Result : P64463
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | Putative selenoprotein YdfZ |
| NCBI Accession ID | U00096.3 |
| Organism | Escherichia coli (strain K12) |
| Left | 1629215 |
| Right | 1629418 |
| Strand | + |
| Nucleotide Sequence | ATGACGACCTACGATCGTAACCGTAACGCAATCACCACTGGCAGCCGTGTTATGGTTAGCGGCACCGGTCACACTGGCAAGATCCTGTCGATTGATACTGAAGGTCTGACCGCTGAGCAAATCCGCCGCGGAAAAACCGTAGTTGTTGAAGGTTGTGAAGAGAAACTGGCACCACTGGACCTGATTCGTCTCGGCATGAACTAA |
| Sequence | MTTYDRNRNAITTGSRVMVSGTGHTGKILSIDTEGLTAEQIRRGKTVVVEGCEEKLAPLDLIRLGMN |
| Source of smORF | Swiss-Prot |
| Function | The ORF matches to the profile of cl26057. Profile Description: YdfZ protein. This small protein has a very limited distribution, being found so far only among some gamma-Proteobacteria. The member from Escherichia coli was shown to bind selenium in the absence of a working SelD-dependent selenium incorporation system. Note that while the E. coli member contains a single Cys residue, a likely selenium binding site, some other members of this protein family contain two Cys residues or none. [Unknown function, General] |
| Pubmed ID | 9278503 16738553 12084818 |
| Domain | CDD:421260 |
| Functional Category | Others |
| Uniprot ID | P64463 |
| ORF Length (Amino Acid) | 67 |
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| Conservation Analysis |
No. of Species: 59
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 2156610 | 2156813 | + | NZ_CP061527.1 | Shigella dysenteriae |
| 2 | 1586374 | 1586577 | - | NC_004337.2 | Shigella flexneri 2a str. 301 |
| 3 | 1629215 | 1629418 | + | NC_000913.3 | Escherichia coli str. K-12 substr. MG1655 |
| 4 | 1593120 | 1593323 | + | NZ_AP014857.1 | Escherichia albertii |
| 5 | 2155247 | 2155450 | + | NC_002695.2 | Escherichia coli O157:H7 str. Sakai |
| 6 | 2151615 | 2151818 | - | NZ_LR134340.1 | Escherichia marmotae |
| 7 | 559206 | 559409 | - | NZ_CP057657.1 | Escherichia fergusonii |
| 8 | 1587595 | 1587798 | - | NC_003197.2 | Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 |
| 9 | 3984466 | 3984669 | - | NZ_CP053416.1 | Salmonella bongori |
| 10 | 26959 | 27162 | + | NZ_CP044098.1 | Citrobacter portucalensis |
| 11 | 55461 | 55664 | - | NZ_CP033744.1 | Citrobacter freundii |
| 12 | 890399 | 890602 | - | NZ_CP038469.1 | Citrobacter tructae |
| 13 | 3734685 | 3734888 | - | NZ_LT556085.1 | Citrobacter amalonaticus |
| 14 | 1585293 | 1585496 | - | NC_013716.1 | Citrobacter rodentium ICC168 |
| 15 | 3249241 | 3249444 | + | NZ_CP045205.1 | Citrobacter telavivensis |
| 16 | 1019252 | 1019455 | - | NZ_CP023529.1 | Lelliottia amnigena |
| 17 | 1332854 | 1333057 | - | NZ_CP017279.1 | Enterobacter ludwigii |
| 18 | 2234936 | 2235139 | + | NZ_CP012266.1 | Cronobacter dublinensis subsp. dublinensis LMG 23823 |
| 19 | 2146693 | 2146896 | - | NZ_CP009756.1 | Enterobacter cloacae |
| 20 | 2119534 | 2119737 | - | NZ_AP022508.1 | Enterobacter bugandensis |
| 21 | 139210 | 139413 | - | NZ_AP019007.1 | Enterobacter oligotrophicus |
| 22 | 840382 | 840585 | + | NZ_CP045300.1 | Kosakonia arachidis |
| 23 | 2263095 | 2263298 | - | NZ_CP063425.1 | Kosakonia pseudosacchari |
| 24 | 1826901 | 1827104 | - | NZ_CP012268.1 | Cronobacter muytjensii ATCC 51329 |
| 25 | 2907554 | 2907757 | + | NZ_CP014007.2 | Kosakonia oryzae |
| 26 | 2073630 | 2073833 | - | NZ_CP017184.1 | Enterobacter roggenkampii |
| 27 | 416371 | 416574 | + | NZ_CP025034.2 | Enterobacter sp. SGAir0187 |
| 28 | 2361088 | 2361291 | - | NZ_CP043318.1 | Enterobacter chengduensis |
| 29 | 2259300 | 2259503 | - | NZ_CP015113.1 | Kosakonia radicincitans |
| 30 | 2508417 | 2508620 | + | NZ_CP035129.1 | Kosakonia cowanii |
| 31 | 2144380 | 2144583 | - | NZ_CP027986.1 | Enterobacter sichuanensis |
| 32 | 1667592 | 1667795 | - | NZ_CP011602.1 | Phytobacter ursingii |
| 33 | 1209102 | 1209305 | - | NZ_CP027107.1 | Cronobacter sakazakii |
| 34 | 863489 | 863692 | + | NZ_CP016337.1 | Kosakonia sacchari |
| 35 | 2241877 | 2242080 | + | NZ_CP012257.1 | Cronobacter universalis NCTC 9529 |
| 36 | 2950488 | 2950691 | - | NZ_CP051548.1 | Phytobacter diazotrophicus |
| 37 | 1978043 | 1978246 | - | NZ_CP013940.1 | Cronobacter malonaticus LMG 23826 |
| 38 | 2169019 | 2169222 | + | NZ_CP012264.1 | Cronobacter condimenti 1330 |
| 39 | 1346682 | 1346885 | + | NZ_CP045769.1 | Enterobacter cancerogenus |
| 40 | 2519549 | 2519752 | + | NZ_CP013990.1 | Leclercia adecarboxylata |
| 41 | 2159772 | 2159975 | - | NC_015968.1 | Enterobacter soli |
| 42 | 3817678 | 3817881 | - | NZ_CP042941.1 | Atlantibacter hermannii |
| 43 | 1363562 | 1363765 | - | NC_009792.1 | Citrobacter koseri ATCC BAA-895 |
| 44 | 2639905 | 2640108 | - | NZ_CP046672.1 | Raoultella ornithinolytica |
| 45 | 2507765 | 2507968 | - | NZ_CP046672.1 | Raoultella ornithinolytica |
| 46 | 3706023 | 3706226 | - | NZ_CP040428.1 | Jejubacter calystegiae |
| 47 | 3626192 | 3626395 | + | NZ_CP020388.1 | Pluralibacter gergoviae |
| 48 | 3245177 | 3245380 | + | NZ_CP060111.1 | Klebsiella michiganensis |
| 49 | 2651715 | 2651918 | - | NZ_CP060111.1 | Klebsiella michiganensis |
| 50 | 4634455 | 4634658 | + | NZ_CP026047.1 | Raoultella planticola |
| 51 | 4763744 | 4763947 | + | NZ_CP026047.1 | Raoultella planticola |
| 52 | 2541186 | 2541389 | + | NZ_CP023525.1 | Cedecea neteri |
| 53 | 2749370 | 2749573 | + | NZ_CP065838.1 | Klebsiella quasipneumoniae |
| 54 | 2444255 | 2444458 | - | NC_016845.1 | Klebsiella pneumoniae subsp. pneumoniae HS11286 |
| 55 | 2960651 | 2960854 | + | NZ_CP054254.1 | Klebsiella variicola |
| 56 | 2142252 | 2142455 | - | NZ_CP045845.1 | Kluyvera intermedia |
| 57 | 1754878 | 1755081 | - | NC_017910.1 | Shimwellia blattae DSM 4481 = NBRC 105725 |
| 58 | 381058 | 381261 | + | NZ_CP023706.1 | Edwardsiella tarda |
| 59 | 2369681 | 2369884 | - | NZ_CP041247.1 | Raoultella electrica |
| 60 | 1712553 | 1712753 | - | NZ_CP050150.1 | Hafnia alvei |
| 61 | 1717068 | 1717271 | - | NZ_AP023184.1 | Buttiauxella agrestis |
| 62 | 2732171 | 2732374 | - | NZ_CP036175.1 | Klebsiella huaxiensis |
| 63 | 2833243 | 2833446 | + | NZ_LR134475.1 | Klebsiella aerogenes |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_CP061527.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF01432.22 | 0.68 | 40 | 1959 | opposite-strand | Peptidase family M3 |
| 2 | PF00106.27 | 0.71 | 42 | 1017 | same-strand | short chain dehydrogenase |
| 3 | PF13561.8 | 0.71 | 42 | 1017 | same-strand | Enoyl-(Acyl carrier protein) reductase |
| 4 | PF08659.12 | 0.71 | 42 | 1017 | same-strand | KR domain |
| 5 | PF07729.14 | 0.71 | 42 | 239 | same-strand | FCD domain |
| 6 | PF00392.23 | 0.71 | 42 | 239 | same-strand | Bacterial regulatory proteins, gntR family |
| 7 | PF08125.15 | 0.69 | 41 | 47.5 | opposite-strand | Mannitol dehydrogenase C-terminal domain |
| 8 | PF01232.25 | 0.69 | 41 | 50.0 | opposite-strand | Mannitol dehydrogenase Rossmann domain |
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