Result : P56614
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | Uncharacterized protein YmdF |
| NCBI Accession ID | U00096.3 |
| Organism | Escherichia coli (strain K12) |
| Left | 1068081 |
| Right | 1068254 |
| Strand | + |
| Nucleotide Sequence | ATGGCAAACCATCGAGGCGGTTCCGGCAATTTTGCAGAAGACCGCGAAAGAGCATCAGAAGCAGGTAAAAAAGGTGGACAGCACAGCGGGGGTAATTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGTAAAAAAGGTGGTAAGAGCAGTCACGGCAAAAGCGACAACTAG |
| Sequence | MANHRGGSGNFAEDRERASEAGKKGGQHSGGNFKNDPQRASEAGKKGGKSSHGKSDN |
| Source of smORF | Swiss-Prot |
| Function | |
| Pubmed ID | 8905232 9278503 16738553 |
| Domain | |
| Functional Category | Others |
| Uniprot ID | P56614 |
| ORF Length (Amino Acid) | 57 |
++ More..
| Conservation Analysis |
No. of Species: 82
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 2682320 | 2682493 | - | NZ_CP061527.1 | Shigella dysenteriae |
| 2 | 1068081 | 1068254 | + | NC_000913.3 | Escherichia coli str. K-12 substr. MG1655 |
| 3 | 141299 | 141472 | + | NZ_CP057657.1 | Escherichia fergusonii |
| 4 | 1729144 | 1729317 | + | NZ_LR134340.1 | Escherichia marmotae |
| 5 | 1079099 | 1079272 | + | NZ_AP014857.1 | Escherichia albertii |
| 6 | 2663447 | 2663620 | - | NZ_CP011602.1 | Phytobacter ursingii |
| 7 | 2275145 | 2275327 | + | NZ_CP011602.1 | Phytobacter ursingii |
| 8 | 2273874 | 2274050 | + | NZ_CP011602.1 | Phytobacter ursingii |
| 9 | 3893076 | 3893249 | - | NZ_CP051548.1 | Phytobacter diazotrophicus |
| 10 | 3514178 | 3514351 | + | NZ_CP051548.1 | Phytobacter diazotrophicus |
| 11 | 3515444 | 3515626 | + | NZ_CP051548.1 | Phytobacter diazotrophicus |
| 12 | 3646226 | 3646399 | - | NZ_CP036175.1 | Klebsiella huaxiensis |
| 13 | 1898338 | 1898511 | - | NC_009792.1 | Citrobacter koseri ATCC BAA-895 |
| 14 | 3696871 | 3697044 | - | NZ_CP045205.1 | Citrobacter telavivensis |
| 15 | 1684557 | 1684730 | + | NC_015968.1 | Enterobacter soli |
| 16 | 841115 | 841285 | - | NZ_CP025034.2 | Enterobacter sp. SGAir0187 |
| 17 | 283401 | 283586 | + | NZ_CP025034.2 | Enterobacter sp. SGAir0187 |
| 18 | 2868961 | 2869137 | - | NZ_AP023184.1 | Buttiauxella agrestis |
| 19 | 3280504 | 3280677 | - | NZ_CP065838.1 | Klebsiella quasipneumoniae |
| 20 | 3108433 | 3108618 | - | NZ_CP065838.1 | Klebsiella quasipneumoniae |
| 21 | 2427587 | 2427772 | + | NZ_CP065838.1 | Klebsiella quasipneumoniae |
| 22 | 1973724 | 1973897 | + | NC_016845.1 | Klebsiella pneumoniae subsp. pneumoniae HS11286 |
| 23 | 2090035 | 2090220 | + | NC_016845.1 | Klebsiella pneumoniae subsp. pneumoniae HS11286 |
| 24 | 2810084 | 2810269 | - | NC_016845.1 | Klebsiella pneumoniae subsp. pneumoniae HS11286 |
| 25 | 3530218 | 3530391 | - | NZ_CP054254.1 | Klebsiella variicola |
| 26 | 3346962 | 3347147 | - | NZ_CP054254.1 | Klebsiella variicola |
| 27 | 2516789 | 2516974 | + | NZ_CP054254.1 | Klebsiella variicola |
| 28 | 2936076 | 2936249 | - | NZ_LR134201.1 | Cedecea lapagei |
| 29 | 1612717 | 1612890 | - | NZ_CP038469.1 | Citrobacter tructae |
| 30 | 557289 | 557462 | - | NZ_CP044098.1 | Citrobacter portucalensis |
| 31 | 4556514 | 4556687 | + | NZ_CP033744.1 | Citrobacter freundii |
| 32 | 616992 | 617177 | + | NZ_CP033744.1 | Citrobacter freundii |
| 33 | 2835245 | 2835424 | - | NZ_CP045845.1 | Kluyvera intermedia |
| 34 | 1728662 | 1728832 | + | NZ_CP027986.1 | Enterobacter sichuanensis |
| 35 | 2248580 | 2248765 | - | NZ_CP027986.1 | Enterobacter sichuanensis |
| 36 | 1669715 | 1669885 | + | NZ_CP017184.1 | Enterobacter roggenkampii |
| 37 | 2216917 | 2217102 | - | NZ_CP017184.1 | Enterobacter roggenkampii |
| 38 | 1714304 | 1714474 | + | NZ_CP009756.1 | Enterobacter cloacae |
| 39 | 2287231 | 2287416 | - | NZ_CP009756.1 | Enterobacter cloacae |
| 40 | 3719942 | 3720115 | + | NZ_CP026047.1 | Raoultella planticola |
| 41 | 3525661 | 3525834 | - | NZ_CP046672.1 | Raoultella ornithinolytica |
| 42 | 2842324 | 2842500 | - | NZ_CP054058.1 | Scandinavium goeteborgense |
| 43 | 3819087 | 3819260 | - | NZ_CP060111.1 | Klebsiella michiganensis |
| 44 | 2606764 | 2606949 | - | NZ_CP060111.1 | Klebsiella michiganensis |
| 45 | 1818624 | 1818797 | + | NZ_CP012871.1 | [Enterobacter] lignolyticus |
| 46 | 1916751 | 1916924 | + | NZ_CP043318.1 | Enterobacter chengduensis |
| 47 | 2492261 | 2492446 | - | NZ_CP043318.1 | Enterobacter chengduensis |
| 48 | 1785127 | 1785300 | - | NZ_CP027107.1 | Cronobacter sakazakii |
| 49 | 1597857 | 1598030 | - | NZ_CP027107.1 | Cronobacter sakazakii |
| 50 | 3638170 | 3638343 | - | NZ_CP050508.1 | Raoultella terrigena |
| 51 | 2429266 | 2429451 | + | NZ_CP050508.1 | Raoultella terrigena |
| 52 | 2699632 | 2699817 | + | NZ_CP050508.1 | Raoultella terrigena |
| 53 | 3341849 | 3342022 | - | NZ_CP041247.1 | Raoultella electrica |
| 54 | 4198320 | 4198490 | + | NZ_AP019007.1 | Enterobacter oligotrophicus |
| 55 | 1566309 | 1566494 | + | NZ_AP019007.1 | Enterobacter oligotrophicus |
| 56 | 3161049 | 3161222 | - | NZ_CP023525.1 | Cedecea neteri |
| 57 | 3252816 | 3252989 | - | NZ_LR134475.1 | Klebsiella aerogenes |
| 58 | 2671686 | 2671871 | - | NZ_LR134475.1 | Klebsiella aerogenes |
| 59 | 3600650 | 3600817 | + | NZ_CP053416.1 | Salmonella bongori |
| 60 | 3988929 | 3989111 | + | NZ_CP053416.1 | Salmonella bongori |
| 61 | 4336832 | 4337014 | + | NZ_CP053416.1 | Salmonella bongori |
| 62 | 1206192 | 1206359 | + | NC_003197.2 | Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 |
| 63 | 1825552 | 1825734 | + | NC_003197.2 | Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 |
| 64 | 1592067 | 1592249 | + | NC_003197.2 | Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 |
| 65 | 3077940 | 3078116 | - | NZ_CP013990.1 | Leclercia adecarboxylata |
| 66 | 2206844 | 2207026 | - | NZ_CP013990.1 | Leclercia adecarboxylata |
| 67 | 1121800 | 1121985 | - | NZ_CP013990.1 | Leclercia adecarboxylata |
| 68 | 1703411 | 1703581 | + | NZ_AP022508.1 | Enterobacter bugandensis |
| 69 | 2243582 | 2243767 | - | NZ_AP022508.1 | Enterobacter bugandensis |
| 70 | 884778 | 884948 | + | NZ_CP017279.1 | Enterobacter ludwigii |
| 71 | 1464552 | 1464731 | - | NZ_CP017279.1 | Enterobacter ludwigii |
| 72 | 1785151 | 1785324 | - | NZ_CP045769.1 | Enterobacter cancerogenus |
| 73 | 1215183 | 1215368 | + | NZ_CP045769.1 | Enterobacter cancerogenus |
| 74 | 2921013 | 2921198 | - | NZ_CP035129.1 | Kosakonia cowanii |
| 75 | 2072153 | 2072338 | - | NZ_CP035129.1 | Kosakonia cowanii |
| 76 | 3629226 | 3629399 | - | NZ_CP035129.1 | Kosakonia cowanii |
| 77 | 3275394 | 3275570 | + | NZ_CP040428.1 | Jejubacter calystegiae |
| 78 | 584093 | 584266 | + | NZ_CP023529.1 | Lelliottia amnigena |
| 79 | 2337304 | 2337489 | + | NZ_CP023529.1 | Lelliottia amnigena |
| 80 | 1302692 | 1302868 | - | NZ_CP016337.1 | Kosakonia sacchari |
| 81 | 371297 | 371479 | - | NZ_CP016337.1 | Kosakonia sacchari |
| 82 | 2044001 | 2044174 | - | NZ_CP016337.1 | Kosakonia sacchari |
| 83 | 2534730 | 2534903 | - | NZ_CP013940.1 | Cronobacter malonaticus LMG 23826 |
| 84 | 2381644 | 2381817 | - | NZ_CP013940.1 | Cronobacter malonaticus LMG 23826 |
| 85 | 1609407 | 1609580 | + | NZ_CP012257.1 | Cronobacter universalis NCTC 9529 |
| 86 | 1783467 | 1783640 | + | NZ_CP012257.1 | Cronobacter universalis NCTC 9529 |
| 87 | 2420393 | 2420566 | - | NZ_CP012268.1 | Cronobacter muytjensii ATCC 51329 |
| 88 | 2219764 | 2219937 | - | NZ_CP012268.1 | Cronobacter muytjensii ATCC 51329 |
| 89 | 1658655 | 1658828 | + | NZ_CP012266.1 | Cronobacter dublinensis subsp. dublinensis LMG 23823 |
| 90 | 1812343 | 1812516 | + | NZ_CP012266.1 | Cronobacter dublinensis subsp. dublinensis LMG 23823 |
| 91 | 2515355 | 2515531 | - | NC_017910.1 | Shimwellia blattae DSM 4481 = NBRC 105725 |
| 92 | 1840633 | 1840806 | + | NZ_CP015113.1 | Kosakonia radicincitans |
| 93 | 2812142 | 2812324 | + | NZ_CP015113.1 | Kosakonia radicincitans |
| 94 | 3357789 | 3357962 | - | NZ_CP014007.2 | Kosakonia oryzae |
| 95 | 2379345 | 2379527 | - | NZ_CP014007.2 | Kosakonia oryzae |
| 96 | 1198870 | 1199043 | - | NZ_CP045300.1 | Kosakonia arachidis |
| 97 | 295087 | 295269 | - | NZ_CP045300.1 | Kosakonia arachidis |
| 98 | 1763296 | 1763472 | + | NZ_CP063425.1 | Kosakonia pseudosacchari |
| 99 | 1018301 | 1018474 | + | NZ_CP063425.1 | Kosakonia pseudosacchari |
| 100 | 2747034 | 2747216 | + | NZ_CP063425.1 | Kosakonia pseudosacchari |
| 101 | 1607211 | 1607384 | + | NZ_CP012264.1 | Cronobacter condimenti 1330 |
| 102 | 1787400 | 1787573 | + | NZ_CP012264.1 | Cronobacter condimenti 1330 |
| 103 | 2264983 | 2265156 | + | NZ_CP012264.1 | Cronobacter condimenti 1330 |
| 104 | 3920886 | 3921071 | + | NZ_LT556085.1 | Citrobacter amalonaticus |
| 105 | 4012498 | 4012680 | + | NZ_LT556085.1 | Citrobacter amalonaticus |
| 106 | 3434124 | 3434303 | + | NZ_CP042941.1 | Atlantibacter hermannii |
| 107 | 3056240 | 3056413 | + | NZ_CP020388.1 | Pluralibacter gergoviae |
| 108 | 1855337 | 1855519 | + | NC_013716.1 | Citrobacter rodentium ICC168 |
| 109 | 1655300 | 1655482 | - | NC_002695.2 | Escherichia coli O157:H7 str. Sakai |
| 110 | 2968900 | 2969076 | - | NZ_CP006569.1 | Sodalis praecaptivus |
| 111 | 4093538 | 4093726 | - | NZ_CP006569.1 | Sodalis praecaptivus |
| 112 | 1438642 | 1438830 | - | NZ_CP006569.1 | Sodalis praecaptivus |
| 113 | 3287781 | 3287963 | - | NZ_CP028271.1 | Mixta intestinalis |
| 114 | 4000486 | 4000650 | - | NZ_CP028271.1 | Mixta intestinalis |
| 115 | 1415112 | 1415294 | - | NZ_CP028271.1 | Mixta intestinalis |
| 116 | 395025 | 395198 | - | NZ_CP028271.1 | Mixta intestinalis |
| 117 | 2633493 | 2633666 | - | NZ_CP038853.1 | Pantoea vagans |
| 118 | 1945878 | 1946057 | + | NZ_CP038853.1 | Pantoea vagans |
| 119 | 720187 | 720351 | + | NZ_CP038853.1 | Pantoea vagans |
| 120 | 2361706 | 2361873 | + | NC_002516.2 | Pseudomonas aeruginosa PAO1 |
| 121 | 4530583 | 4530750 | + | NZ_CP049115.1 | Pantoea stewartii |
| 122 | 278763 | 278930 | + | NZ_CP049115.1 | Pantoea stewartii |
| 123 | 2082486 | 2082650 | - | NZ_CP049115.1 | Pantoea stewartii |
| 124 | 277413 | 277580 | - | NZ_CP049115.1 | Pantoea stewartii |
| 125 | 209741 | 209917 | - | NZ_CP049115.1 | Pantoea stewartii |
| 126 | 1765754 | 1765942 | + | NC_014306.1 | Erwinia billingiae Eb661 |
| 127 | 1438095 | 1438268 | + | NZ_CP034148.1 | Pantoea agglomerans |
| 128 | 3343446 | 3343610 | - | NZ_CP034148.1 | Pantoea agglomerans |
| 129 | 1781769 | 1781948 | + | NZ_LN907827.1 | Erwinia gerundensis |
| 130 | 1011465 | 1011644 | - | NZ_LN907827.1 | Erwinia gerundensis |
| 131 | 2031025 | 2031207 | + | NZ_CP019706.1 | Pantoea alhagi |
| 132 | 3678448 | 3678630 | + | NZ_CP019706.1 | Pantoea alhagi |
| 133 | 441299 | 441472 | + | NZ_CP019706.1 | Pantoea alhagi |
| 134 | 1406575 | 1406739 | + | NZ_CP019706.1 | Pantoea alhagi |
| 135 | 2179147 | 2179329 | - | NZ_CP061511.1 | Mixta calida |
| 136 | 3832780 | 3832965 | - | NZ_CP061511.1 | Mixta calida |
| 137 | 1152027 | 1152200 | - | NZ_CP061511.1 | Mixta calida |
| 138 | 177579 | 177743 | - | NZ_CP061511.1 | Mixta calida |
| 139 | 2269621 | 2269803 | - | NZ_CP026377.1 | Mixta gaviniae |
| 140 | 4128227 | 4128412 | - | NZ_CP026377.1 | Mixta gaviniae |
| 141 | 1229316 | 1229489 | - | NZ_CP026377.1 | Mixta gaviniae |
| 142 | 242239 | 242403 | - | NZ_CP026377.1 | Mixta gaviniae |
| 143 | 2892003 | 2892182 | + | NZ_AP022642.1 | Pseudomonas otitidis |
| 144 | 2686149 | 2686322 | - | NZ_CP045720.1 | Pantoea eucalypti |
| 145 | 742646 | 742810 | + | NZ_CP045720.1 | Pantoea eucalypti |
| 146 | 3398261 | 3398428 | - | NZ_CP048833.1 | Pseudomonas multiresinivorans |
| 147 | 871693 | 871857 | + | NC_017554.1 | Pantoea ananatis PA13 |
| 148 | 2552529 | 2552705 | + | NC_017554.1 | Pantoea ananatis PA13 |
| 149 | 2611687 | 2611857 | - | NZ_CP013124.1 | Pseudomonas mendocina S5.2 |
| 150 | 100057 | 100233 | + | NZ_CP045722.1 | Pantoea eucalypti |
| 151 | 696495 | 696671 | - | NC_012560.1 | Azotobacter vinelandii DJ |
| 152 | 3860361 | 3860531 | + | NZ_CP011835.1 | Azotobacter chroococcum |
| 153 | 146485 | 146661 | + | NZ_CP038855.1 | Pantoea vagans |
| 154 | 2050925 | 2051089 | - | NZ_CP025086.1 | Methylovirgula ligni |
| 155 | 114639 | 114815 | - | NZ_CP034150.1 | Pantoea agglomerans |
| 156 | 2978685 | 2978858 | - | NZ_CP014158.1 | Pseudomonas citronellolis |
| 157 | 3246688 | 3246861 | - | NZ_CP014158.1 | Pseudomonas citronellolis |
| 158 | 2745472 | 2745645 | + | NZ_CP012676.1 | Pseudomonas versuta |
| 159 | 3079638 | 3079793 | + | NC_007963.1 | Chromohalobacter salexigens DSM 3043 |
++ More..
| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_CP061527.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF03358.17 | 0.74 | 61 | 391 | opposite-strand | NADPH-dependent FMN reductase |
| 2 | PF00258.27 | 0.74 | 61 | 391 | opposite-strand | Flavodoxin |
| 3 | PF13993.8 | 0.76 | 62 | 1007.0 | opposite-strand | YccJ-like protein |
| 4 | PF00328.24 | 0.62 | 51 | 1274 | same-strand | Histidine phosphatase superfamily (branch 2) |
++ More..