* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_CP029971.1
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF00861.24
|
1.0
|
4
|
1817.5
|
same-strand
|
Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast
|
2
|
PF00347.25
|
1.0
|
4
|
1249.5
|
same-strand
|
Ribosomal protein L6
|
3
|
PF00410.21
|
1.0
|
4
|
821.0
|
same-strand
|
Ribosomal protein S8
|
4
|
PF00253.23
|
0.75
|
3
|
587
|
same-strand
|
Ribosomal protein S14p/S29e
|
5
|
PF00673.23
|
1.0
|
4
|
27.5
|
same-strand
|
ribosomal L5P family C-terminus
|
6
|
PF00281.21
|
1.0
|
4
|
27.5
|
same-strand
|
Ribosomal protein L5
|
7
|
PF00238.21
|
1.0
|
4
|
149.5
|
same-strand
|
Ribosomal protein L14p/L23e
|
8
|
PF00366.22
|
1.0
|
4
|
562.5
|
same-strand
|
Ribosomal protein S17
|
9
|
PF00831.25
|
1.0
|
4
|
853.5
|
same-strand
|
Ribosomal L29 protein
|
10
|
PF00252.20
|
1.0
|
4
|
1039.0
|
same-strand
|
Ribosomal protein L16p/L10e
|
11
|
PF00189.22
|
1.0
|
4
|
1476.5
|
same-strand
|
Ribosomal protein S3, C-terminal domain
|
12
|
PF07650.19
|
1.0
|
4
|
1476.5
|
same-strand
|
KH domain
|
++ More..