Result : P55721
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | Probable translocation protein y4yM |
| NCBI Accession ID | U00090.2 |
| Organism | Sinorhizobium fredii (strain NBRC 101917 / NGR234) |
| Left | 77679 |
| Right | 77954 |
| Strand | - |
| Nucleotide Sequence | ATGACCGGATCCAGTATTGTTAGTCTAATGAGCCAATCATTGGTGGTTTTCATGATCTGGATTCTGCCCCCGCTCATTGCATCGGTGATTGTTGGCCTAACCATTGGCATCATCCAGGCAGCAACGCAGATCCAGGATGAAAGCCTGCCACTCACTGTGAAGCTCCTGGTCGTTGTCGCGGTGATTGGCCTGTTTGCGCCTGTGCTGAGCGCTCCGCTCATCGAGCTCGCGGACCAGATCTTTACCGAGTTTCCAGCAATGACACTCGGCTATTAG |
| Sequence | MTGSSIVSLMSQSLVVFMIWILPPLIASVIVGLTIGIIQAATQIQDESLPLTVKLLVVVAVIGLFAPVLSAPLIELADQIFTEFPAMTLGY |
| Source of smORF | Swiss-Prot |
| Function | Could be involved in the secretion of an unknown factor. |
| Pubmed ID | 9163424 19376903 |
| Domain | CDD:412617 |
| Functional Category | Others |
| Uniprot ID | P55721 |
| ORF Length (Amino Acid) | 91 |
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| Conservation Analysis |
No. of Species: 17
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 339748 | 339972 | - | NZ_CP029453.1 | Sinorhizobium fredii CCBAU 25509 |
| 2 | 348535 | 348759 | - | NZ_CP023069.1 | Ensifer sojae CCBAU 05684 |
| 3 | 5161138 | 5161362 | + | NC_002678.2 | Mesorhizobium japonicum MAFF 303099 |
| 4 | 373325 | 373549 | - | NZ_CP050299.1 | Mesorhizobium huakuii |
| 5 | 59760 | 59990 | + | NZ_CP034911.1 | Ensifer alkalisoli |
| 6 | 521900 | 522175 | - | NZ_CP015322.1 | Mesorhizobium amorphae CCNWGS0123 |
| 7 | 5096432 | 5096716 | - | NZ_CP016428.1 | Bradyrhizobium icense |
| 8 | 5054766 | 5055050 | - | NZ_CP042968.1 | Bradyrhizobium paxllaeri |
| 9 | 978720 | 978995 | - | NZ_CP029425.1 | Bradyrhizobium ottawaense |
| 10 | 1907906 | 1908181 | + | NZ_CP032617.1 | Bradyrhizobium diazoefficiens |
| 11 | 1792451 | 1792726 | + | NZ_CP058354.1 | Bradyrhizobium japonicum |
| 12 | 1766157 | 1766432 | + | NZ_CP030050.1 | Bradyrhizobium arachidis |
| 13 | 7060004 | 7060279 | - | NZ_LS398110.1 | Bradyrhizobium vignae |
| 14 | 2200018 | 2200293 | + | NZ_CP022221.1 | Bradyrhizobium zhanjiangense |
| 15 | 321292 | 321567 | - | NZ_CP022220.1 | Bradyrhizobium guangxiense |
| 16 | 113641 | 113916 | - | NZ_CP030054.1 | Bradyrhizobium guangzhouense |
| 17 | 913337 | 913612 | - | NZ_CP030052.1 | Bradyrhizobium guangdongense |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_CP029453.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF01312.21 | 1.0 | 17 | 829 | same-strand | FlhB HrpN YscU SpaS Family |
| 2 | PF01311.22 | 1.0 | 17 | 11 | same-strand | Bacterial export proteins, family 1 |
| 3 | PF00813.22 | 1.0 | 17 | 3 | same-strand | FliP family |
| 4 | PF01052.22 | 1.0 | 17 | 661 | same-strand | Type III flagellar switch regulator (C-ring) FliN C-term |
| 5 | PF00006.27 | 0.94 | 16 | 2290.0 | same-strand | ATP synthase alpha/beta family, nucleotide-binding domain |
| 6 | PF18269.3 | 1.0 | 17 | 2290 | same-strand | T3SS EscN ATPase C-terminal domain |
| 7 | PF06635.14 | 0.94 | 16 | 3643.0 | same-strand | Nodulation protein NolV |
| 8 | PF02108.18 | 0.94 | 16 | 3643.0 | same-strand | Flagellar assembly protein FliH |
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