Result : P64479
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | Uncharacterized protein YdiZ |
| NCBI Accession ID | U00096.3 |
| Organism | Escherichia coli (strain K12) |
| Left | 1807400 |
| Right | 1807690 |
| Strand | + |
| Nucleotide Sequence | ATGGCCAGTGGCGATCTTGTCCGTTATGTCATAACCGTCATGTTGCATGAGGATACATTGACTGAAATTAACGAGTTGAATAATTACCTGACTCGCGACGGTTTTTTGCTCACTATGACGGATGATGAGGGAAATATCCATGAGCTGGGAACTAACACTTTTGGACTTATCAGTACCCAAAGTGAAGAAGAAATTAGAGAACTGGTTTCGGGGCTTACCCAAAGTGCAACCGGCAAAGATCCTGAAATCACCATCACGACCTGGGAGGAATGGAATAGCAACAGAAAATAA |
| Sequence | MASGDLVRYVITVMLHEDTLTEINELNNYLTRDGFLLTMTDDEGNIHELGTNTFGLISTQSEEEIRELVSGLTQSATGKDPEITITTWEEWNSNRK |
| Source of smORF | Swiss-Prot |
| Function | The ORF matches to the profile of pfam11080. Profile Description: Endoribonuclease GhoS. GhoS is part of the GhoT-GhoS type V toxin-antitoxin (TA) system. GhoT is inhibited by antitoxin GhoS, which specifically cleaves its mRNA. |
| Pubmed ID | 9278503 16738553 |
| Domain | CDD:402595 |
| Functional Category | Others |
| Uniprot ID | P64479 |
| ORF Length (Amino Acid) | 96 |
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| Conservation Analysis |
No. of Species: 53
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 1949963 | 1950253 | - | NZ_CP061527.1 | Shigella dysenteriae |
| 2 | 1807400 | 1807690 | + | NC_000913.3 | Escherichia coli str. K-12 substr. MG1655 |
| 3 | 2407251 | 2407541 | + | NC_002695.2 | Escherichia coli O157:H7 str. Sakai |
| 4 | 1539110 | 1539400 | - | NC_004337.2 | Shigella flexneri 2a str. 301 |
| 5 | 2024134 | 2024424 | - | NZ_LR134340.1 | Escherichia marmotae |
| 6 | 1740161 | 1740451 | + | NZ_AP014857.1 | Escherichia albertii |
| 7 | 330357 | 330647 | - | NZ_CP057657.1 | Escherichia fergusonii |
| 8 | 1404694 | 1404984 | - | NC_003197.2 | Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 |
| 9 | 1671884 | 1672171 | + | NC_009792.1 | Citrobacter koseri ATCC BAA-895 |
| 10 | 3566585 | 3566875 | - | NZ_LT556085.1 | Citrobacter amalonaticus |
| 11 | 1428525 | 1428815 | - | NC_013716.1 | Citrobacter rodentium ICC168 |
| 12 | 3434210 | 3434500 | + | NZ_CP045205.1 | Citrobacter telavivensis |
| 13 | 3819095 | 3819385 | - | NZ_CP053416.1 | Salmonella bongori |
| 14 | 2796787 | 2797077 | + | NZ_CP013990.1 | Leclercia adecarboxylata |
| 15 | 780898 | 781188 | - | NZ_CP023529.1 | Lelliottia amnigena |
| 16 | 3645838 | 3646128 | - | NZ_CP042941.1 | Atlantibacter hermannii |
| 17 | 1950521 | 1950796 | - | NZ_CP054058.1 | Scandinavium goeteborgense |
| 18 | 2180810 | 2181106 | + | NZ_CP012268.1 | Cronobacter muytjensii ATCC 51329 |
| 19 | 1417925 | 1418215 | - | NZ_CP011602.1 | Phytobacter ursingii |
| 20 | 1855003 | 1855299 | - | NZ_CP012266.1 | Cronobacter dublinensis subsp. dublinensis LMG 23823 |
| 21 | 2637800 | 2638090 | + | NZ_AP023184.1 | Buttiauxella agrestis |
| 22 | 2677765 | 2678055 | - | NZ_CP051548.1 | Phytobacter diazotrophicus |
| 23 | 2048706 | 2048996 | - | NZ_CP015113.1 | Kosakonia radicincitans |
| 24 | 2655563 | 2655853 | + | NZ_CP035129.1 | Kosakonia cowanii |
| 25 | 1886385 | 1886675 | - | NZ_AP022508.1 | Enterobacter bugandensis |
| 26 | 1914240 | 1914530 | - | NZ_CP009756.1 | Enterobacter cloacae |
| 27 | 2342780 | 2343040 | + | NZ_CP013940.1 | Cronobacter malonaticus LMG 23826 |
| 28 | 1123972 | 1124262 | - | NZ_CP017279.1 | Enterobacter ludwigii |
| 29 | 1826225 | 1826521 | - | NZ_CP012264.1 | Cronobacter condimenti 1330 |
| 30 | 1919676 | 1919966 | - | NZ_CP027986.1 | Enterobacter sichuanensis |
| 31 | 1558215 | 1558475 | + | NZ_CP027107.1 | Cronobacter sakazakii |
| 32 | 1585996 | 1586286 | + | NZ_CP045769.1 | Enterobacter cancerogenus |
| 33 | 1854876 | 1855166 | - | NZ_CP017184.1 | Enterobacter roggenkampii |
| 34 | 2093585 | 2093875 | - | NZ_CP063425.1 | Kosakonia pseudosacchari |
| 35 | 2136027 | 2136317 | - | NZ_CP043318.1 | Enterobacter chengduensis |
| 36 | 639219 | 639509 | + | NZ_CP025034.2 | Enterobacter sp. SGAir0187 |
| 37 | 1031861 | 1032151 | + | NZ_CP016337.1 | Kosakonia sacchari |
| 38 | 4382135 | 4382425 | - | NZ_AP019007.1 | Enterobacter oligotrophicus |
| 39 | 1823027 | 1823308 | - | NZ_CP012257.1 | Cronobacter universalis NCTC 9529 |
| 40 | 3919465 | 3919746 | + | NZ_CP020388.1 | Pluralibacter gergoviae |
| 41 | 2272830 | 2273087 | - | NZ_CP050508.1 | Raoultella terrigena |
| 42 | 2432969 | 2433253 | - | NZ_CP060111.1 | Klebsiella michiganensis |
| 43 | 3054944 | 3055204 | + | NZ_LR134475.1 | Klebsiella aerogenes |
| 44 | 2123120 | 2123404 | - | NZ_CP054254.1 | Klebsiella variicola |
| 45 | 2071269 | 2071502 | - | NZ_CP065838.1 | Klebsiella quasipneumoniae |
| 46 | 3135662 | 3135952 | + | NZ_CP014007.2 | Kosakonia oryzae |
| 47 | 3165901 | 3166152 | + | NC_016845.1 | Klebsiella pneumoniae subsp. pneumoniae HS11286 |
| 48 | 2936327 | 2936578 | + | NZ_CP023525.1 | Cedecea neteri |
| 49 | 5004424 | 5004708 | + | NZ_CP026047.1 | Raoultella planticola |
| 50 | 2265102 | 2265386 | - | NZ_CP046672.1 | Raoultella ornithinolytica |
| 51 | 2698924 | 2699178 | + | NZ_LR134201.1 | Cedecea lapagei |
| 52 | 2485144 | 2485428 | - | NZ_CP036175.1 | Klebsiella huaxiensis |
| 53 | 2184908 | 2185192 | - | NZ_CP041247.1 | Raoultella electrica |
| 54 | 984746 | 985036 | + | NZ_CP045300.1 | Kosakonia arachidis |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_002695.2
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF04307.16 | 0.72 | 38 | 3346 | same-strand | LexA-binding, inner membrane-associated putative hydrolase |
| 2 | PF13419.8 | 0.77 | 41 | 1690.0 | same-strand | Haloacid dehalogenase-like hydrolase |
| 3 | PF14002.8 | 0.77 | 41 | 1005.0 | opposite-strand | YniB-like protein |
| 4 | PF03881.16 | 1.0 | 53 | 106.0 | same-strand | Fructosamine kinase |
| 5 | PF01636.25 | 1.0 | 53 | 106.0 | same-strand | Phosphotransferase enzyme family |
| 6 | PF00294.26 | 0.98 | 52 | 101 | same-strand | pfkB family carbohydrate kinase |
| 7 | PF00587.27 | 0.66 | 35 | 3046 | opposite-strand | tRNA synthetase class II core domain (G, H, P, S and T) |
| 8 | PF03129.22 | 0.66 | 35 | 3046 | opposite-strand | Anticodon binding domain |
| 9 | PF07973.16 | 0.66 | 35 | 3046 | opposite-strand | Threonyl and Alanyl tRNA synthetase second additional domain |
| 10 | PF02824.23 | 0.66 | 35 | 3046 | opposite-strand | TGS domain |
| 11 | PF04338.14 | 0.98 | 52 | 1317 | opposite-strand | Protein of unknown function, DUF481 |
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