Result : P64473
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | Uncharacterized protein YdhI |
| NCBI Accession ID | AE005674.2 |
| Organism | Shigella flexneri |
| Left | 1699127 |
| Right | 1699363 |
| Strand | + |
| Nucleotide Sequence | GTGAAGTTTATGCTCAATGCAACAGGATTGCCCTTACAAGATCTGGTGTTCGGTGCGTCCGTCTATTTTCCTCCGTTTTTCAAAGCATTCGCGTTTGGATTCGTCATCTGGCTTGTCGTACACCGACTGCTTCGTGGCTGGATCTACGCCGGCGATATCTGGCATCCCTTGTTAATGGATTTATCGCTGTTTGCGATTTGCGTTTGCCTTGCTCTGGCAATACTGATTGCGTGGTAA |
| Sequence | MKFMLNATGLPLQDLVFGASVYFPPFFKAFAFGFVIWLVVHRLLRGWIYAGDIWHPLLMDLSLFAICVCLALAILIAW |
| Source of smORF | Swiss-Prot |
| Function | |
| Pubmed ID | 12384590 12704152 |
| Domain | |
| Functional Category | Others |
| Uniprot ID | P64473 |
| ORF Length (Amino Acid) | 78 |
++ More..
| Conservation Analysis |
No. of Species: 89
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 1699127 | 1699363 | + | NC_004337.2 | Shigella flexneri 2a str. 301 |
| 2 | 1721025 | 1721261 | + | NC_000913.3 | Escherichia coli str. K-12 substr. MG1655 |
| 3 | 2320888 | 2321124 | + | NC_002695.2 | Escherichia coli O157:H7 str. Sakai |
| 4 | 1902258 | 1902494 | - | NZ_CP061527.1 | Shigella dysenteriae |
| 5 | 1658887 | 1659123 | + | NZ_AP014857.1 | Escherichia albertii |
| 6 | 2087791 | 2088027 | - | NZ_LR134340.1 | Escherichia marmotae |
| 7 | 429517 | 429753 | - | NZ_CP057657.1 | Escherichia fergusonii |
| 8 | 103487 | 103723 | + | NZ_CP044098.1 | Citrobacter portucalensis |
| 9 | 4955952 | 4956188 | - | NZ_CP033744.1 | Citrobacter freundii |
| 10 | 1593218 | 1593454 | + | NC_009792.1 | Citrobacter koseri ATCC BAA-895 |
| 11 | 819863 | 820099 | - | NZ_CP038469.1 | Citrobacter tructae |
| 12 | 2706675 | 2706911 | + | NZ_CP013990.1 | Leclercia adecarboxylata |
| 13 | 2283127 | 2283363 | - | NZ_CP065838.1 | Klebsiella quasipneumoniae |
| 14 | 2957980 | 2958216 | + | NC_016845.1 | Klebsiella pneumoniae subsp. pneumoniae HS11286 |
| 15 | 2365460 | 2365696 | - | NZ_CP054254.1 | Klebsiella variicola |
| 16 | 2035383 | 2035619 | - | NZ_CP054058.1 | Scandinavium goeteborgense |
| 17 | 38204 | 38440 | - | NZ_AP019007.1 | Enterobacter oligotrophicus |
| 18 | 4790188 | 4790424 | + | NZ_CP026047.1 | Raoultella planticola |
| 19 | 2479773 | 2480009 | - | NZ_CP046672.1 | Raoultella ornithinolytica |
| 20 | 2343589 | 2343825 | - | NZ_CP041247.1 | Raoultella electrica |
| 21 | 1941955 | 1942191 | - | NZ_CP017184.1 | Enterobacter roggenkampii |
| 22 | 2445943 | 2446152 | + | NZ_CP012871.1 | [Enterobacter] lignolyticus |
| 23 | 2700259 | 2700495 | - | NZ_CP036175.1 | Klebsiella huaxiensis |
| 24 | 1968805 | 1969041 | - | NC_015968.1 | Enterobacter soli |
| 25 | 1440222 | 1440458 | + | NZ_CP045769.1 | Enterobacter cancerogenus |
| 26 | 1226797 | 1227033 | - | NZ_CP017279.1 | Enterobacter ludwigii |
| 27 | 3322780 | 3322971 | + | NZ_CP045205.1 | Citrobacter telavivensis |
| 28 | 2541782 | 2542018 | - | NZ_CP050508.1 | Raoultella terrigena |
| 29 | 1997760 | 1997996 | - | NZ_AP022508.1 | Enterobacter bugandensis |
| 30 | 2015171 | 2015407 | - | NZ_CP009756.1 | Enterobacter cloacae |
| 31 | 2626702 | 2626938 | - | NZ_CP060111.1 | Klebsiella michiganensis |
| 32 | 883518 | 883754 | - | NZ_CP023529.1 | Lelliottia amnigena |
| 33 | 3576763 | 3577002 | - | NZ_CP040428.1 | Jejubacter calystegiae |
| 34 | 530842 | 531078 | + | NZ_CP025034.2 | Enterobacter sp. SGAir0187 |
| 35 | 3908654 | 3908890 | - | NZ_CP053416.1 | Salmonella bongori |
| 36 | 2231705 | 2231941 | - | NZ_CP043318.1 | Enterobacter chengduensis |
| 37 | 2582319 | 2582555 | + | NZ_CP035129.1 | Kosakonia cowanii |
| 38 | 1519440 | 1519676 | - | NC_003197.2 | Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 |
| 39 | 2168418 | 2168648 | - | NZ_CP063425.1 | Kosakonia pseudosacchari |
| 40 | 2127116 | 2127352 | - | NZ_CP015113.1 | Kosakonia radicincitans |
| 41 | 2745585 | 2745821 | - | NZ_CP051548.1 | Phytobacter diazotrophicus |
| 42 | 1484020 | 1484256 | - | NZ_CP011602.1 | Phytobacter ursingii |
| 43 | 3007675 | 3007911 | + | NZ_CP014007.2 | Kosakonia oryzae |
| 44 | 2337840 | 2338076 | + | NC_017910.1 | Shimwellia blattae DSM 4481 = NBRC 105725 |
| 45 | 2859627 | 2859818 | + | NZ_CP023525.1 | Cedecea neteri |
| 46 | 1524431 | 1524625 | - | NC_013716.1 | Citrobacter rodentium ICC168 |
| 47 | 1959149 | 1959340 | - | NZ_CP012264.1 | Cronobacter condimenti 1330 |
| 48 | 2023230 | 2023466 | - | NZ_CP027986.1 | Enterobacter sichuanensis |
| 49 | 2014020 | 2014256 | - | NZ_CP012266.1 | Cronobacter dublinensis subsp. dublinensis LMG 23823 |
| 50 | 2091518 | 2091754 | - | NZ_AP023184.1 | Buttiauxella agrestis |
| 51 | 2203109 | 2203345 | + | NZ_CP013940.1 | Cronobacter malonaticus LMG 23826 |
| 52 | 2628421 | 2628612 | + | NZ_LR134201.1 | Cedecea lapagei |
| 53 | 1422863 | 1423099 | + | NZ_CP027107.1 | Cronobacter sakazakii |
| 54 | 2048139 | 2048375 | + | NZ_CP012268.1 | Cronobacter muytjensii ATCC 51329 |
| 55 | 1750382 | 1750606 | + | NZ_CP067057.1 | Rahnella aceris |
| 56 | 2860231 | 2860467 | + | NZ_LR134475.1 | Klebsiella aerogenes |
| 57 | 2179208 | 2179399 | - | NC_014306.1 | Erwinia billingiae Eb661 |
| 58 | 2453864 | 2454058 | + | NZ_CP011118.1 | Yersinia enterocolitica |
| 59 | 1965700 | 1965936 | - | NZ_CP012257.1 | Cronobacter universalis NCTC 9529 |
| 60 | 766122 | 766316 | + | NZ_CP009787.1 | Yersinia rohdei |
| 61 | 2203876 | 2204079 | - | NZ_CP043727.1 | Yersinia canariae |
| 62 | 2891515 | 2891742 | + | NZ_CP006664.1 | Edwardsiella anguillarum ET080813 |
| 63 | 314963 | 315199 | - | NZ_CP009781.1 | Yersinia aldovae 670-83 |
| 64 | 2455661 | 2455897 | + | NZ_CP045845.1 | Kluyvera intermedia |
| 65 | 2355035 | 2355271 | + | NZ_CP050150.1 | Hafnia alvei |
| 66 | 2133224 | 2133466 | + | NZ_LS483470.1 | Leminorella richardii |
| 67 | 2400966 | 2401160 | + | NZ_CP046293.1 | Yersinia intermedia |
| 68 | 1710470 | 1710664 | - | NZ_CP032487.1 | Yersinia hibernica |
| 69 | 4568244 | 4568435 | - | NZ_CP011254.1 | Serratia fonticola |
| 70 | 3758618 | 3758812 | - | NZ_CP065640.1 | Serratia rubidaea |
| 71 | 2160891 | 2161082 | + | NZ_LR134531.1 | Pragia fontium |
| 72 | 2315245 | 2315436 | - | NC_015567.1 | Serratia plymuthica AS9 |
| 73 | 1993730 | 1993921 | + | NZ_CP029185.2 | Limnobaculum parvum |
| 74 | 3774238 | 3774429 | + | NZ_CP007044.2 | Chania multitudinisentens RB-25 |
| 75 | 2062878 | 2063069 | + | NZ_CP034752.1 | Jinshanibacter zhutongyuii |
| 76 | 3705380 | 3705583 | - | NZ_CP042941.1 | Atlantibacter hermannii |
| 77 | 3626802 | 3626993 | + | NZ_CP054043.1 | Yersinia mollaretii ATCC 43969 |
| 78 | 255601 | 255840 | + | NZ_AP018685.1 | Vibrio rumoiensis |
| 79 | 3829040 | 3829279 | + | NZ_CP020388.1 | Pluralibacter gergoviae |
| 80 | 498056 | 498277 | + | NZ_LR134376.1 | Aeromonas encheleia |
| 81 | 4219741 | 4219959 | - | NZ_CP050851.1 | Aeromonas hydrophila |
| 82 | 2353440 | 2353634 | - | NZ_CP038662.1 | Serratia nematodiphila |
| 83 | 736604 | 736801 | - | NZ_CP023706.1 | Edwardsiella tarda |
| 84 | 2754589 | 2754783 | + | NZ_CP071320.1 | Serratia ureilytica |
| 85 | 1655936 | 1656127 | - | NZ_CP016948.1 | Serratia surfactantfaciens |
| 86 | 2399328 | 2399519 | - | NZ_LT906479.1 | Serratia ficaria |
| 87 | 2348655 | 2348846 | - | NZ_CP048784.1 | Serratia liquefaciens |
| 88 | 2036777 | 2036989 | + | NC_010694.1 | Erwinia tasmaniensis Et1/99 |
| 89 | 1846264 | 1846455 | - | NZ_CP015581.1 | Tatumella citrea |
| 90 | 2408447 | 2408638 | - | NZ_LR134494.1 | Serratia quinivorans |
++ More..
| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_000913.3
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF03702.16 | 0.87 | 77 | 1578.5 | opposite-strand | Anhydro-N-acetylmuramic acid kinase |
| 2 | PF05433.17 | 0.88 | 78 | 747 | same-strand | Glycine zipper 2TM domain |
| 3 | PF01047.24 | 0.9 | 80 | 199 | opposite-strand | MarR family |
| 4 | PF12802.9 | 0.9 | 80 | 199 | opposite-strand | MarR family |
| 5 | PF13463.8 | 0.9 | 80 | 199 | opposite-strand | Winged helix DNA-binding domain |
| 6 | PF13533.8 | 1.0 | 89 | 5.0 | same-strand | Biotin-lipoyl like |
| 7 | PF04632.14 | 0.99 | 88 | 868 | same-strand | Fusaric acid resistance protein family |
| 8 | PF00080.22 | 0.66 | 59 | 2880.0 | opposite-strand | Copper/zinc superoxide dismutase (SODC) |
| 9 | PF00248.23 | 0.84 | 75 | 3475.5 | opposite-strand | Aldo/keto reductase family |
| 10 | PF09864.11 | 0.81 | 72 | 2744 | opposite-strand | Membrane-bound lysozyme-inhibitor of c-type lysozyme |
| 11 | PF13515.8 | 0.97 | 86 | 867 | same-strand | Fusaric acid resistance protein-like |
| 12 | PF06945.15 | 0.66 | 59 | 4419.0 | opposite-strand | Protein of unknown function (DUF1289) |
++ More..