Result : P64577
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | Uncharacterized protein YghW |
| NCBI Accession ID | AE005674.2 |
| Organism | Shigella flexneri |
| Left | 3141887 |
| Right | 3142174 |
| Strand | - |
| Nucleotide Sequence | ATGAATAACCATTTTGGTAAAGGCTTAATGGCGGGATTAAAAGCAACGCATGCCGACAGTGCGGTTAATGTGACAAAATTCTGTGCCGATTATAAACGCGGTTTTGTATTAGGCTACTCACACAGGATGTACGAAAAGACCGGAGATCGCCAGCTTAGCGCCTGGGAAGCGGGTATTCTGACGCGCCGCTATGGACTGGATAAAGAGATGGTAATGGATTTCTTTCGTGAGAATAATTCCTGTTCTACGTTGCGCTTTTTTATGGCCGGTTATCGCCTCGAAAATTGA |
| Sequence | MNNHFGKGLMAGLKATHADSAVNVTKFCADYKRGFVLGYSHRMYEKTGDRQLSAWEAGILTRRYGLDKEMVMDFFRENNSCSTLRFFMAGYRLEN |
| Source of smORF | Swiss-Prot |
| Function | The ORF matches to the profile of pfam11115. Profile Description: Protein of unknown function (DUF2623). This family is conserved in the Enterobacteriaceae family. Several members are named as YghW. The function is not known. |
| Pubmed ID | 12384590 12704152 |
| Domain | CDD:371383 |
| Functional Category | Others |
| Uniprot ID | P64577 |
| ORF Length (Amino Acid) | 95 |
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| Conservation Analysis |
No. of Species: 40
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 756807 | 757094 | - | NZ_CP061527.1 | Shigella dysenteriae |
| 2 | 3664211 | 3664498 | - | NZ_LR134340.1 | Escherichia marmotae |
| 3 | 3141887 | 3142174 | - | NC_004337.2 | Shigella flexneri 2a str. 301 |
| 4 | 3146450 | 3146737 | - | NC_000913.3 | Escherichia coli str. K-12 substr. MG1655 |
| 5 | 3886931 | 3887218 | - | NC_002695.2 | Escherichia coli O157:H7 str. Sakai |
| 6 | 3126771 | 3127058 | - | NZ_AP014857.1 | Escherichia albertii |
| 7 | 2034027 | 2034314 | - | NZ_CP057657.1 | Escherichia fergusonii |
| 8 | 1997815 | 1998102 | + | NZ_LT556085.1 | Citrobacter amalonaticus |
| 9 | 5104921 | 5105208 | - | NZ_CP045205.1 | Citrobacter telavivensis |
| 10 | 4066161 | 4066448 | - | NC_009792.1 | Citrobacter koseri ATCC BAA-895 |
| 11 | 879081 | 879368 | + | NZ_CP036175.1 | Klebsiella huaxiensis |
| 12 | 1924888 | 1925175 | - | NZ_CP033744.1 | Citrobacter freundii |
| 13 | 3167769 | 3168056 | + | NZ_CP044098.1 | Citrobacter portucalensis |
| 14 | 3854998 | 3855285 | - | NZ_CP012871.1 | [Enterobacter] lignolyticus |
| 15 | 4170033 | 4170320 | + | NZ_CP038469.1 | Citrobacter tructae |
| 16 | 4565737 | 4566024 | - | NZ_CP015113.1 | Kosakonia radicincitans |
| 17 | 726280 | 726567 | + | NZ_CP014007.2 | Kosakonia oryzae |
| 18 | 3858092 | 3858379 | + | NZ_CP016337.1 | Kosakonia sacchari |
| 19 | 4147214 | 4147501 | - | NZ_CP063425.1 | Kosakonia pseudosacchari |
| 20 | 3820660 | 3820947 | + | NZ_CP045300.1 | Kosakonia arachidis |
| 21 | 676258 | 676545 | + | NZ_CP041247.1 | Raoultella electrica |
| 22 | 728391 | 728678 | + | NZ_CP046672.1 | Raoultella ornithinolytica |
| 23 | 1296429 | 1296716 | + | NZ_CP051548.1 | Phytobacter diazotrophicus |
| 24 | 732319 | 732609 | + | NZ_CP045845.1 | Kluyvera intermedia |
| 25 | 995955 | 996242 | - | NZ_CP026047.1 | Raoultella planticola |
| 26 | 718665 | 718952 | + | NZ_CP065838.1 | Klebsiella quasipneumoniae |
| 27 | 5464908 | 5465195 | + | NZ_CP011602.1 | Phytobacter ursingii |
| 28 | 3940335 | 3940622 | - | NC_015968.1 | Enterobacter soli |
| 29 | 1676708 | 1676995 | - | NZ_AP019007.1 | Enterobacter oligotrophicus |
| 30 | 1171639 | 1171926 | - | NZ_CP053416.1 | Salmonella bongori |
| 31 | 4405459 | 4405746 | + | NZ_CP045769.1 | Enterobacter cancerogenus |
| 32 | 742609 | 742896 | + | NZ_CP054254.1 | Klebsiella variicola |
| 33 | 2645039 | 2645326 | - | NZ_CP023529.1 | Lelliottia amnigena |
| 34 | 4572440 | 4572727 | - | NC_016845.1 | Klebsiella pneumoniae subsp. pneumoniae HS11286 |
| 35 | 3313959 | 3314246 | - | NC_003197.2 | Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 |
| 36 | 823519 | 823806 | + | NZ_CP023525.1 | Cedecea neteri |
| 37 | 821714 | 822001 | + | NZ_LR134201.1 | Cedecea lapagei |
| 38 | 2009676 | 2009969 | + | NZ_CP042941.1 | Atlantibacter hermannii |
| 39 | 3401183 | 3401476 | - | NZ_LT906479.1 | Serratia ficaria |
| 40 | 3467132 | 3467419 | - | NZ_LR134494.1 | Serratia quinivorans |
| 41 | 3418018 | 3418305 | - | NZ_CP048784.1 | Serratia liquefaciens |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_LR134340.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF01738.20 | 0.65 | 26 | 1808.5 | same-strand | Dienelactone hydrolase family |
| 2 | PF00248.23 | 0.68 | 27 | 2834.0 | opposite-strand | Aldo/keto reductase family |
| 3 | PF03350.18 | 0.6 | 24 | 2243 | same-strand | Uncharacterized protein family, UPF0114 |
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