* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_CP029453.1
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF01609.23
|
1.0
|
2
|
1469.0
|
same-strand
|
Transposase DDE domain
|
2
|
PF13340.8
|
1.0
|
2
|
1469.0
|
same-strand
|
Putative transposase of IS4/5 family (DUF4096)
|
3
|
PF13586.8
|
1.0
|
2
|
1469.0
|
same-strand
|
Transposase DDE domain
|
4
|
PF11089.10
|
1.0
|
2
|
52.0
|
same-strand
|
Exopolysaccharide production repressor
|
5
|
PF05082.15
|
1.0
|
2
|
-3.0
|
same-strand
|
Rop-like
|
6
|
PF03270.15
|
1.0
|
2
|
223.0
|
same-strand
|
Protein of unknown function, DUF269
|
7
|
PF00148.21
|
1.0
|
2
|
1782.5
|
same-strand
|
Nitrogenase component 1 type Oxidoreductase
|
8
|
PF11844.10
|
1.0
|
2
|
964.0
|
same-strand
|
Domain of unknown function (DUF3364)
|
9
|
PF00142.20
|
1.0
|
2
|
4211.5
|
same-strand
|
4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family
|
10
|
PF01656.25
|
1.0
|
2
|
4211.5
|
same-strand
|
CobQ/CobB/MinD/ParA nucleotide binding domain
|
++ More..