Result : P64475
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | Uncharacterized protein YdhL |
| NCBI Accession ID | |
| Organism | Shigella flexneri |
| Left | |
| Right | |
| Strand | |
| Nucleotide Sequence | |
| Sequence | MAEQLEFFPVQSPCRGICQSDERGFCRGCFRSRDERFNWNKMSDGEKQEVLRLCRQRLMRKLRANKPASSDEPEQPSLF |
| Source of smORF | Swiss-Prot |
| Function | The ORF matches to the profile of cl01304. Profile Description: Protein of unknown function (DUF1289). This family consists of a number of hypothetical bacterial proteins. The aligned region spans around 56 residues and contains 4 highly conserved cysteine residues towards the N-terminus. The function of this family is unknown. Structural modelling suggests this domain may bind nucleic acids. |
| Pubmed ID | 12384590 12704152 |
| Domain | CDD:412835 |
| Functional Category | Others |
| Uniprot ID | P64475 |
| ORF Length (Amino Acid) | 79 |
++ More..
| Conservation Analysis |
No. of Species: 175
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 1703783 | 1704022 | - | NC_004337.2 | Shigella flexneri 2a str. 301 |
| 2 | 1725681 | 1725920 | - | NC_000913.3 | Escherichia coli str. K-12 substr. MG1655 |
| 3 | 1897585 | 1897824 | + | NZ_CP061527.1 | Shigella dysenteriae |
| 4 | 2325544 | 2325783 | - | NC_002695.2 | Escherichia coli O157:H7 str. Sakai |
| 5 | 424860 | 425099 | + | NZ_CP057657.1 | Escherichia fergusonii |
| 6 | 2083137 | 2083376 | + | NZ_LR134340.1 | Escherichia marmotae |
| 7 | 1663091 | 1663330 | - | NZ_AP014857.1 | Escherichia albertii |
| 8 | 815197 | 815436 | + | NZ_CP038469.1 | Citrobacter tructae |
| 9 | 4951282 | 4951521 | + | NZ_CP033744.1 | Citrobacter freundii |
| 10 | 108154 | 108393 | - | NZ_CP044098.1 | Citrobacter portucalensis |
| 11 | 878860 | 879099 | + | NZ_CP023529.1 | Lelliottia amnigena |
| 12 | 1597880 | 1598119 | - | NC_009792.1 | Citrobacter koseri ATCC BAA-895 |
| 13 | 2086827 | 2087066 | + | NZ_AP023184.1 | Buttiauxella agrestis |
| 14 | 2163765 | 2164004 | + | NZ_CP063425.1 | Kosakonia pseudosacchari |
| 15 | 961989 | 962228 | - | NZ_CP016337.1 | Kosakonia sacchari |
| 16 | 1514775 | 1515014 | + | NC_003197.2 | Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 |
| 17 | 3903993 | 3904232 | + | NZ_CP053416.1 | Salmonella bongori |
| 18 | 2696079 | 2696318 | + | NZ_CP036175.1 | Klebsiella huaxiensis |
| 19 | 2010518 | 2010757 | + | NZ_CP009756.1 | Enterobacter cloacae |
| 20 | 2122457 | 2122696 | + | NZ_CP015113.1 | Kosakonia radicincitans |
| 21 | 2740933 | 2741172 | + | NZ_CP051548.1 | Phytobacter diazotrophicus |
| 22 | 1427544 | 1427783 | - | NZ_CP027107.1 | Cronobacter sakazakii |
| 23 | 3012331 | 3012570 | - | NZ_CP014007.2 | Kosakonia oryzae |
| 24 | 2052824 | 2053063 | - | NZ_CP012268.1 | Cronobacter muytjensii ATCC 51329 |
| 25 | 913195 | 913434 | - | NZ_CP045300.1 | Kosakonia arachidis |
| 26 | 1954463 | 1954702 | + | NZ_CP012264.1 | Cronobacter condimenti 1330 |
| 27 | 2207791 | 2208030 | - | NZ_CP013940.1 | Cronobacter malonaticus LMG 23826 |
| 28 | 1961015 | 1961254 | + | NZ_CP012257.1 | Cronobacter universalis NCTC 9529 |
| 29 | 2009333 | 2009572 | + | NZ_CP012266.1 | Cronobacter dublinensis subsp. dublinensis LMG 23823 |
| 30 | 2586980 | 2587219 | - | NZ_CP035129.1 | Kosakonia cowanii |
| 31 | 2341950 | 2342189 | - | NC_017910.1 | Shimwellia blattae DSM 4481 = NBRC 105725 |
| 32 | 3700711 | 3700950 | + | NZ_CP042941.1 | Atlantibacter hermannii |
| 33 | 3573017 | 3573256 | + | NZ_CP040428.1 | Jejubacter calystegiae |
| 34 | 3808421 | 3808660 | - | NZ_CP019706.1 | Pantoea alhagi |
| 35 | 1961733 | 1961972 | + | NZ_LR134373.1 | Yersinia pseudotuberculosis |
| 36 | 2796267 | 2796506 | - | NZ_CP025799.1 | Dickeya zeae |
| 37 | 1970745 | 1970984 | + | NC_012912.1 | Dickeya chrysanthemi Ech1591 |
| 38 | 4283721 | 4283960 | - | NZ_CP007230.1 | Yersinia similis |
| 39 | 3044028 | 3044267 | - | NC_005126.1 | Photorhabdus laumondii subsp. laumondii TTO1 |
| 40 | 1257180 | 1257422 | + | NZ_CP028271.1 | Mixta intestinalis |
| 41 | 1479368 | 1479607 | + | NZ_CP011602.1 | Phytobacter ursingii |
| 42 | 2176068 | 2176307 | + | NC_014306.1 | Erwinia billingiae Eb661 |
| 43 | 2115975 | 2116214 | + | NZ_CP026377.1 | Mixta gaviniae |
| 44 | 1519771 | 1520010 | + | NC_013716.1 | Citrobacter rodentium ICC168 |
| 45 | 1829590 | 1829829 | + | NZ_LN907827.1 | Erwinia gerundensis |
| 46 | 2867639 | 2867878 | - | NC_014500.1 | Dickeya dadantii 3937 |
| 47 | 2278428 | 2278667 | + | NZ_CP065838.1 | Klebsiella quasipneumoniae |
| 48 | 2360761 | 2361000 | + | NZ_CP054254.1 | Klebsiella variicola |
| 49 | 2064463 | 2064702 | + | NZ_CP061511.1 | Mixta calida |
| 50 | 4252907 | 4253146 | + | NZ_CP011104.1 | Photorhabdus thracensis |
| 51 | 4926305 | 4926544 | + | NZ_CP009460.1 | Dickeya fangzhongdai |
| 52 | 2812318 | 2812557 | - | NZ_CP031560.1 | Dickeya dianthicola |
| 53 | 2962675 | 2962914 | - | NC_016845.1 | Klebsiella pneumoniae subsp. pneumoniae HS11286 |
| 54 | 2810652 | 2810891 | + | NZ_CP023009.1 | Lonsdalea britannica |
| 55 | 121112 | 121351 | - | NZ_CP015137.1 | Dickeya solani IPO 2222 |
| 56 | 3661335 | 3661574 | + | NZ_LT556085.1 | Citrobacter amalonaticus |
| 57 | 1769007 | 1769246 | + | NZ_CP042220.2 | Dickeya poaceiphila |
| 58 | 2450014 | 2450253 | - | NZ_CP012871.1 | [Enterobacter] lignolyticus |
| 59 | 2734657 | 2734896 | - | NZ_LT615367.1 | Dickeya aquatica |
| 60 | 2864928 | 2865167 | - | NZ_LR134475.1 | Klebsiella aerogenes |
| 61 | 2171433 | 2171672 | + | NC_012962.1 | Photorhabdus asymbiotica |
| 62 | 2040661 | 2040900 | - | NC_010694.1 | Erwinia tasmaniensis Et1/99 |
| 63 | 3327394 | 3327633 | - | NZ_CP045205.1 | Citrobacter telavivensis |
| 64 | 2018572 | 2018811 | + | NZ_CP027986.1 | Enterobacter sichuanensis |
| 65 | 3833757 | 3833996 | - | NZ_CP020388.1 | Pluralibacter gergoviae |
| 66 | 33545 | 33784 | + | NZ_AP019007.1 | Enterobacter oligotrophicus |
| 67 | 1222140 | 1222379 | + | NZ_CP017279.1 | Enterobacter ludwigii |
| 68 | 2761350 | 2761589 | - | NZ_CP071320.1 | Serratia ureilytica |
| 69 | 1649131 | 1649370 | + | NZ_CP016948.1 | Serratia surfactantfaciens |
| 70 | 2346636 | 2346875 | + | NZ_CP038662.1 | Serratia nematodiphila |
| 71 | 5247624 | 5247863 | + | NZ_CP014136.1 | Gibbsiella quercinecans |
| 72 | 535497 | 535736 | - | NZ_CP025034.2 | Enterobacter sp. SGAir0187 |
| 73 | 1993102 | 1993341 | + | NZ_AP022508.1 | Enterobacter bugandensis |
| 74 | 1937297 | 1937536 | + | NZ_CP017184.1 | Enterobacter roggenkampii |
| 75 | 2030633 | 2030872 | + | NZ_CP054058.1 | Scandinavium goeteborgense |
| 76 | 1646461 | 1646700 | + | NZ_CP065534.1 | Lonsdalea populi |
| 77 | 2338888 | 2339127 | + | NZ_CP041247.1 | Raoultella electrica |
| 78 | 4794441 | 4794680 | - | NZ_CP026047.1 | Raoultella planticola |
| 79 | 2009411 | 2009650 | + | NC_012880.1 | Musicola paradisiaca Ech703 |
| 80 | 1468665 | 1468904 | + | NZ_CP014137.1 | Brenneria goodwinii |
| 81 | 2475072 | 2475311 | + | NZ_CP046672.1 | Raoultella ornithinolytica |
| 82 | 1843136 | 1843375 | + | NZ_CP015581.1 | Tatumella citrea |
| 83 | 2632453 | 2632692 | - | NZ_LR134201.1 | Cedecea lapagei |
| 84 | 2863655 | 2863894 | - | NZ_CP023525.1 | Cedecea neteri |
| 85 | 2308428 | 2308667 | + | NC_015567.1 | Serratia plymuthica AS9 |
| 86 | 1444878 | 1445117 | - | NZ_CP045769.1 | Enterobacter cancerogenus |
| 87 | 2459776 | 2460015 | - | NZ_CP045845.1 | Kluyvera intermedia |
| 88 | 4561946 | 4562185 | + | NZ_CP011254.1 | Serratia fonticola |
| 89 | 2401624 | 2401863 | + | NZ_LR134494.1 | Serratia quinivorans |
| 90 | 1964148 | 1964387 | + | NC_015968.1 | Enterobacter soli |
| 91 | 2148264 | 2148503 | + | NZ_CP034938.1 | Pectobacterium odoriferum |
| 92 | 1754558 | 1754797 | - | NZ_CP067057.1 | Rahnella aceris |
| 93 | 2341839 | 2342078 | + | NZ_CP048784.1 | Serratia liquefaciens |
| 94 | 2622013 | 2622252 | + | NZ_CP060111.1 | Klebsiella michiganensis |
| 95 | 3779100 | 3779339 | - | NZ_CP007044.2 | Chania multitudinisentens RB-25 |
| 96 | 2920570 | 2920809 | - | NZ_CP009125.1 | Pectobacterium atrosepticum |
| 97 | 1204462 | 1204701 | + | NZ_CP015749.1 | Pectobacterium parmentieri |
| 98 | 2456818 | 2457057 | - | NZ_CP034036.1 | Brenneria nigrifluens DSM 30175 = ATCC 13028 |
| 99 | 2574022 | 2574261 | - | NC_017554.1 | Pantoea ananatis PA13 |
| 100 | 4351821 | 4352060 | - | NZ_CP047495.1 | Pectobacterium brasiliense |
| 101 | 1582111 | 1582350 | - | NZ_CP017482.1 | Pectobacterium polaris |
| 102 | 2031833 | 2032072 | + | NZ_CP051652.1 | Pectobacterium carotovorum |
| 103 | 2358174 | 2358413 | - | NZ_CP050150.1 | Hafnia alvei |
| 104 | 2711315 | 2711554 | - | NZ_CP013990.1 | Leclercia adecarboxylata |
| 105 | 4559650 | 4559889 | - | NZ_CP015750.1 | Pectobacterium wasabiae CFBP 3304 |
| 106 | 2859947 | 2860186 | - | NZ_CP065044.1 | Pectobacterium aroidearum |
| 107 | 2227044 | 2227283 | + | NZ_CP043318.1 | Enterobacter chengduensis |
| 108 | 1695241 | 1695480 | + | NZ_CP034035.1 | Brenneria rubrifaciens |
| 109 | 1859153 | 1859392 | + | NZ_CP023567.1 | Erwinia pyrifoliae |
| 110 | 2724043 | 2724282 | - | NZ_CP038498.1 | Pectobacterium punjabense |
| 111 | 2537571 | 2537810 | + | NZ_CP050508.1 | Raoultella terrigena |
| 112 | 2336773 | 2337021 | - | NZ_CP006569.1 | Sodalis praecaptivus |
| 113 | 1903267 | 1903506 | - | NZ_CP060401.1 | Xenorhabdus nematophila |
| 114 | 1395658 | 1395897 | - | NZ_CP016176.1 | Xenorhabdus hominickii |
| 115 | 1151576 | 1151815 | + | NZ_CP031123.2 | Providencia huaxiensis |
| 116 | 1934811 | 1935050 | - | NZ_CP034752.1 | Jinshanibacter zhutongyuii |
| 117 | 1886221 | 1886460 | - | NZ_CP029185.2 | Limnobaculum parvum |
| 118 | 2546296 | 2546535 | - | NZ_LS483422.1 | Providencia heimbachae |
| 119 | 2544281 | 2544520 | + | NZ_CP029736.1 | Providencia rettgeri |
| 120 | 2015832 | 2016071 | + | NZ_CP072455.1 | Xenorhabdus budapestensis |
| 121 | 2618006 | 2618245 | - | NZ_CP048796.1 | Providencia vermicola |
| 122 | 310776 | 311015 | + | NZ_CP009781.1 | Yersinia aldovae 670-83 |
| 123 | 1929950 | 1930189 | + | NZ_LR134531.1 | Pragia fontium |
| 124 | 1610665 | 1610868 | - | NZ_CP040449.1 | Aeromonas simiae |
| 125 | 1880930 | 1881169 | + | NZ_FO704550.1 | Xenorhabdus doucetiae |
| 126 | 3358812 | 3359051 | - | NZ_CP023536.1 | Providencia alcalifaciens |
| 127 | 1706280 | 1706519 | + | NZ_CP032487.1 | Yersinia hibernica |
| 128 | 2199685 | 2199924 | + | NZ_CP043727.1 | Yersinia canariae |
| 129 | 2020339 | 2020578 | - | NZ_LS483470.1 | Leminorella richardii |
| 130 | 2458007 | 2458246 | - | NZ_CP011118.1 | Yersinia enterocolitica |
| 131 | 3630943 | 3631182 | - | NZ_CP054043.1 | Yersinia mollaretii ATCC 43969 |
| 132 | 2315368 | 2315619 | - | NZ_CP050851.1 | Aeromonas hydrophila |
| 133 | 1457186 | 1457470 | - | NZ_CP040021.1 | Salinivibrio kushneri |
| 134 | 3751567 | 3751806 | + | NZ_CP065640.1 | Serratia rubidaea |
| 135 | 2405123 | 2405362 | - | NZ_CP046293.1 | Yersinia intermedia |
| 136 | 1542290 | 1542514 | + | NZ_FO704551.1 | Xenorhabdus poinarii G6 |
| 137 | 1216412 | 1216654 | - | NZ_CP072133.1 | Pseudoalteromonas xiamenensis |
| 138 | 770280 | 770519 | - | NZ_CP009787.1 | Yersinia rohdei |
| 139 | 2496107 | 2496358 | + | NZ_AP022188.1 | Aeromonas media |
| 140 | 505250 | 505489 | - | NZ_CP011078.1 | Yersinia ruckeri |
| 141 | 2256253 | 2256492 | - | NZ_CP045720.1 | Pantoea eucalypti |
| 142 | 1330892 | 1331140 | + | NZ_CP009354.1 | Vibrio tubiashii ATCC 19109 |
| 143 | 2819665 | 2819907 | + | NZ_CP014056.2 | Grimontia hollisae |
| 144 | 914904 | 915131 | + | NZ_AP019657.1 | Vibrio ponticus |
| 145 | 1804488 | 1804727 | + | NZ_CP034148.1 | Pantoea agglomerans |
| 146 | 1574586 | 1574834 | + | NZ_CP059567.1 | Neisseria shayeganii |
| 147 | 1982666 | 1982920 | - | NZ_CP071325.1 | Photobacterium ganghwense |
| 148 | 980448 | 980705 | + | NZ_CP016414.1 | Vibrio scophthalmi |
| 149 | 1764294 | 1764530 | + | NC_013961.1 | Erwinia amylovora CFBP1430 |
| 150 | 583927 | 584172 | + | NZ_CP033065.1 | Pseudoalteromonas agarivorans |
| 151 | 612946 | 613191 | + | NZ_CP023464.1 | Pseudoalteromonas atlantica |
| 152 | 1643944 | 1644183 | - | NZ_CP009977.1 | Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759 |
| 153 | 1469294 | 1469533 | - | NC_010554.1 | Proteus mirabilis HI4320 |
| 154 | 1661719 | 1661958 | + | NZ_CP047349.1 | Proteus terrae subsp. cibarius |
| 155 | 813166 | 813414 | - | NZ_CP025792.1 | Vibrio jasicida 090810c |
| 156 | 2374096 | 2374371 | + | NC_012691.1 | Tolumonas auensis DSM 9187 |
| 157 | 1020996 | 1021244 | + | NZ_CP014035.2 | Vibrio fluvialis |
| 158 | 1100299 | 1100562 | + | NZ_CP007446.1 | Snodgrassella alvi wkB2 |
| 159 | 1856657 | 1856908 | + | NZ_LT906482.1 | Eikenella corrodens |
| 160 | 853360 | 853611 | - | NZ_CP044060.1 | Aeromonas veronii |
| 161 | 1015644 | 1015856 | + | NZ_CP021376.1 | Oceanisphaera avium |
| 162 | 188262 | 188501 | + | NZ_CP049115.1 | Pantoea stewartii |
| 163 | 1467847 | 1468056 | + | NZ_CP044069.1 | Vibrio vulnificus |
| 164 | 1996148 | 1996396 | - | NZ_CP031781.1 | Vibrio parahaemolyticus |
| 165 | 2392535 | 2392774 | + | NZ_LT906479.1 | Serratia ficaria |
| 166 | 3215632 | 3215901 | - | NZ_CP037951.1 | Parashewanella tropica |
| 167 | 1597147 | 1597395 | - | NZ_CP047165.1 | Pelistega ratti |
| 168 | 199639 | 199836 | + | NZ_CP031961.1 | Pseudoalteromonas tunicata |
| 169 | 2342412 | 2342660 | - | NZ_CP040990.1 | Vibrio furnissii |
| 170 | 1270077 | 1270316 | + | NZ_CP030788.1 | Vibrio campbellii |
| 171 | 1253019 | 1253267 | + | NZ_CP032093.1 | Vibrio alfacsensis |
| 172 | 1051850 | 1052101 | - | NZ_CP065745.1 | Aeromonas allosaccharophila |
| 173 | 1609333 | 1609605 | - | NC_016043.1 | Taylorella asinigenitalis MCE3 |
| 174 | 4289238 | 4289492 | - | NZ_CP037952.1 | Parashewanella spongiae |
| 175 | 1737720 | 1737926 | + | NZ_CP046268.1 | Vibrio spartinae |
| 176 | 1341519 | 1341722 | + | NZ_CP045350.1 | Vibrio aquimaris |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_004337.2
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF00903.27 | 0.73 | 127 | 1959.5 | opposite-strand | Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily |
| 2 | PF13669.8 | 0.73 | 127 | 1959.5 | opposite-strand | Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily |
| 3 | PF18029.3 | 0.73 | 127 | 1959.5 | opposite-strand | Glyoxalase-like domain |
| 4 | PF00929.26 | 0.69 | 120 | 2459 | opposite-strand | Exonuclease |
++ More..