Result : P62232
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | 30S ribosomal protein S16 |
| NCBI Accession ID | |
| Organism | Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni (strain Fiocruz L1-130) |
| Left | |
| Right | |
| Strand | |
| Nucleotide Sequence | |
| Sequence | MVKLRLQRTGTKHDPHYRIVAADSRSPRDGKFVDIVGHYHPAQIKEQTTFNKEKILTWLKNGAQPTGTVLNLFKNAGIWAEYKTTLKK |
| Source of smORF | Swiss-Prot |
| Function | The ORF matches to the profile of cl00368. Profile Description: Ribosomal protein S16. This model describes ribosomal S16 of bacteria and organelles. [Protein synthesis, Ribosomal proteins: synthesis and modification] |
| Pubmed ID | 15028702 |
| Domain | CDD:412339 |
| Functional Category | Ribosomal_protein |
| Uniprot ID | P62232 |
| ORF Length (Amino Acid) | 88 |
++ More..
| Conservation Analysis |
No. of Species: 227
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 4209228 | 4209494 | + | NZ_CP020414.2 | Leptospira interrogans serovar Copenhageni |
| 2 | 428473 | 428739 | + | NZ_CP033614.1 | Leptospira kmetyi |
| 3 | 2103682 | 2103948 | + | NZ_CP015217.1 | Leptospira tipperaryensis |
| 4 | 3108618 | 3108884 | - | NZ_CP030142.1 | Leptospira mayottensis |
| 5 | 2401859 | 2402125 | + | NZ_CP040840.1 | Leptospira weilii |
| 6 | 2363589 | 2363855 | - | NZ_CP026671.1 | Leptospira borgpetersenii serovar Ceylonica |
| 7 | 139509 | 139754 | + | NZ_CP009709.1 | Weizmannia coagulans DSM 1 = ATCC 7050 |
| 8 | 869434 | 869703 | + | NZ_CP011391.1 | Faecalibaculum rodentium |
| 9 | 822070 | 822297 | - | NZ_CP009761.1 | Parvimonas micra |
| 10 | 2104733 | 2104948 | - | NZ_CP059603.1 | Levilactobacillus suantsaii |
| 11 | 1502814 | 1503062 | - | NZ_CP018180.1 | Liquorilactobacillus nagelii |
| 12 | 1439280 | 1439525 | - | NZ_CP014332.1 | Weissella jogaejeotgali |
| 13 | 1206135 | 1206380 | - | NZ_CP032627.1 | Lactococcus allomyrinae |
| 14 | 1609149 | 1609394 | - | NC_022369.1 | Lactococcus lactis subsp. cremoris KW2 |
| 15 | 854699 | 854947 | + | NZ_CP047141.1 | Ligilactobacillus animalis |
| 16 | 2300888 | 2301142 | + | NZ_CP059066.1 | Koleobacter methoxysyntrophicus |
| 17 | 985556 | 985828 | + | NZ_CP013213.1 | Erysipelothrix larvae |
| 18 | 1047007 | 1047279 | + | NC_014377.1 | Thermosediminibacter oceani DSM 16646 |
| 19 | 1102829 | 1103077 | + | NZ_LS483405.1 | Levilactobacillus brevis |
| 20 | 1097368 | 1097613 | + | NZ_CP030105.1 | Lactiplantibacillus plantarum |
| 21 | 1714573 | 1714818 | + | NZ_CP032757.1 | Lactiplantibacillus pentosus |
| 22 | 1616917 | 1617165 | + | NZ_CP043405.1 | Streptococcus ratti |
| 23 | 388238 | 388483 | + | NZ_CP023501.1 | Weissella paramesenteroides |
| 24 | 1291877 | 1292125 | - | NZ_AP014612.1 | Streptococcus troglodytae |
| 25 | 894477 | 894725 | + | NZ_LN898144.1 | Paucilactobacillus oligofermentans DSM 15707 = LMG 22743 |
| 26 | 1837268 | 1837516 | + | NZ_CP018906.1 | Lentilactobacillus curieae |
| 27 | 149719 | 149964 | - | NZ_CP022983.1 | Cytobacillus kochii |
| 28 | 1954699 | 1954965 | - | NZ_CP048104.1 | Kroppenstedtia pulmonis |
| 29 | 3239323 | 3239541 | - | NZ_AP023367.1 | Anaerocolumna cellulosilytica |
| 30 | 747085 | 747300 | + | NZ_CP027563.1 | Weissella confusa |
| 31 | 3094678 | 3094893 | - | NZ_CP014176.1 | Clostridium argentinense |
| 32 | 1743704 | 1743952 | - | NZ_CP047121.1 | Lentilactobacillus hilgardii |
| 33 | 579899 | 580171 | + | NC_017096.1 | Caldisericum exile AZM16c01 |
| 34 | 1221760 | 1222008 | - | NZ_CP044499.1 | Lapidilactobacillus dextrinicus |
| 35 | 3753667 | 3753885 | + | NZ_CP048000.1 | Anaerocolumna sedimenticola |
| 36 | 3082079 | 3082309 | - | NZ_CP009933.1 | Clostridium scatologenes |
| 37 | 795857 | 796105 | - | NZ_CP013237.1 | Streptococcus mutans |
| 38 | 2922376 | 2922591 | - | NZ_CP012033.1 | Levilactobacillus koreensis |
| 39 | 3988732 | 3988977 | - | NZ_CP024035.1 | Priestia aryabhattai |
| 40 | 1459617 | 1459862 | - | NZ_CP031733.1 | Streptococcus chenjunshii |
| 41 | 884508 | 884777 | - | NZ_AP019711.1 | Amedibacterium intestinale |
| 42 | 1180775 | 1181017 | + | NZ_CP035130.1 | Gudongella oleilytica |
| 43 | 2098625 | 2098873 | - | NZ_CP029971.1 | Lentilactobacillus kefiri |
| 44 | 265238 | 265483 | + | NZ_CP014835.1 | Streptococcus halotolerans |
| 45 | 2881687 | 2881935 | - | NZ_CP014912.1 | Secundilactobacillus paracollinoides |
| 46 | 2369952 | 2370200 | + | NZ_CP018796.1 | Lentilactobacillus parabuchneri |
| 47 | 4233689 | 4233913 | - | NZ_AP018449.1 | Methylomusa anaerophila |
| 48 | 1447493 | 1447711 | + | NC_020291.1 | Clostridium saccharoperbutylacetonicum N1-4(HMT) |
| 49 | 2289836 | 2290054 | + | NC_014393.1 | Clostridium cellulovorans 743B |
| 50 | 2332271 | 2332516 | - | NZ_CP011937.1 | Bacillus velezensis |
| 51 | 1628630 | 1628875 | + | NZ_CP053376.1 | Bacillus amyloliquefaciens |
| 52 | 1181299 | 1181544 | - | NZ_CP068170.1 | Erysipelatoclostridium ramosum |
| 53 | 2171952 | 2172197 | + | NZ_CP053989.1 | Niallia circulans |
| 54 | 1573996 | 1574214 | + | NC_009922.1 | Alkaliphilus oremlandii OhILAs |
| 55 | 1185898 | 1186128 | + | NZ_CP020953.1 | Clostridium drakei |
| 56 | 147171 | 147401 | + | NZ_CP011803.1 | Clostridium carboxidivorans P7 |
| 57 | 1078815 | 1079060 | + | NZ_AP019309.1 | Intestinibaculum porci |
| 58 | 1442475 | 1442705 | + | NC_011837.1 | Clostridium kluyveri NBRC 12016 |
| 59 | 667863 | 668111 | + | NZ_CP011403.1 | Ligilactobacillus salivarius str. Ren |
| 60 | 2567570 | 2567815 | - | NZ_CP018866.1 | Sutcliffiella cohnii |
| 61 | 1492753 | 1492998 | - | NZ_AP024085.1 | Faecalibacillus intestinalis |
| 62 | 1091052 | 1091303 | - | NZ_CP014872.1 | Fructilactobacillus lindneri |
| 63 | 2527247 | 2527468 | - | NZ_CP028842.1 | Clostridium botulinum |
| 64 | 1928728 | 1928979 | + | NZ_CP023392.1 | Lactococcus raffinolactis |
| 65 | 2793123 | 2793341 | - | NZ_CP049887.1 | Vagococcus hydrophili |
| 66 | 2763568 | 2763813 | - | NZ_CP018058.1 | Geobacillus thermocatenulatus |
| 67 | 508985 | 509230 | + | NZ_CP014161.1 | Aerococcus urinae |
| 68 | 1253411 | 1253653 | + | NZ_LR215050.1 | Acholeplasma hippikon |
| 69 | 1965693 | 1965941 | - | NZ_CP042371.1 | Secundilactobacillus malefermentans |
| 70 | 1362803 | 1363084 | - | NC_011297.1 | Dictyoglomus thermophilum H-6-12 |
| 71 | 1251201 | 1251467 | + | NC_015519.1 | Tepidanaerobacter acetatoxydans Re1 |
| 72 | 2789733 | 2789954 | - | NZ_CP011663.1 | Clostridium sporogenes |
| 73 | 2066730 | 2066975 | + | NZ_CP042593.1 | Bacillus dafuensis |
| 74 | 668328 | 668579 | + | NZ_CP045563.1 | Fructilactobacillus sanfranciscensis |
| 75 | 81771 | 82007 | - | NZ_CP008796.1 | Thermodesulfobacterium commune DSM 2178 |
| 76 | 428052 | 428297 | + | NZ_CP014699.1 | Streptococcus pantholopis |
| 77 | 1137960 | 1138205 | - | NZ_CP024610.1 | Lactobacillus terrae |
| 78 | 1445599 | 1445817 | + | NZ_CP060720.1 | Vagococcus carniphilus |
| 79 | 1553898 | 1554146 | - | NC_014334.2 | Lacticaseibacillus paracasei |
| 80 | 1532051 | 1532299 | - | NZ_AP012544.1 | Lacticaseibacillus casei DSM 20011 = JCM 1134 = ATCC 393 |
| 81 | 1536516 | 1536764 | - | NZ_LS991421.1 | Lacticaseibacillus zeae |
| 82 | 1036727 | 1036972 | - | NC_016605.1 | Pediococcus claussenii ATCC BAA-344 |
| 83 | 1547192 | 1547473 | - | NC_011661.1 | Dictyoglomus turgidum DSM 6724 |
| 84 | 124028 | 124273 | - | NZ_CP017786.1 | Bacillus xiamenensis |
| 85 | 1575194 | 1575439 | + | NZ_CP011150.1 | Bacillus altitudinis |
| 86 | 3743746 | 3743991 | - | NZ_CP043404.1 | Bacillus safensis |
| 87 | 2931751 | 2931996 | - | NZ_CP022657.1 | Tumebacillus algifaecis |
| 88 | 1208245 | 1208460 | + | NZ_LN879430.1 | Herbinix luporum |
| 89 | 1052095 | 1052343 | + | NZ_CP049886.1 | Vagococcus coleopterorum |
| 90 | 1200289 | 1200507 | + | NZ_CP017253.2 | Clostridium taeniosporum |
| 91 | 3434205 | 3434450 | + | NZ_CP021434.1 | Tumebacillus avium |
| 92 | 1278549 | 1278767 | + | NZ_CP027286.1 | Clostridium chauvoei |
| 93 | 1984689 | 1984955 | + | NZ_CP049740.1 | Jeotgalibaca arthritidis |
| 94 | 1040747 | 1040992 | - | NZ_CP017326.1 | Weissella soli |
| 95 | 855402 | 855647 | + | NC_008525.1 | Pediococcus pentosaceus ATCC 25745 |
| 96 | 1396417 | 1396635 | + | NZ_CP043998.1 | Clostridium diolis |
| 97 | 1755081 | 1755326 | + | NZ_CP019323.1 | Companilactobacillus allii |
| 98 | 1376885 | 1377127 | + | NZ_CP048649.1 | Aminipila butyrica |
| 99 | 766359 | 766604 | + | NZ_CP019981.1 | Pediococcus inopinatus |
| 100 | 911718 | 911963 | + | NZ_CP017237.1 | Moorella thermoacetica |
| 101 | 1693559 | 1693807 | - | NZ_CP017713.1 | Loigolactobacillus coryniformis subsp. coryniformis KCTC 3167 = DSM 20001 |
| 102 | 1501319 | 1501564 | + | NZ_CP040336.1 | Bacillus luti |
| 103 | 3658378 | 3658623 | - | NC_007530.2 | Bacillus anthracis str. 'Ames Ancestor' |
| 104 | 3727923 | 3728168 | - | NZ_CP064875.1 | Bacillus toyonensis |
| 105 | 3862973 | 3863218 | - | NC_011725.1 | Bacillus cereus B4264 |
| 106 | 3867215 | 3867460 | - | NZ_CP032365.1 | Bacillus wiedmannii |
| 107 | 1479389 | 1479634 | - | NC_022549.1 | Acholeplasma brassicae |
| 108 | 1951189 | 1951404 | + | NZ_CP012294.1 | Pediococcus damnosus |
| 109 | 1688663 | 1688881 | - | NZ_CP014204.2 | Clostridium baratii |
| 110 | 1807274 | 1807504 | - | NZ_CP014170.1 | Clostridium tyrobutyricum |
| 111 | 2591519 | 2591764 | + | NZ_CP037940.1 | Weissella cryptocerci |
| 112 | 3290567 | 3290785 | - | NZ_LR027880.1 | Roseburia intestinalis L1-82 |
| 113 | 1376469 | 1376714 | - | NZ_CP034234.1 | Erysipelothrix piscisicarius |
| 114 | 1403969 | 1404199 | - | NC_008593.1 | Clostridium novyi NT |
| 115 | 1789139 | 1789384 | - | NZ_CP038012.1 | Sporosarcina pasteurii |
| 116 | 2540574 | 2540819 | - | NZ_CP017560.1 | Sporosarcina ureilytica |
| 117 | 1918935 | 1919189 | + | NZ_CP036259.1 | Sporomusa termitida |
| 118 | 1604715 | 1604963 | - | NZ_CP040676.1 | Exiguobacterium mexicanum |
| 119 | 3277285 | 3277530 | - | NZ_CP014616.1 | Sporosarcina psychrophila |
| 120 | 1047061 | 1047309 | + | NZ_AP014680.1 | Paucilactobacillus hokkaidonensis JCM 18461 |
| 121 | 1573868 | 1574086 | + | NC_022571.1 | Clostridium saccharobutylicum DSM 13864 |
| 122 | 2379027 | 2379245 | - | NZ_CP020559.1 | Clostridium formicaceticum |
| 123 | 1887996 | 1888214 | - | NZ_HG917868.1 | Clostridium bornimense |
| 124 | 2526675 | 2526890 | - | NC_015275.1 | Cellulosilyticum lentocellum DSM 5427 |
| 125 | 1338855 | 1339070 | + | NZ_CP032364.1 | Lachnoanaerobaculum umeaense |
| 126 | 3625484 | 3625714 | + | NZ_CP012395.1 | Clostridium autoethanogenum DSM 10061 |
| 127 | 1389428 | 1389658 | + | NC_014328.1 | Clostridium ljungdahlii DSM 13528 |
| 128 | 1243810 | 1244052 | - | NC_010163.1 | Acholeplasma laidlawii PG-8A |
| 129 | 1472664 | 1472894 | - | NC_014410.1 | Thermoanaerobacterium thermosaccharolyticum DSM 571 |
| 130 | 1156222 | 1156470 | + | NZ_CP011366.1 | Salinicoccus halodurans |
| 131 | 1311529 | 1311774 | + | NZ_LR134439.1 | Erysipelothrix rhusiopathiae |
| 132 | 1706881 | 1707123 | - | NC_014614.1 | Acetoanaerobium sticklandii |
| 133 | 334234 | 334491 | + | NZ_CP055143.1 | Mycoplasma hominis |
| 134 | 1219060 | 1219320 | + | NC_013216.1 | Desulfofarcimen acetoxidans DSM 771 |
| 135 | 1487224 | 1487442 | - | NZ_LR590481.1 | Hathewaya histolytica |
| 136 | 679720 | 679965 | + | NZ_CP044496.1 | Lactobacillus acetotolerans |
| 137 | 1161472 | 1161690 | + | NZ_CP030775.1 | Clostridium butyricum |
| 138 | 1646403 | 1646648 | + | NC_013204.1 | Eggerthella lenta DSM 2243 |
| 139 | 2128840 | 2129058 | - | NZ_LR699011.1 | Roseburia hominis |
| 140 | 822027 | 822245 | + | NC_011898.1 | Ruminiclostridium cellulolyticum H10 |
| 141 | 1325418 | 1325636 | + | NZ_CP040058.1 | Anaerostipes rhamnosivorans |
| 142 | 2232953 | 2233171 | - | NZ_CP036345.1 | Anaerostipes caccae L1-92 |
| 143 | 2761507 | 2761725 | - | NC_009633.1 | Alkaliphilus metalliredigens QYMF |
| 144 | 621270 | 621488 | + | NZ_CP045562.1 | Fructilactobacillus fructivorans |
| 145 | 1905122 | 1905367 | + | NC_015687.1 | Clostridium acetobutylicum DSM 1731 |
| 146 | 1302405 | 1302623 | + | NC_020134.1 | Thermoclostridium stercorarium subsp. stercorarium DSM 8532 |
| 147 | 895383 | 895628 | + | NZ_CP053421.1 | Pediococcus acidilactici |
| 148 | 1482970 | 1483200 | - | NZ_CP047602.1 | Thermoanaerobacterium aotearoense |
| 149 | 1406070 | 1406300 | - | NC_015555.1 | Thermoanaerobacterium xylanolyticum LX-11 |
| 150 | 613795 | 614046 | + | NZ_CP034044.1 | Mycoplasma struthionis |
| 151 | 861005 | 861223 | + | NC_014657.1 | Caldicellulosiruptor owensensis OL |
| 152 | 580285 | 580530 | + | NC_013895.2 | Mageeibacillus indolicus UPII9-5 |
| 153 | 2962791 | 2963009 | - | NC_010001.1 | Lachnoclostridium phytofermentans ISDg |
| 154 | 1218076 | 1218342 | + | NZ_CP039710.1 | Thermoactinomyces vulgaris |
| 155 | 1416853 | 1417095 | - | NC_013385.1 | Ammonifex degensii KC4 |
| 156 | 2293333 | 2293551 | - | NC_009437.1 | Caldicellulosiruptor saccharolyticus DSM 8903 |
| 157 | 325367 | 325636 | + | NC_019793.1 | Deinococcus peraridilitoris DSM 19664 |
| 158 | 188016 | 188234 | - | NZ_CP023671.1 | Clostridium septicum |
| 159 | 5757353 | 5757598 | - | NC_011768.1 | Desulfatibacillum aliphaticivorans |
| 160 | 2747011 | 2747250 | - | NC_014972.1 | Desulfobulbus propionicus DSM 2032 |
| 161 | 793804 | 794049 | - | NZ_CP035807.1 | Thiospirochaeta perfilievii |
| 162 | 1713084 | 1713302 | + | NZ_CP016502.1 | Acetivibrio thermocellus DSM 2360 |
| 163 | 270274 | 270492 | + | NZ_CP070062.1 | Coprococcus comes |
| 164 | 2204819 | 2205037 | - | NC_008261.1 | Clostridium perfringens ATCC 13124 |
| 165 | 4130752 | 4131012 | + | NC_008095.1 | Myxococcus xanthus DK 1622 |
| 166 | 286362 | 286610 | + | NZ_CP011389.1 | Deinococcus soli (ex Cha et al. 2016) |
| 167 | 1622207 | 1622425 | - | NZ_CP022413.2 | Blautia hansenii DSM 20583 |
| 168 | 3088140 | 3088373 | - | NZ_CP054140.1 | Desulfobulbus oligotrophicus |
| 169 | 58499 | 58741 | + | NZ_LR130778.1 | Petrocella atlantisensis |
| 170 | 3258745 | 3258960 | - | NZ_CP022464.2 | Enterocloster bolteae |
| 171 | 1228318 | 1228560 | + | NZ_CP007452.1 | Peptoclostridium acidaminophilum DSM 3953 |
| 172 | 230059 | 230316 | + | NZ_LR215047.1 | Mycoplasma arthritidis |
| 173 | 2015703 | 2015921 | - | NZ_CP030280.1 | Blautia argi |
| 174 | 2268505 | 2268720 | - | NC_014376.1 | [Clostridium] saccharolyticum WM1 |
| 175 | 1778875 | 1779123 | + | NZ_CP013910.1 | Deinococcus actinosclerus |
| 176 | 1026830 | 1027072 | + | NZ_CP011402.1 | Denitrobacterium detoxificans |
| 177 | 731811 | 732053 | + | NZ_CP009302.1 | Berryella intestinalis |
| 178 | 1289950 | 1290198 | + | NZ_CP036150.1 | Oceanispirochaeta crateris |
| 179 | 1280337 | 1280555 | - | NZ_CP027002.1 | [Ruminococcus] gnavus ATCC 29149 |
| 180 | 1309769 | 1310029 | - | NZ_CP009170.1 | Thermoanaerobacter kivui |
| 181 | 1609684 | 1609950 | - | NZ_LR134089.1 | Staphylococcus saprophyticus |
| 182 | 2641179 | 2641424 | - | NC_022097.1 | Treponema pedis str. T A4 |
| 183 | 1653022 | 1653240 | - | NC_014392.1 | Caldicellulosiruptor obsidiansis OB47 |
| 184 | 1449802 | 1450020 | - | NC_015949.1 | Caldicellulosiruptor lactoaceticus 6A |
| 185 | 1786397 | 1786615 | - | NC_014652.1 | Caldicellulosiruptor hydrothermalis 108 |
| 186 | 1022865 | 1023083 | + | NC_014721.1 | Caldicellulosiruptor kristjanssonii I77R1B |
| 187 | 1073017 | 1073235 | + | NC_012034.1 | Caldicellulosiruptor bescii DSM 6725 |
| 188 | 253890 | 254108 | - | NZ_LT990039.1 | Massilistercora timonensis |
| 189 | 1539602 | 1539838 | - | NC_017094.1 | Leptospirillum ferrooxidans C2-3 |
| 190 | 1303560 | 1303820 | - | NC_014209.1 | Thermoanaerobacter mathranii subsp. mathranii str. A3 |
| 191 | 1307740 | 1308000 | - | NC_014964.1 | Thermoanaerobacter brockii subsp. finnii Ako-1 |
| 192 | 1281762 | 1282022 | - | NC_013921.1 | Thermoanaerobacter italicus Ab9 |
| 193 | 1419265 | 1419525 | - | NC_015958.1 | Thermoanaerobacter wiegelii Rt8.B1 |
| 194 | 705577 | 705813 | + | NC_015682.1 | Thermodesulfobacterium geofontis OPF15 |
| 195 | 535758 | 536006 | - | NC_015732.1 | Treponema caldarium DSM 7334 |
| 196 | 4169161 | 4169421 | + | NZ_CP022203.1 | Corallococcus macrosporus DSM 14697 |
| 197 | 4291725 | 4291985 | - | NZ_CP012109.1 | Myxococcus hansupus |
| 198 | 1414383 | 1414640 | + | NC_008148.1 | Rubrobacter xylanophilus DSM 9941 |
| 199 | 1872404 | 1872622 | - | NC_014720.1 | Caldicellulosiruptor kronotskyensis 2002 |
| 200 | 1207686 | 1207931 | - | NZ_LT821227.1 | Phoenicibacter congonensis |
| 201 | 2431562 | 2431780 | + | NZ_CP039126.1 | Blautia producta |
| 202 | 5695193 | 5695411 | - | NC_017030.1 | Corallococcus coralloides DSM 2259 |
| 203 | 428129 | 428383 | + | NZ_CP031513.1 | Bombilactobacillus bombi |
| 204 | 1145135 | 1145392 | - | NC_008609.1 | Pelobacter propionicus DSM 2379 |
| 205 | 1328351 | 1328569 | - | NZ_LT635479.1 | Lachnoclostridium phocaeense |
| 206 | 2084364 | 2084597 | + | NC_014758.1 | Calditerrivibrio nitroreducens DSM 19672 |
| 207 | 774850 | 775065 | - | NZ_HF545616.1 | Ruminococcus bicirculans |
| 208 | 1062206 | 1062451 | - | NC_012778.1 | [Eubacterium] eligens ATCC 27750 |
| 209 | 2221058 | 2221297 | - | NZ_CP048436.1 | Flavonifractor plautii |
| 210 | 1822142 | 1822384 | + | NC_015589.1 | Desulfotomaculum ruminis DSM 2154 |
| 211 | 3166165 | 3166383 | - | NZ_CP036170.1 | [Clostridium] scindens ATCC 35704 |
| 212 | 565975 | 566214 | - | NC_016629.1 | Desulfocurvibacter africanus subsp. africanus str. Walvis Bay |
| 213 | 2031922 | 2032176 | + | NC_014364.1 | Sediminispirochaeta smaragdinae DSM 11293 |
| 214 | 1432778 | 1433023 | - | NZ_CP009228.1 | Treponema putidum |
| 215 | 901307 | 901552 | + | NC_002967.9 | Treponema denticola ATCC 35405 |
| 216 | 1569646 | 1569894 | + | NC_008025.1 | Deinococcus geothermalis DSM 11300 |
| 217 | 1999977 | 2000222 | - | NZ_CP012332.1 | Vulgatibacter incomptus |
| 218 | 1879313 | 1879528 | - | NZ_CP025197.1 | Acetivibrio saccincola |
| 219 | 268653 | 268889 | + | NC_022538.1 | Acholeplasma palmae J233 |
| 220 | 214657 | 214911 | - | NZ_CP029295.1 | Mycoplasma phocidae |
| 221 | 3160334 | 3160579 | + | NC_006138.1 | Desulfotalea psychrophila LSv54 |
| 222 | 1402034 | 1402276 | + | NZ_CP031115.1 | Rubrobacter indicoceani |
| 223 | 3519490 | 3519726 | - | NC_012108.1 | Desulfobacterium autotrophicum HRM2 |
| 224 | 2673388 | 2673606 | - | NC_014624.2 | Eubacterium callanderi |
| 225 | 3103028 | 3103246 | + | NZ_CP019962.1 | Eubacterium limosum |
| 226 | 1470522 | 1470764 | + | NZ_CP007514.1 | Rubrobacter radiotolerans |
| 227 | 1669968 | 1670213 | - | NC_022567.1 | Adlercreutzia equolifaciens DSM 19450 |
++ More..
| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_CP009709.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF13083.8 | 0.9 | 205 | 18 | same-strand | KH domain |
| 2 | PF01782.20 | 0.91 | 206 | 338.5 | same-strand | RimM N-terminal domain |
| 3 | PF05239.18 | 0.85 | 193 | 340 | same-strand | PRC-barrel domain |
| 4 | PF01746.23 | 0.94 | 213 | 847 | same-strand | tRNA (Guanine-1)-methyltransferase |
| 5 | PF01245.22 | 0.79 | 180 | 1719.0 | same-strand | Ribosomal protein L19 |
| 6 | PF00448.24 | 0.78 | 178 | 137 | same-strand | SRP54-type protein, GTPase domain |
| 7 | PF02881.21 | 0.78 | 178 | 136.0 | same-strand | SRP54-type protein, helical bundle domain |
| 8 | PF04297.16 | 0.64 | 146 | 1467.5 | same-strand | Putative helix-turn-helix protein, YlxM / p13 like |
| 9 | PF02978.21 | 0.78 | 178 | 93.0 | same-strand | Signal peptide binding domain |
++ More..