* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_017379.1
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF00180.22
|
0.75
|
3
|
1808
|
same-strand
|
Isocitrate/isopropylmalate dehydrogenase
|
2
|
PF07509.13
|
0.75
|
3
|
1244
|
same-strand
|
Protein of unknown function (DUF1523)
|
3
|
PF00582.28
|
0.75
|
3
|
15
|
same-strand
|
Universal stress protein family
|
4
|
PF07724.16
|
1.0
|
4
|
0.0
|
same-strand
|
AAA domain (Cdc48 subfamily)
|
5
|
PF00004.31
|
1.0
|
4
|
0
|
same-strand
|
ATPase family associated with various cellular activities (AAA)
|
6
|
PF17871.3
|
1.0
|
4
|
0.0
|
same-strand
|
AAA lid domain
|
7
|
PF10431.11
|
1.0
|
4
|
0.0
|
same-strand
|
C-terminal, D2-small domain, of ClpB protein
|
8
|
PF07728.16
|
1.0
|
4
|
0.0
|
same-strand
|
AAA domain (dynein-related subfamily)
|
9
|
PF02261.18
|
0.75
|
3
|
2209
|
same-strand
|
Aspartate decarboxylase
|
10
|
PF02575.18
|
0.75
|
3
|
2570
|
same-strand
|
YbaB/EbfC DNA-binding family
|
11
|
PF13180.8
|
0.75
|
3
|
2863
|
same-strand
|
PDZ domain
|
12
|
PF04610.16
|
0.75
|
3
|
3866
|
same-strand
|
TrbL/VirB6 plasmid conjugal transfer protein
|
++ More..