Result : P64540
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | Uncharacterized protein YfcL |
| NCBI Accession ID | U00096.3 |
| Organism | Escherichia coli (strain K12) |
| Left | 2443891 |
| Right | 2444169 |
| Strand | - |
| Nucleotide Sequence | ATGATCGCGGAGTTTGAATCACGCATTCTGGCATTAATCGACGGTATGGTTGACCATGCCAGTGATGATGAGTTGTTTGCCAGTGGGTATTTGCGTGGCCACCTGACATTAGCCATCGCAGAACTGGAAAGTGGTGATGACCACTCCGCTCAGGCGGTGCATACGACCGTTAGCCAGAGTCTGGAAAAAGCCATTGGTGCTGGTGAATTGTCGCCGCGTGACCAGGCGCTGGTGACCGATATGTGGGAAAACCTGTTTCAGCAGGCGTCACAGCAGTAA |
| Sequence | MIAEFESRILALIDGMVDHASDDELFASGYLRGHLTLAIAELESGDDHSAQAVHTTVSQSLEKAIGAGELSPRDQALVTDMWENLFQQASQQ |
| Source of smORF | Swiss-Prot |
| Function | The ORF matches to the profile of pfam08891. Profile Description: YfcL protein. This family of proteins are functionally uncharacterized. THey are related to the short YfcL protein from E. coli. |
| Pubmed ID | 9278503 16738553 |
| Domain | CDD:401001 |
| Functional Category | Others |
| Uniprot ID | P64540 |
| ORF Length (Amino Acid) | 92 |
++ More..
| Conservation Analysis |
No. of Species: 159
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 1281625 | 1281903 | + | NZ_CP061527.1 | Shigella dysenteriae |
| 2 | 4354648 | 4354926 | + | NZ_CP057657.1 | Escherichia fergusonii |
| 3 | 2443891 | 2444169 | - | NC_000913.3 | Escherichia coli str. K-12 substr. MG1655 |
| 4 | 3170388 | 3170666 | - | NC_002695.2 | Escherichia coli O157:H7 str. Sakai |
| 5 | 2452013 | 2452291 | - | NC_004337.2 | Shigella flexneri 2a str. 301 |
| 6 | 2988104 | 2988382 | - | NZ_LR134340.1 | Escherichia marmotae |
| 7 | 2445450 | 2445728 | - | NZ_AP014857.1 | Escherichia albertii |
| 8 | 2492047 | 2492322 | - | NC_003197.2 | Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 |
| 9 | 454457 | 454732 | - | NZ_CP053416.1 | Salmonella bongori |
| 10 | 1060728 | 1061003 | - | NZ_AP019007.1 | Enterobacter oligotrophicus |
| 11 | 440749 | 441027 | + | NC_009792.1 | Citrobacter koseri ATCC BAA-895 |
| 12 | 3313462 | 3313737 | - | NZ_CP027986.1 | Enterobacter sichuanensis |
| 13 | 3308814 | 3309089 | - | NZ_CP017184.1 | Enterobacter roggenkampii |
| 14 | 2067324 | 2067602 | - | NZ_CP023529.1 | Lelliottia amnigena |
| 15 | 3424209 | 3424487 | - | NZ_CP009756.1 | Enterobacter cloacae |
| 16 | 197440 | 197721 | + | NZ_CP045769.1 | Enterobacter cancerogenus |
| 17 | 3974193 | 3974471 | + | NZ_CP025034.2 | Enterobacter sp. SGAir0187 |
| 18 | 3593099 | 3593374 | - | NZ_CP043318.1 | Enterobacter chengduensis |
| 19 | 2571163 | 2571441 | - | NZ_CP017279.1 | Enterobacter ludwigii |
| 20 | 30948 | 31226 | + | NZ_CP038469.1 | Citrobacter tructae |
| 21 | 3271239 | 3271514 | - | NC_015968.1 | Enterobacter soli |
| 22 | 2170807 | 2171082 | + | NZ_CP045205.1 | Citrobacter telavivensis |
| 23 | 3935774 | 3936049 | + | NZ_CP044098.1 | Citrobacter portucalensis |
| 24 | 1131757 | 1132032 | - | NZ_CP033744.1 | Citrobacter freundii |
| 25 | 1424224 | 1424505 | + | NZ_CP013990.1 | Leclercia adecarboxylata |
| 26 | 4688395 | 4688679 | - | NZ_LT556085.1 | Citrobacter amalonaticus |
| 27 | 3285065 | 3285340 | - | NZ_AP022508.1 | Enterobacter bugandensis |
| 28 | 416575 | 416853 | + | NZ_CP027107.1 | Cronobacter sakazakii |
| 29 | 1147780 | 1148058 | + | NZ_CP013940.1 | Cronobacter malonaticus LMG 23826 |
| 30 | 3009078 | 3009356 | - | NZ_CP012257.1 | Cronobacter universalis NCTC 9529 |
| 31 | 3141526 | 3141804 | - | NZ_CP012266.1 | Cronobacter dublinensis subsp. dublinensis LMG 23823 |
| 32 | 939517 | 939795 | + | NZ_CP012268.1 | Cronobacter muytjensii ATCC 51329 |
| 33 | 2994698 | 2994976 | - | NZ_CP012264.1 | Cronobacter condimenti 1330 |
| 34 | 230451 | 230726 | - | NZ_CP026047.1 | Raoultella planticola |
| 35 | 1448296 | 1448571 | + | NZ_CP046672.1 | Raoultella ornithinolytica |
| 36 | 1263226 | 1263504 | + | NZ_CP054058.1 | Scandinavium goeteborgense |
| 37 | 1458805 | 1459080 | + | NZ_CP041247.1 | Raoultella electrica |
| 38 | 3008582 | 3008860 | + | NZ_CP042941.1 | Atlantibacter hermannii |
| 39 | 1426795 | 1427076 | + | NZ_CP065838.1 | Klebsiella quasipneumoniae |
| 40 | 1440220 | 1440498 | + | NZ_CP035129.1 | Kosakonia cowanii |
| 41 | 1470151 | 1470432 | + | NZ_CP054254.1 | Klebsiella variicola |
| 42 | 3819555 | 3819836 | - | NC_016845.1 | Klebsiella pneumoniae subsp. pneumoniae HS11286 |
| 43 | 1515303 | 1515578 | + | NZ_CP050508.1 | Raoultella terrigena |
| 44 | 4825877 | 4826155 | - | NZ_CP040428.1 | Jejubacter calystegiae |
| 45 | 4609822 | 4610100 | + | NZ_CP016337.1 | Kosakonia sacchari |
| 46 | 3368837 | 3369115 | - | NZ_CP063425.1 | Kosakonia pseudosacchari |
| 47 | 3228183 | 3228461 | - | NZ_CP012871.1 | [Enterobacter] lignolyticus |
| 48 | 4789753 | 4790031 | - | NZ_CP020388.1 | Pluralibacter gergoviae |
| 49 | 2890235 | 2890513 | - | NC_013716.1 | Citrobacter rodentium ICC168 |
| 50 | 2058066 | 2058344 | + | NZ_CP051548.1 | Phytobacter diazotrophicus |
| 51 | 1651180 | 1651458 | + | NZ_CP060111.1 | Klebsiella michiganensis |
| 52 | 1448602 | 1448886 | - | NZ_CP049115.1 | Pantoea stewartii |
| 53 | 4672028 | 4672306 | + | NZ_CP045300.1 | Kosakonia arachidis |
| 54 | 1693969 | 1694247 | + | NZ_CP036175.1 | Klebsiella huaxiensis |
| 55 | 1392013 | 1392294 | + | NZ_LR134475.1 | Klebsiella aerogenes |
| 56 | 1645297 | 1645575 | + | NZ_CP014007.2 | Kosakonia oryzae |
| 57 | 701326 | 701604 | + | NZ_CP011602.1 | Phytobacter ursingii |
| 58 | 1320863 | 1321138 | + | NZ_AP023184.1 | Buttiauxella agrestis |
| 59 | 1440347 | 1440628 | + | NC_017554.1 | Pantoea ananatis PA13 |
| 60 | 1311495 | 1311770 | + | NZ_CP023525.1 | Cedecea neteri |
| 61 | 1273280 | 1273555 | + | NZ_LR134201.1 | Cedecea lapagei |
| 62 | 3532566 | 3532844 | - | NZ_CP015113.1 | Kosakonia radicincitans |
| 63 | 3170083 | 3170364 | - | NZ_CP026377.1 | Mixta gaviniae |
| 64 | 3007498 | 3007779 | - | NZ_CP061511.1 | Mixta calida |
| 65 | 2718516 | 2718797 | - | NZ_LN907827.1 | Erwinia gerundensis |
| 66 | 1379899 | 1380180 | + | NZ_CP045845.1 | Kluyvera intermedia |
| 67 | 2847575 | 2847856 | + | NZ_CP019706.1 | Pantoea alhagi |
| 68 | 1261699 | 1261983 | + | NZ_CP045720.1 | Pantoea eucalypti |
| 69 | 1210322 | 1210606 | + | NZ_CP038853.1 | Pantoea vagans |
| 70 | 2803653 | 2803937 | - | NZ_CP034148.1 | Pantoea agglomerans |
| 71 | 2296881 | 2297162 | - | NZ_CP028271.1 | Mixta intestinalis |
| 72 | 3700790 | 3701071 | - | NZ_LT906479.1 | Serratia ficaria |
| 73 | 3747664 | 3747945 | - | NZ_LR134494.1 | Serratia quinivorans |
| 74 | 2589320 | 2589601 | - | NZ_CP023567.1 | Erwinia pyrifoliae |
| 75 | 3333995 | 3334273 | - | NC_014500.1 | Dickeya dadantii 3937 |
| 76 | 1284635 | 1284916 | + | NC_010694.1 | Erwinia tasmaniensis Et1/99 |
| 77 | 1470199 | 1470486 | + | NZ_CP034036.1 | Brenneria nigrifluens DSM 30175 = ATCC 13028 |
| 78 | 3724209 | 3724490 | - | NZ_CP023009.1 | Lonsdalea britannica |
| 79 | 2633238 | 2633525 | - | NZ_CP034035.1 | Brenneria rubrifaciens |
| 80 | 520029 | 520307 | - | NZ_CP015137.1 | Dickeya solani IPO 2222 |
| 81 | 1429581 | 1429862 | + | NZ_CP071320.1 | Serratia ureilytica |
| 82 | 2985057 | 2985338 | - | NZ_CP016948.1 | Serratia surfactantfaciens |
| 83 | 2498986 | 2499267 | - | NC_013961.1 | Erwinia amylovora CFBP1430 |
| 84 | 4392354 | 4392632 | + | NZ_CP009460.1 | Dickeya fangzhongdai |
| 85 | 3142002 | 3142280 | - | NZ_CP025799.1 | Dickeya zeae |
| 86 | 3669413 | 3669694 | - | NZ_CP038662.1 | Serratia nematodiphila |
| 87 | 4365816 | 4366097 | + | NZ_CP014136.1 | Gibbsiella quercinecans |
| 88 | 3349120 | 3349398 | - | NZ_CP031560.1 | Dickeya dianthicola |
| 89 | 3799223 | 3799504 | - | NC_015567.1 | Serratia plymuthica AS9 |
| 90 | 3347044 | 3347328 | - | NZ_CP009125.1 | Pectobacterium atrosepticum |
| 91 | 3677239 | 3677520 | - | NZ_CP048784.1 | Serratia liquefaciens |
| 92 | 5874305 | 5874586 | - | NZ_CP011254.1 | Serratia fonticola |
| 93 | 3510310 | 3510591 | - | NC_014306.1 | Erwinia billingiae Eb661 |
| 94 | 3079967 | 3080242 | - | NZ_CP050150.1 | Hafnia alvei |
| 95 | 3192681 | 3192965 | - | NZ_CP038498.1 | Pectobacterium punjabense |
| 96 | 3211845 | 3212129 | + | NZ_CP047495.1 | Pectobacterium brasiliense |
| 97 | 1652831 | 1653115 | + | NZ_CP065044.1 | Pectobacterium aroidearum |
| 98 | 2534897 | 2535181 | - | NZ_CP015749.1 | Pectobacterium parmentieri |
| 99 | 222126 | 222410 | - | NZ_CP015750.1 | Pectobacterium wasabiae CFBP 3304 |
| 100 | 1276012 | 1276287 | + | NZ_CP042220.2 | Dickeya poaceiphila |
| 101 | 2537755 | 2538036 | - | NZ_CP065534.1 | Lonsdalea populi |
| 102 | 3036820 | 3037095 | - | NC_012880.1 | Musicola paradisiaca Ech703 |
| 103 | 109450 | 109728 | + | NZ_CP067057.1 | Rahnella aceris |
| 104 | 4967496 | 4967777 | - | NZ_CP065640.1 | Serratia rubidaea |
| 105 | 1536628 | 1536906 | + | NC_012912.1 | Dickeya chrysanthemi Ech1591 |
| 106 | 2124089 | 2124373 | - | NZ_CP017482.1 | Pectobacterium polaris |
| 107 | 1474303 | 1474578 | + | NZ_CP006569.1 | Sodalis praecaptivus |
| 108 | 1541152 | 1541436 | + | NZ_CP051652.1 | Pectobacterium carotovorum |
| 109 | 1261519 | 1261797 | + | NC_017910.1 | Shimwellia blattae DSM 4481 = NBRC 105725 |
| 110 | 3303129 | 3303413 | - | NZ_CP034938.1 | Pectobacterium odoriferum |
| 111 | 1316373 | 1316648 | + | NZ_LT615367.1 | Dickeya aquatica |
| 112 | 675728 | 676015 | + | NZ_CP014137.1 | Brenneria goodwinii |
| 113 | 1032436 | 1032717 | + | NZ_CP032487.1 | Yersinia hibernica |
| 114 | 1554442 | 1554720 | + | NZ_LR134373.1 | Yersinia pseudotuberculosis |
| 115 | 3749895 | 3750173 | - | NC_005126.1 | Photorhabdus laumondii subsp. laumondii TTO1 |
| 116 | 2752470 | 2752751 | + | NZ_CP007044.2 | Chania multitudinisentens RB-25 |
| 117 | 2765462 | 2765749 | + | NZ_CP054043.1 | Yersinia mollaretii ATCC 43969 |
| 118 | 3146475 | 3146750 | - | NZ_CP046293.1 | Yersinia intermedia |
| 119 | 173762 | 174040 | - | NZ_CP011104.1 | Photorhabdus thracensis |
| 120 | 1081042 | 1081323 | - | NZ_CP011078.1 | Yersinia ruckeri |
| 121 | 3298753 | 3299025 | - | NZ_CP029736.1 | Providencia rettgeri |
| 122 | 1541753 | 1542034 | + | NZ_CP043727.1 | Yersinia canariae |
| 123 | 1491008 | 1491313 | + | NZ_CP011118.1 | Yersinia enterocolitica |
| 124 | 4716343 | 4716621 | - | NZ_CP007230.1 | Yersinia similis |
| 125 | 1324647 | 1324934 | - | NZ_CP009781.1 | Yersinia aldovae 670-83 |
| 126 | 1624448 | 1624726 | + | NC_012962.1 | Photorhabdus asymbiotica |
| 127 | 1724772 | 1725044 | + | NZ_LS483422.1 | Providencia heimbachae |
| 128 | 2939607 | 2939900 | - | NC_013892.1 | Xenorhabdus bovienii SS-2004 |
| 129 | 2125886 | 2126158 | - | NZ_CP031123.2 | Providencia huaxiensis |
| 130 | 1782553 | 1782825 | + | NZ_CP048796.1 | Providencia vermicola |
| 131 | 1132175 | 1132447 | + | NZ_CP016043.1 | Edwardsiella hoshinae |
| 132 | 2808136 | 2808408 | + | NZ_CP023706.1 | Edwardsiella tarda |
| 133 | 257292 | 257567 | + | NZ_CP016176.1 | Xenorhabdus hominickii |
| 134 | 1566592 | 1566879 | + | NZ_CP072455.1 | Xenorhabdus budapestensis |
| 135 | 1153927 | 1154202 | + | NZ_FO704551.1 | Xenorhabdus poinarii G6 |
| 136 | 2804648 | 2804923 | + | NZ_FO704550.1 | Xenorhabdus doucetiae |
| 137 | 1401243 | 1401530 | - | NZ_CP009787.1 | Yersinia rohdei |
| 138 | 2492408 | 2492680 | + | NZ_CP023536.1 | Providencia alcalifaciens |
| 139 | 883507 | 883782 | - | NZ_CP060401.1 | Xenorhabdus nematophila |
| 140 | 430249 | 430530 | - | NZ_CP006664.1 | Edwardsiella anguillarum ET080813 |
| 141 | 2622304 | 2622585 | - | NC_012779.2 | Edwardsiella ictaluri 93-146 |
| 142 | 2600285 | 2600557 | - | NZ_CP034752.1 | Jinshanibacter zhutongyuii |
| 143 | 2922581 | 2922820 | - | NZ_CP015581.1 | Tatumella citrea |
| 144 | 2435718 | 2435990 | - | NZ_CP029185.2 | Limnobaculum parvum |
| 145 | 170384 | 170656 | - | NZ_CP026364.1 | Proteus hauseri |
| 146 | 1241935 | 1242219 | + | NZ_LR134531.1 | Pragia fontium |
| 147 | 2508468 | 2508740 | - | NZ_CP047349.1 | Proteus terrae subsp. cibarius |
| 148 | 1929978 | 1930250 | - | NC_010554.1 | Proteus mirabilis HI4320 |
| 149 | 1180392 | 1180664 | + | NZ_LS483470.1 | Leminorella richardii |
| 150 | 2512842 | 2513111 | - | NZ_CP071325.1 | Photobacterium ganghwense |
| 151 | 2796995 | 2797225 | - | NZ_AP022188.1 | Aeromonas media |
| 152 | 360317 | 360583 | - | NZ_CP014056.2 | Grimontia hollisae |
| 153 | 2066020 | 2066247 | + | NZ_CP050851.1 | Aeromonas hydrophila |
| 154 | 1594778 | 1595005 | - | NZ_CP051883.1 | Aeromonas salmonicida |
| 155 | 1897039 | 1897269 | + | NZ_LR134376.1 | Aeromonas encheleia |
| 156 | 825080 | 825310 | + | NZ_CP065745.1 | Aeromonas allosaccharophila |
| 157 | 1953309 | 1953587 | - | NZ_CP040449.1 | Aeromonas simiae |
| 158 | 2045242 | 2045469 | - | NZ_CP040021.1 | Salinivibrio kushneri |
| 159 | 1244731 | 1244961 | - | NZ_CP044060.1 | Aeromonas veronii |
| 160 | 1599661 | 1599906 | + | NZ_CP012621.1 | Zobellella denitrificans |
++ More..
| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_CP061527.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF13649.8 | 0.91 | 144 | 3372 | same-strand | Methyltransferase domain |
| 2 | PF01264.23 | 0.92 | 146 | 2220 | same-strand | Chorismate synthase |
| 3 | PF03411.15 | 0.79 | 126 | 1402 | same-strand | Penicillin-insensitive murein endopeptidase |
| 4 | PF01925.21 | 0.93 | 148 | 596 | same-strand | Sulfite exporter TauE/SafE |
| 5 | PF04315.14 | 0.96 | 152 | 32 | same-strand | Elongation factor P hydroxylase |
| 6 | PF05430.13 | 0.88 | 140 | 98 | opposite-strand | S-adenosyl-L-methionine-dependent methyltransferase |
| 7 | PF01266.26 | 0.89 | 142 | 98 | opposite-strand | FAD dependent oxidoreductase |
| 8 | PF00109.28 | 0.86 | 137 | 2267.0 | same-strand | Beta-ketoacyl synthase, N-terminal domain |
| 9 | PF02801.24 | 0.86 | 137 | 2267.0 | same-strand | Beta-ketoacyl synthase, C-terminal domain |
++ More..