Result : P56551
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | Entericidin A |
| NCBI Accession ID | U21727.1 |
| Organism | Citrobacter freundii |
| Left | 2046 |
| Right | 2180 |
| Strand | - |
| Nucleotide Sequence | ATGATGAAACGTCTTCTCGGTCTTGTAATGCTACTCCTTTTCACCTGCACCCTCCTGACGGGATGCAATACCGCGCGCGGCTTCGGTGAAGACATCAAACATCTTGGCAATTCAATCTCTCACGCTGCCAGCTAA |
| Sequence | MMKRLLGLVMLLLFTCTLLTGCNTARGFGEDIKHLGNSISHAAS |
| Source of smORF | Swiss-Prot |
| Function | Acts as antidote to the effect of entericidin B. |
| Pubmed ID | 9677290 |
| Domain | CDD:400433,CDD:304653 |
| Functional Category | Others |
| Uniprot ID | P56551 |
| ORF Length (Amino Acid) | 44 |
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| Conservation Analysis |
No. of Species: 77
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 3170279 | 3170413 | + | NZ_CP033744.1 | Citrobacter freundii |
| 2 | 3426427 | 3426561 | - | NC_009792.1 | Citrobacter koseri ATCC BAA-895 |
| 3 | 2941075 | 2941209 | - | NZ_CP038469.1 | Citrobacter tructae |
| 4 | 1910640 | 1910774 | - | NZ_CP044098.1 | Citrobacter portucalensis |
| 5 | 3388630 | 3388761 | + | NC_013716.1 | Citrobacter rodentium ICC168 |
| 6 | 5230725 | 5230850 | + | NC_002695.2 | Escherichia coli O157:H7 str. Sakai |
| 7 | 4376317 | 4376442 | + | NC_000913.3 | Escherichia coli str. K-12 substr. MG1655 |
| 8 | 3296073 | 3296198 | + | NZ_CP057657.1 | Escherichia fergusonii |
| 9 | 3875007 | 3875132 | - | NZ_CP061527.1 | Shigella dysenteriae |
| 10 | 4480703 | 4480828 | + | NC_004337.2 | Shigella flexneri 2a str. 301 |
| 11 | 422986 | 423117 | + | NZ_CP012871.1 | [Enterobacter] lignolyticus |
| 12 | 423223 | 423369 | + | NZ_CP012871.1 | [Enterobacter] lignolyticus |
| 13 | 3873586 | 3873720 | + | NZ_CP023529.1 | Lelliottia amnigena |
| 14 | 3801635 | 3801766 | + | NZ_CP038498.1 | Pectobacterium punjabense |
| 15 | 4920307 | 4920441 | - | NZ_CP014007.2 | Kosakonia oryzae |
| 16 | 158825 | 158959 | + | NZ_CP015113.1 | Kosakonia radicincitans |
| 17 | 2698600 | 2698734 | - | NZ_CP045300.1 | Kosakonia arachidis |
| 18 | 134687 | 134818 | - | NZ_CP015749.1 | Pectobacterium parmentieri |
| 19 | 4414378 | 4414509 | - | NZ_CP013990.1 | Leclercia adecarboxylata |
| 20 | 2797833 | 2797964 | + | NZ_CP017482.1 | Pectobacterium polaris |
| 21 | 695933 | 696064 | + | NZ_CP015750.1 | Pectobacterium wasabiae CFBP 3304 |
| 22 | 4028852 | 4028983 | + | NZ_CP034938.1 | Pectobacterium odoriferum |
| 23 | 1048053 | 1048187 | + | NZ_CP045205.1 | Citrobacter telavivensis |
| 24 | 13221 | 13355 | - | NZ_CP051548.1 | Phytobacter diazotrophicus |
| 25 | 4149284 | 4149418 | - | NZ_CP054058.1 | Scandinavium goeteborgense |
| 26 | 397507 | 397641 | + | NC_015968.1 | Enterobacter soli |
| 27 | 619528 | 619662 | - | NZ_LT556085.1 | Citrobacter amalonaticus |
| 28 | 444532 | 444663 | + | NZ_CP063425.1 | Kosakonia pseudosacchari |
| 29 | 3591741 | 3591872 | + | NZ_CP016337.1 | Kosakonia sacchari |
| 30 | 1005372 | 1005503 | + | NZ_CP065044.1 | Pectobacterium aroidearum |
| 31 | 2532964 | 2533095 | - | NZ_CP047495.1 | Pectobacterium brasiliense |
| 32 | 3993619 | 3993750 | + | NZ_CP009125.1 | Pectobacterium atrosepticum |
| 33 | 855900 | 856031 | - | NZ_CP051652.1 | Pectobacterium carotovorum |
| 34 | 4580253 | 4580387 | + | NC_003197.2 | Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 |
| 35 | 2935758 | 2935892 | + | NZ_AP019007.1 | Enterobacter oligotrophicus |
| 36 | 402297 | 402422 | + | NZ_LR134340.1 | Escherichia marmotae |
| 37 | 4124737 | 4124871 | - | NZ_CP011602.1 | Phytobacter ursingii |
| 38 | 3780758 | 3780886 | - | NZ_CP009460.1 | Dickeya fangzhongdai |
| 39 | 1529630 | 1529740 | + | NZ_CP042382.1 | Pistricoccus aurantiacus |
| 40 | 3942933 | 3943061 | + | NC_014500.1 | Dickeya dadantii 3937 |
| 41 | 1150568 | 1150696 | + | NZ_CP015137.1 | Dickeya solani IPO 2222 |
| 42 | 1341974 | 1342105 | - | NZ_CP018139.1 | Halomonas aestuarii |
| 43 | 815463 | 815579 | - | NZ_CP042220.2 | Dickeya poaceiphila |
| 44 | 3511235 | 3511366 | - | NC_014532.2 | Halomonas elongata DSM 2581 |
| 45 | 868558 | 868686 | - | NC_012912.1 | Dickeya chrysanthemi Ech1591 |
| 46 | 3788046 | 3788174 | + | NZ_CP025799.1 | Dickeya zeae |
| 47 | 3778315 | 3778446 | - | NZ_CP061511.1 | Mixta calida |
| 48 | 1691411 | 1691545 | + | NZ_CP040428.1 | Jejubacter calystegiae |
| 49 | 874869 | 875000 | - | NZ_CP034036.1 | Brenneria nigrifluens DSM 30175 = ATCC 13028 |
| 50 | 5138325 | 5138456 | - | NZ_CP046672.1 | Raoultella ornithinolytica |
| 51 | 3828281 | 3828412 | - | NZ_CP012264.1 | Cronobacter condimenti 1330 |
| 52 | 488018 | 488149 | + | NZ_CP050150.1 | Hafnia alvei |
| 53 | 3666794 | 3666925 | - | NZ_CP015581.1 | Tatumella citrea |
| 54 | 4001021 | 4001152 | - | NZ_CP026377.1 | Mixta gaviniae |
| 55 | 3978537 | 3978665 | + | NZ_CP031560.1 | Dickeya dianthicola |
| 56 | 3381953 | 3382084 | - | NZ_CP014226.1 | Halomonas chromatireducens |
| 57 | 3920245 | 3920376 | - | NZ_CP012266.1 | Cronobacter dublinensis subsp. dublinensis LMG 23823 |
| 58 | 3125873 | 3126007 | - | NZ_CP045769.1 | Enterobacter cancerogenus |
| 59 | 2179911 | 2180042 | + | NZ_CP026047.1 | Raoultella planticola |
| 60 | 507627 | 507761 | + | NZ_CP043318.1 | Enterobacter chengduensis |
| 61 | 434747 | 434875 | + | NZ_CP023009.1 | Lonsdalea britannica |
| 62 | 4103603 | 4103734 | - | NC_017554.1 | Pantoea ananatis PA13 |
| 63 | 392061 | 392195 | + | NZ_AP022508.1 | Enterobacter bugandensis |
| 64 | 1417819 | 1417953 | + | NZ_CP020388.1 | Pluralibacter gergoviae |
| 65 | 589899 | 590027 | - | NZ_CP065534.1 | Lonsdalea populi |
| 66 | 4236014 | 4236148 | - | NZ_CP045845.1 | Kluyvera intermedia |
| 67 | 406505 | 406639 | + | NZ_CP009756.1 | Enterobacter cloacae |
| 68 | 2360387 | 2360512 | + | NZ_CP053416.1 | Salmonella bongori |
| 69 | 404890 | 405024 | + | NZ_CP027986.1 | Enterobacter sichuanensis |
| 70 | 415622 | 415756 | + | NZ_CP017184.1 | Enterobacter roggenkampii |
| 71 | 2193692 | 2193826 | - | NZ_CP025034.2 | Enterobacter sp. SGAir0187 |
| 72 | 3487937 | 3488071 | + | NZ_CP017279.1 | Enterobacter ludwigii |
| 73 | 431559 | 431690 | + | NC_016845.1 | Klebsiella pneumoniae subsp. pneumoniae HS11286 |
| 74 | 1880564 | 1880695 | + | NZ_CP065640.1 | Serratia rubidaea |
| 75 | 5071683 | 5071814 | - | NZ_CP054254.1 | Klebsiella variicola |
| 76 | 4789203 | 4789334 | - | NZ_CP065838.1 | Klebsiella quasipneumoniae |
| 77 | 3641682 | 3641810 | + | NZ_LT615367.1 | Dickeya aquatica |
| 78 | 4229894 | 4230025 | - | NZ_CP035129.1 | Kosakonia cowanii |
| 79 | 5557025 | 5557156 | - | NZ_CP036175.1 | Klebsiella huaxiensis |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_CP033744.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF04055.23 | 0.75 | 58 | 669.5 | opposite-strand | Radical SAM superfamily |
| 2 | PF09285.13 | 0.69 | 53 | 58 | same-strand | Elongation factor P, C-terminal |
| 3 | PF08207.14 | 0.69 | 53 | 58 | same-strand | Elongation factor P (EF-P) KOW-like domain |
| 4 | PF01132.22 | 0.69 | 53 | 58 | same-strand | Elongation factor P (EF-P) OB domain |
| 5 | PF08085.13 | 0.65 | 50 | 109.0 | same-strand | Entericidin EcnA/B family |
| 6 | PF00893.21 | 0.62 | 48 | 1141.0 | same-strand | Small Multidrug Resistance protein |
| 7 | PF08212.14 | 0.61 | 47 | 1460.5 | opposite-strand | Lipocalin-like domain |
| 8 | PF00061.25 | 0.61 | 47 | 1460.5 | opposite-strand | Lipocalin / cytosolic fatty-acid binding protein family |
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