Result : P64623
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | Uncharacterized protein YhdV |
| NCBI Accession ID | AE005174.2 |
| Organism | Escherichia coli O157:H7 |
| Left | 4220612 |
| Right | 4220833 |
| Strand | + |
| Nucleotide Sequence | ATGAAAAGATTAATTCCTGTGGCATTGCTCACCGCATTGCTGGCGGGCTGTGCTCACGATTCGCCCTGCGTTCCGGTTTATGACGATCAGGGTCGTCTGGTTCACACCAATACCTGTATGAAAGGCACGACTCAGGATAACTGGGAAACGGCTGGGGCTATTGCTGGCGGGGCAGCGGCTGTTGCTGGCCTGACGATGGGGATCATCGCTCTGTCGAAATAA |
| Sequence | MKRLIPVALLTALLAGCAHDSPCVPVYDDQGRLVHTNTCMKGTTQDNWETAGAIAGGAAAVAGLTMGIIALSK |
| Source of smORF | Swiss-Prot |
| Function | |
| Pubmed ID | 11206551 11258796 |
| Domain | |
| Functional Category | Others |
| Uniprot ID | P64623 |
| ORF Length (Amino Acid) | 73 |
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| Conservation Analysis |
No. of Species: 66
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 3418390 | 3418611 | + | NC_000913.3 | Escherichia coli str. K-12 substr. MG1655 |
| 2 | 1687914 | 1688135 | - | NZ_LT556085.1 | Citrobacter amalonaticus |
| 3 | 5440245 | 5440466 | + | NZ_CP045205.1 | Citrobacter telavivensis |
| 4 | 4153522 | 4153743 | + | NC_002695.2 | Escherichia coli O157:H7 str. Sakai |
| 5 | 2339753 | 2339974 | + | NZ_CP057657.1 | Escherichia fergusonii |
| 6 | 3565629 | 3565850 | + | NC_003197.2 | Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 |
| 7 | 3921729 | 3921950 | + | NZ_LR134340.1 | Escherichia marmotae |
| 8 | 1415978 | 1416199 | + | NZ_CP053416.1 | Salmonella bongori |
| 9 | 4792019 | 4792240 | - | NC_013716.1 | Citrobacter rodentium ICC168 |
| 10 | 4316923 | 4317144 | + | NC_009792.1 | Citrobacter koseri ATCC BAA-895 |
| 11 | 479625 | 479846 | - | NZ_CP013990.1 | Leclercia adecarboxylata |
| 12 | 3860564 | 3860785 | - | NZ_CP038469.1 | Citrobacter tructae |
| 13 | 3398500 | 3398721 | + | NZ_AP014857.1 | Escherichia albertii |
| 14 | 2862256 | 2862477 | - | NZ_CP044098.1 | Citrobacter portucalensis |
| 15 | 2220407 | 2220628 | + | NZ_CP033744.1 | Citrobacter freundii |
| 16 | 3775936 | 3776157 | + | NZ_CP013940.1 | Cronobacter malonaticus LMG 23826 |
| 17 | 375526 | 375747 | - | NZ_CP012257.1 | Cronobacter universalis NCTC 9529 |
| 18 | 3653224 | 3653445 | + | NZ_CP012268.1 | Cronobacter muytjensii ATCC 51329 |
| 19 | 385696 | 385917 | - | NZ_CP012266.1 | Cronobacter dublinensis subsp. dublinensis LMG 23823 |
| 20 | 3055762 | 3055983 | + | NZ_CP027107.1 | Cronobacter sakazakii |
| 21 | 2148645 | 2148866 | - | NZ_CP042941.1 | Atlantibacter hermannii |
| 22 | 390743 | 390964 | - | NZ_CP012264.1 | Cronobacter condimenti 1330 |
| 23 | 2963697 | 2963918 | + | NZ_CP023529.1 | Lelliottia amnigena |
| 24 | 2662522 | 2662743 | + | NZ_CP016337.1 | Kosakonia sacchari |
| 25 | 4412597 | 4412818 | + | NZ_CP063425.1 | Kosakonia pseudosacchari |
| 26 | 339039 | 339260 | - | NC_017910.1 | Shimwellia blattae DSM 4481 = NBRC 105725 |
| 27 | 1433528 | 1433749 | + | NZ_CP071320.1 | Serratia ureilytica |
| 28 | 2981169 | 2981390 | - | NZ_CP016948.1 | Serratia surfactantfaciens |
| 29 | 3696922 | 3697143 | - | NZ_LT906479.1 | Serratia ficaria |
| 30 | 3665526 | 3665747 | - | NZ_CP038662.1 | Serratia nematodiphila |
| 31 | 3673351 | 3673572 | - | NZ_CP048784.1 | Serratia liquefaciens |
| 32 | 3743780 | 3744001 | - | NZ_LR134494.1 | Serratia quinivorans |
| 33 | 3795346 | 3795567 | - | NC_015567.1 | Serratia plymuthica AS9 |
| 34 | 31400 | 31621 | - | NZ_CP041251.1 | Raoultella electrica |
| 35 | 4840831 | 4841052 | + | NC_016845.1 | Klebsiella pneumoniae subsp. pneumoniae HS11286 |
| 36 | 419733 | 419954 | + | NZ_CP020388.1 | Pluralibacter gergoviae |
| 37 | 450188 | 450409 | - | NZ_CP065838.1 | Klebsiella quasipneumoniae |
| 38 | 459936 | 460157 | - | NZ_CP054254.1 | Klebsiella variicola |
| 39 | 4840044 | 4840265 | + | NZ_CP015113.1 | Kosakonia radicincitans |
| 40 | 775848 | 776069 | + | NZ_CP050150.1 | Hafnia alvei |
| 41 | 483983 | 484204 | - | NZ_CP014007.2 | Kosakonia oryzae |
| 42 | 1995125 | 1995346 | + | NZ_AP019007.1 | Enterobacter oligotrophicus |
| 43 | 4169315 | 4169536 | + | NZ_AP022508.1 | Enterobacter bugandensis |
| 44 | 4243286 | 4243507 | + | NZ_CP027986.1 | Enterobacter sichuanensis |
| 45 | 4262224 | 4262445 | + | NZ_CP017184.1 | Enterobacter roggenkampii |
| 46 | 4276613 | 4276834 | + | NC_015968.1 | Enterobacter soli |
| 47 | 3037385 | 3037606 | - | NZ_CP025034.2 | Enterobacter sp. SGAir0187 |
| 48 | 4139964 | 4140185 | - | NZ_CP017279.1 | Enterobacter ludwigii |
| 49 | 4084459 | 4084680 | - | NZ_CP045769.1 | Enterobacter cancerogenus |
| 50 | 4598332 | 4598553 | + | NZ_CP043318.1 | Enterobacter chengduensis |
| 51 | 1011489 | 1011710 | - | NZ_CP051548.1 | Phytobacter diazotrophicus |
| 52 | 4366243 | 4366464 | + | NZ_CP009756.1 | Enterobacter cloacae |
| 53 | 531856 | 532077 | - | NZ_CP011254.1 | Serratia fonticola |
| 54 | 3591914 | 3592135 | - | NZ_CP045300.1 | Kosakonia arachidis |
| 55 | 266489 | 266710 | - | NZ_CP023525.1 | Cedecea neteri |
| 56 | 271192 | 271413 | - | NZ_LR134201.1 | Cedecea lapagei |
| 57 | 438248 | 438469 | - | NZ_CP035129.1 | Kosakonia cowanii |
| 58 | 451024 | 451245 | - | NZ_CP041247.1 | Raoultella electrica |
| 59 | 489118 | 489339 | - | NZ_CP046672.1 | Raoultella ornithinolytica |
| 60 | 1227423 | 1227644 | + | NZ_CP026047.1 | Raoultella planticola |
| 61 | 452508 | 452729 | - | NZ_CP050508.1 | Raoultella terrigena |
| 62 | 422214 | 422435 | - | NZ_CP054058.1 | Scandinavium goeteborgense |
| 63 | 572326 | 572547 | - | NZ_CP036175.1 | Klebsiella huaxiensis |
| 64 | 533135 | 533356 | - | NZ_CP060111.1 | Klebsiella michiganensis |
| 65 | 454109 | 454330 | - | NZ_LR134475.1 | Klebsiella aerogenes |
| 66 | 487204 | 487425 | - | NZ_CP045845.1 | Kluyvera intermedia |
| 67 | 425862 | 426083 | - | NZ_AP023184.1 | Buttiauxella agrestis |
| 68 | 4146276 | 4146497 | + | NZ_CP012871.1 | [Enterobacter] lignolyticus |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_LT556085.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF08361.13 | 0.64 | 42 | 4946 | opposite-strand | MAATS-type transcriptional repressor, C-terminal region |
| 2 | PF00440.25 | 0.64 | 42 | 4946 | opposite-strand | Bacterial regulatory proteins, tetR family |
| 3 | PF16576.7 | 0.67 | 44 | 3408 | same-strand | Barrel-sandwich domain of CusB or HlyD membrane-fusion |
| 4 | PF00529.22 | 0.64 | 42 | 3414 | same-strand | Cation efflux system protein CusB domain 1 |
| 5 | PF13437.8 | 0.67 | 44 | 3408 | same-strand | HlyD family secretion protein |
| 6 | PF13533.8 | 0.62 | 41 | 3415.5 | same-strand | Biotin-lipoyl like |
| 7 | PF00873.21 | 0.67 | 44 | 294.0 | same-strand | AcrB/AcrD/AcrF family |
| 8 | PF00528.24 | 0.64 | 42 | 2664.0 | same-strand | Binding-protein-dependent transport system inner membrane component |
| 9 | PF00005.29 | 0.64 | 42 | 3869 | same-strand | ABC transporter |
| 10 | PF00497.22 | 0.64 | 42 | 475.0 | same-strand | Bacterial extracellular solute-binding proteins, family 3 |
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