Result : P64615
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | Uncharacterized protein YhcN |
| NCBI Accession ID | |
| Organism | Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) |
| Left | |
| Right | |
| Strand | |
| Nucleotide Sequence | |
| Sequence | MKIKTTVAALSVLSVLSFGAFAADSIDAAQAQNREAIGTVSVSGVASSPMDMREMLNKKAEEKGATAYQITEARSGDTWHATAELYK |
| Source of smORF | Swiss-Prot |
| Function | The ORF matches to the profile of cl11507. Profile Description: Protein of unknown function (DUF1471). hypothetical protein; Provisional |
| Pubmed ID | 12471157 |
| Domain | CDD:416304 |
| Functional Category | Others |
| Uniprot ID | P64615 |
| ORF Length (Amino Acid) | 87 |
++ More..
| Conservation Analysis |
No. of Species: 96
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 3887944 | 3888207 | + | NZ_LR134340.1 | Escherichia marmotae |
| 2 | 3385538 | 3385801 | + | NC_000913.3 | Escherichia coli str. K-12 substr. MG1655 |
| 3 | 4120903 | 4121166 | + | NC_002695.2 | Escherichia coli O157:H7 str. Sakai |
| 4 | 3373389 | 3373652 | + | NC_004337.2 | Shigella flexneri 2a str. 301 |
| 5 | 438371 | 438634 | - | NZ_CP061527.1 | Shigella dysenteriae |
| 6 | 3359590 | 3359853 | + | NZ_AP014857.1 | Escherichia albertii |
| 7 | 2306179 | 2306442 | + | NZ_CP057657.1 | Escherichia fergusonii |
| 8 | 1725514 | 1725777 | - | NZ_LT556085.1 | Citrobacter amalonaticus |
| 9 | 5399778 | 5400041 | + | NZ_CP045205.1 | Citrobacter telavivensis |
| 10 | 4837923 | 4838186 | - | NC_013716.1 | Citrobacter rodentium ICC168 |
| 11 | 4280509 | 4280772 | + | NC_009792.1 | Citrobacter koseri ATCC BAA-895 |
| 12 | 4559702 | 4559965 | + | NZ_CP043318.1 | Enterobacter chengduensis |
| 13 | 4560077 | 4560343 | + | NZ_CP043318.1 | Enterobacter chengduensis |
| 14 | 4130690 | 4130953 | + | NZ_AP022508.1 | Enterobacter bugandensis |
| 15 | 4131064 | 4131330 | + | NZ_AP022508.1 | Enterobacter bugandensis |
| 16 | 4329337 | 4329600 | + | NZ_CP009756.1 | Enterobacter cloacae |
| 17 | 4329710 | 4329976 | + | NZ_CP009756.1 | Enterobacter cloacae |
| 18 | 4122178 | 4122441 | - | NZ_CP045769.1 | Enterobacter cancerogenus |
| 19 | 4121809 | 4122075 | - | NZ_CP045769.1 | Enterobacter cancerogenus |
| 20 | 4178565 | 4178828 | - | NZ_CP017279.1 | Enterobacter ludwigii |
| 21 | 4178188 | 4178454 | - | NZ_CP017279.1 | Enterobacter ludwigii |
| 22 | 4204661 | 4204924 | + | NZ_CP027986.1 | Enterobacter sichuanensis |
| 23 | 4205033 | 4205299 | + | NZ_CP027986.1 | Enterobacter sichuanensis |
| 24 | 1042004 | 1042267 | - | NZ_CP051548.1 | Phytobacter diazotrophicus |
| 25 | 1041645 | 1041908 | - | NZ_CP051548.1 | Phytobacter diazotrophicus |
| 26 | 567380 | 567643 | - | NZ_CP060111.1 | Klebsiella michiganensis |
| 27 | 567011 | 567277 | - | NZ_CP060111.1 | Klebsiella michiganensis |
| 28 | 3075977 | 3076240 | - | NZ_CP025034.2 | Enterobacter sp. SGAir0187 |
| 29 | 3075600 | 3075866 | - | NZ_CP025034.2 | Enterobacter sp. SGAir0187 |
| 30 | 482303 | 482566 | - | NZ_CP065838.1 | Klebsiella quasipneumoniae |
| 31 | 481937 | 482203 | - | NZ_CP065838.1 | Klebsiella quasipneumoniae |
| 32 | 1958536 | 1958799 | + | NZ_AP019007.1 | Enterobacter oligotrophicus |
| 33 | 1958907 | 1959173 | + | NZ_AP019007.1 | Enterobacter oligotrophicus |
| 34 | 492197 | 492460 | - | NZ_CP054254.1 | Klebsiella variicola |
| 35 | 491832 | 492098 | - | NZ_CP054254.1 | Klebsiella variicola |
| 36 | 5204176 | 5204439 | - | NZ_CP011602.1 | Phytobacter ursingii |
| 37 | 5203817 | 5204080 | - | NZ_CP011602.1 | Phytobacter ursingii |
| 38 | 605058 | 605321 | - | NZ_CP036175.1 | Klebsiella huaxiensis |
| 39 | 604687 | 604953 | - | NZ_CP036175.1 | Klebsiella huaxiensis |
| 40 | 4223599 | 4223862 | + | NZ_CP017184.1 | Enterobacter roggenkampii |
| 41 | 4223973 | 4224239 | + | NZ_CP017184.1 | Enterobacter roggenkampii |
| 42 | 1198919 | 1199182 | + | NZ_CP026047.1 | Raoultella planticola |
| 43 | 1199285 | 1199551 | + | NZ_CP026047.1 | Raoultella planticola |
| 44 | 517592 | 517855 | - | NZ_CP046672.1 | Raoultella ornithinolytica |
| 45 | 517222 | 517488 | - | NZ_CP046672.1 | Raoultella ornithinolytica |
| 46 | 487044 | 487307 | - | NZ_LR134475.1 | Klebsiella aerogenes |
| 47 | 486677 | 486943 | - | NZ_LR134475.1 | Klebsiella aerogenes |
| 48 | 4792681 | 4792944 | + | NC_016845.1 | Klebsiella pneumoniae subsp. pneumoniae HS11286 |
| 49 | 4793043 | 4793309 | + | NC_016845.1 | Klebsiella pneumoniae subsp. pneumoniae HS11286 |
| 50 | 2925854 | 2926117 | + | NZ_CP023529.1 | Lelliottia amnigena |
| 51 | 2926225 | 2926491 | + | NZ_CP023529.1 | Lelliottia amnigena |
| 52 | 4221095 | 4221358 | + | NC_015968.1 | Enterobacter soli |
| 53 | 4221465 | 4221731 | + | NC_015968.1 | Enterobacter soli |
| 54 | 3528870 | 3529133 | + | NC_003197.2 | Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 |
| 55 | 3529237 | 3529503 | + | NC_003197.2 | Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 |
| 56 | 485727 | 485990 | - | NZ_CP050508.1 | Raoultella terrigena |
| 57 | 485356 | 485622 | - | NZ_CP050508.1 | Raoultella terrigena |
| 58 | 517445 | 517708 | - | NZ_CP013990.1 | Leclercia adecarboxylata |
| 59 | 517065 | 517331 | - | NZ_CP013990.1 | Leclercia adecarboxylata |
| 60 | 460555 | 460818 | - | NZ_CP054058.1 | Scandinavium goeteborgense |
| 61 | 460179 | 460445 | - | NZ_CP054058.1 | Scandinavium goeteborgense |
| 62 | 1378759 | 1379022 | + | NZ_CP053416.1 | Salmonella bongori |
| 63 | 1379125 | 1379391 | + | NZ_CP053416.1 | Salmonella bongori |
| 64 | 479349 | 479612 | - | NZ_CP041247.1 | Raoultella electrica |
| 65 | 478980 | 479246 | - | NZ_CP041247.1 | Raoultella electrica |
| 66 | 4112346 | 4112609 | + | NZ_CP012871.1 | [Enterobacter] lignolyticus |
| 67 | 4112723 | 4112989 | + | NZ_CP012871.1 | [Enterobacter] lignolyticus |
| 68 | 524404 | 524667 | - | NZ_CP045845.1 | Kluyvera intermedia |
| 69 | 524027 | 524293 | - | NZ_CP045845.1 | Kluyvera intermedia |
| 70 | 3615209 | 3615472 | + | NZ_CP012268.1 | Cronobacter muytjensii ATCC 51329 |
| 71 | 3615590 | 3615856 | + | NZ_CP012268.1 | Cronobacter muytjensii ATCC 51329 |
| 72 | 3018493 | 3018756 | + | NZ_CP027107.1 | Cronobacter sakazakii |
| 73 | 3018871 | 3019137 | + | NZ_CP027107.1 | Cronobacter sakazakii |
| 74 | 413467 | 413730 | - | NZ_CP012257.1 | Cronobacter universalis NCTC 9529 |
| 75 | 413095 | 413361 | - | NZ_CP012257.1 | Cronobacter universalis NCTC 9529 |
| 76 | 4809194 | 4809457 | + | NZ_CP015113.1 | Kosakonia radicincitans |
| 77 | 4809556 | 4809819 | + | NZ_CP015113.1 | Kosakonia radicincitans |
| 78 | 3737947 | 3738210 | + | NZ_CP013940.1 | Cronobacter malonaticus LMG 23826 |
| 79 | 3738327 | 3738593 | + | NZ_CP013940.1 | Cronobacter malonaticus LMG 23826 |
| 80 | 514810 | 515073 | - | NZ_CP014007.2 | Kosakonia oryzae |
| 81 | 514448 | 514711 | - | NZ_CP014007.2 | Kosakonia oryzae |
| 82 | 428679 | 428942 | - | NZ_CP012264.1 | Cronobacter condimenti 1330 |
| 83 | 428295 | 428561 | - | NZ_CP012264.1 | Cronobacter condimenti 1330 |
| 84 | 423625 | 423888 | - | NZ_CP012266.1 | Cronobacter dublinensis subsp. dublinensis LMG 23823 |
| 85 | 423242 | 423508 | - | NZ_CP012266.1 | Cronobacter dublinensis subsp. dublinensis LMG 23823 |
| 86 | 4381835 | 4382098 | + | NZ_CP063425.1 | Kosakonia pseudosacchari |
| 87 | 462577 | 462840 | - | NZ_AP023184.1 | Buttiauxella agrestis |
| 88 | 462180 | 462446 | - | NZ_AP023184.1 | Buttiauxella agrestis |
| 89 | 2631764 | 2632027 | + | NZ_CP016337.1 | Kosakonia sacchari |
| 90 | 3620659 | 3620922 | - | NZ_CP045300.1 | Kosakonia arachidis |
| 91 | 301487 | 301750 | - | NZ_LR134201.1 | Cedecea lapagei |
| 92 | 301097 | 301363 | - | NZ_LR134201.1 | Cedecea lapagei |
| 93 | 369013 | 369276 | + | NZ_CP020388.1 | Pluralibacter gergoviae |
| 94 | 369418 | 369684 | + | NZ_CP020388.1 | Pluralibacter gergoviae |
| 95 | 474019 | 474282 | - | NZ_CP035129.1 | Kosakonia cowanii |
| 96 | 295655 | 295918 | - | NZ_CP023525.1 | Cedecea neteri |
| 97 | 295264 | 295530 | - | NZ_CP023525.1 | Cedecea neteri |
| 98 | 653681 | 653944 | + | NZ_CP040428.1 | Jejubacter calystegiae |
| 99 | 4527387 | 4527650 | + | NC_014306.1 | Erwinia billingiae Eb661 |
| 100 | 4527766 | 4528035 | + | NC_014306.1 | Erwinia billingiae Eb661 |
| 101 | 466584 | 466847 | - | NZ_CP061511.1 | Mixta calida |
| 102 | 465848 | 466111 | - | NZ_CP061511.1 | Mixta calida |
| 103 | 466199 | 466468 | - | NZ_CP061511.1 | Mixta calida |
| 104 | 541104 | 541367 | - | NZ_CP026377.1 | Mixta gaviniae |
| 105 | 540369 | 540632 | - | NZ_CP026377.1 | Mixta gaviniae |
| 106 | 540719 | 540988 | - | NZ_CP026377.1 | Mixta gaviniae |
| 107 | 2184177 | 2184440 | - | NZ_CP042941.1 | Atlantibacter hermannii |
| 108 | 2183801 | 2184067 | - | NZ_CP042941.1 | Atlantibacter hermannii |
| 109 | 3551695 | 3551958 | + | NZ_CP034148.1 | Pantoea agglomerans |
| 110 | 3552407 | 3552670 | + | NZ_CP034148.1 | Pantoea agglomerans |
| 111 | 4289769 | 4290032 | - | NZ_CP028271.1 | Mixta intestinalis |
| 112 | 519436 | 519699 | - | NZ_CP045720.1 | Pantoea eucalypti |
| 113 | 518725 | 518988 | - | NZ_CP045720.1 | Pantoea eucalypti |
| 114 | 395576 | 395839 | - | NZ_LR134494.1 | Serratia quinivorans |
| 115 | 395189 | 395452 | - | NZ_LR134494.1 | Serratia quinivorans |
| 116 | 529510 | 529773 | - | NZ_CP038853.1 | Pantoea vagans |
| 117 | 528803 | 529066 | - | NZ_CP038853.1 | Pantoea vagans |
| 118 | 1124664 | 1124927 | + | NZ_CP019706.1 | Pantoea alhagi |
| 119 | 1125048 | 1125317 | + | NZ_CP019706.1 | Pantoea alhagi |
| 120 | 3895098 | 3895364 | - | NZ_CP038469.1 | Citrobacter tructae |
| 121 | 394838 | 395101 | - | NZ_CP048784.1 | Serratia liquefaciens |
| 122 | 394450 | 394713 | - | NZ_CP048784.1 | Serratia liquefaciens |
| 123 | 2896899 | 2897165 | - | NZ_CP044098.1 | Citrobacter portucalensis |
| 124 | 2359445 | 2359708 | - | NZ_CP011254.1 | Serratia fonticola |
| 125 | 2359048 | 2359311 | - | NZ_CP011254.1 | Serratia fonticola |
| 126 | 456002 | 456265 | - | NC_015567.1 | Serratia plymuthica AS9 |
| 127 | 351355 | 351618 | - | NC_013961.1 | Erwinia amylovora CFBP1430 |
| 128 | 350974 | 351243 | - | NC_013961.1 | Erwinia amylovora CFBP1430 |
| 129 | 4630688 | 4630951 | + | NZ_CP071320.1 | Serratia ureilytica |
| 130 | 4631072 | 4631335 | + | NZ_CP071320.1 | Serratia ureilytica |
| 131 | 4875794 | 4876057 | - | NZ_CP016948.1 | Serratia surfactantfaciens |
| 132 | 4875410 | 4875673 | - | NZ_CP016948.1 | Serratia surfactantfaciens |
| 133 | 405114 | 405377 | - | NZ_CP038662.1 | Serratia nematodiphila |
| 134 | 404730 | 404993 | - | NZ_CP038662.1 | Serratia nematodiphila |
| 135 | 351258 | 351521 | - | NC_010694.1 | Erwinia tasmaniensis Et1/99 |
| 136 | 350878 | 351147 | - | NC_010694.1 | Erwinia tasmaniensis Et1/99 |
| 137 | 519303 | 519566 | - | NC_017554.1 | Pantoea ananatis PA13 |
| 138 | 518599 | 518862 | - | NC_017554.1 | Pantoea ananatis PA13 |
| 139 | 1939718 | 1939981 | - | NZ_CP065640.1 | Serratia rubidaea |
| 140 | 1939327 | 1939590 | - | NZ_CP065640.1 | Serratia rubidaea |
| 141 | 537392 | 537655 | - | NZ_LT906479.1 | Serratia ficaria |
| 142 | 537005 | 537268 | - | NZ_LT906479.1 | Serratia ficaria |
| 143 | 2185686 | 2185952 | + | NZ_CP033744.1 | Citrobacter freundii |
| 144 | 2376942 | 2377205 | + | NZ_CP049115.1 | Pantoea stewartii |
| 145 | 2377646 | 2377909 | + | NZ_CP049115.1 | Pantoea stewartii |
| 146 | 547487 | 547750 | - | NZ_CP050150.1 | Hafnia alvei |
| 147 | 547087 | 547350 | - | NZ_CP050150.1 | Hafnia alvei |
| 148 | 4189540 | 4189803 | + | NZ_CP011118.1 | Yersinia enterocolitica |
| 149 | 483586 | 483849 | - | NZ_LN907827.1 | Erwinia gerundensis |
| 150 | 483225 | 483488 | - | NZ_LN907827.1 | Erwinia gerundensis |
| 151 | 486594 | 486857 | - | NZ_CP032487.1 | Yersinia hibernica |
| 152 | 4031925 | 4032188 | + | NZ_LR134373.1 | Yersinia pseudotuberculosis |
| 153 | 253505 | 253768 | + | NZ_CP007044.2 | Chania multitudinisentens RB-25 |
| 154 | 3195875 | 3196138 | - | NZ_CP009781.1 | Yersinia aldovae 670-83 |
| 155 | 549296 | 549559 | - | NZ_CP043727.1 | Yersinia canariae |
| 156 | 548874 | 549137 | - | NZ_CP043727.1 | Yersinia canariae |
| 157 | 1783832 | 1784095 | - | NZ_CP054043.1 | Yersinia mollaretii ATCC 43969 |
| 158 | 3983662 | 3983925 | + | NZ_CP006569.1 | Sodalis praecaptivus |
| 159 | 3382338 | 3382601 | - | NZ_CP009787.1 | Yersinia rohdei |
| 160 | 3381936 | 3382199 | - | NZ_CP009787.1 | Yersinia rohdei |
| 161 | 4146077 | 4146340 | - | NZ_CP067057.1 | Rahnella aceris |
| 162 | 4146542 | 4146805 | - | NZ_CP067057.1 | Rahnella aceris |
| 163 | 4177701 | 4177964 | + | NZ_CP046293.1 | Yersinia intermedia |
| 164 | 2037185 | 2037448 | + | NZ_CP014136.1 | Gibbsiella quercinecans |
| 165 | 3636195 | 3636464 | + | NZ_CP023567.1 | Erwinia pyrifoliae |
| 166 | 3635820 | 3636083 | + | NZ_CP023567.1 | Erwinia pyrifoliae |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_CP065838.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF06295.14 | 0.6 | 58 | 4966 | same-strand | Protein of unknown function (DUF1043) |
| 2 | PF00595.26 | 0.65 | 62 | 3174 | same-strand | PDZ domain |
| 3 | PF13365.8 | 0.65 | 62 | 3156.0 | same-strand | Trypsin-like peptidase domain |
| 4 | PF13180.8 | 0.65 | 62 | 3156.0 | same-strand | PDZ domain |
| 5 | PF17820.3 | 0.65 | 62 | 3478 | same-strand | PDZ domain |
| 6 | PF00089.28 | 0.65 | 62 | 3156.0 | same-strand | Trypsin |
| 7 | PF02866.20 | 1.0 | 96 | 1373.5 | opposite-strand | lactate/malate dehydrogenase, alpha/beta C-terminal domain |
| 8 | PF00056.25 | 1.0 | 96 | 1373.5 | opposite-strand | lactate/malate dehydrogenase, NAD binding domain |
| 9 | PF01316.23 | 1.0 | 96 | 449.0 | same-strand | Arginine repressor, DNA binding domain |
| 10 | PF02863.20 | 1.0 | 96 | 449.0 | same-strand | Arginine repressor, C-terminal domain |
| 11 | PF04632.14 | 0.76 | 73 | 1927 | opposite-strand | Fusaric acid resistance protein family |
| 12 | PF13515.8 | 0.76 | 73 | 1927 | opposite-strand | Fusaric acid resistance protein-like |
| 13 | PF13533.8 | 0.75 | 72 | 3899 | opposite-strand | Biotin-lipoyl like |
| 14 | PF16576.7 | 0.75 | 72 | 3899 | opposite-strand | Barrel-sandwich domain of CusB or HlyD membrane-fusion |
| 15 | PF13437.8 | 0.71 | 68 | 3899.5 | opposite-strand | HlyD family secretion protein |
| 16 | PF00529.22 | 0.75 | 72 | 3899 | opposite-strand | Cation efflux system protein CusB domain 1 |
| 17 | PF07869.14 | 0.68 | 65 | 3787 | opposite-strand | Protein of unknown function (DUF1656) |
| 18 | PF07338.15 | 0.77 | 74 | 111 | same-strand | Protein of unknown function (DUF1471) |
++ More..