 1.2
|
14
|
PF01048.22
|
0.6
|
3
|
5017
|
same-strand
|
Phosphorylase superfamily
|
15
|
PF00698.23
|
0.6
|
3
|
5723
|
same-strand
|
Acyl transferase domain
|
++ More..