Result : P55599
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | Uncharacterized protein y4oN |
| NCBI Accession ID | U00090.2 |
| Organism | Sinorhizobium fredii (strain NBRC 101917 / NGR234) |
| Left | 289075 |
| Right | 289287 |
| Strand | + |
| Nucleotide Sequence | GTGCTGTCGACACGCAAACAGAACTGGGGCGAAGACCGCGTCATGTTTTACGACGCTCAAGGACGGTTGCGTTCGCTGCCGGCCTCGTGGACCGATGTTAATGAGGCCGACTTGTTCAGTCAGGTTGCTGCAGGTCGGTCCTTCTCCCGCCCAGACGATCTGTCGGCGCTGGCGTCGTTGATCGATCGCATTAAGCGCCGTCAGGAAGAGTGA |
| Sequence | MLSTRKQNWGEDRVMFYDAQGRLRSLPASWTDVNEADLFSQVAAGRSFSRPDDLSALASLIDRIKRRQEE |
| Source of smORF | Swiss-Prot |
| Function | The ORF matches to the profile of pfam17342. Profile Description: Family of unknown function (DUF5372). This family of unknown function is found in Bacteria. |
| Pubmed ID | 9163424 19376903 |
| Domain | CDD:407445 |
| Functional Category | Others |
| Uniprot ID | P55599 |
| ORF Length (Amino Acid) | 70 |
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| Conservation Analysis |
No. of Species: 9
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 424773 | 424943 | + | NC_020527.1 | Sinorhizobium meliloti 2011 |
| 2 | 676472 | 676642 | - | NC_020528.1 | Sinorhizobium meliloti 2011 |
| 3 | 386432 | 386644 | - | NZ_CP029453.1 | Sinorhizobium fredii CCBAU 25509 |
| 4 | 395222 | 395434 | - | NZ_CP023069.1 | Ensifer sojae CCBAU 05684 |
| 5 | 1192936 | 1193109 | + | NC_011761.1 | Acidithiobacillus ferrooxidans ATCC 23270 |
| 6 | 444206 | 444379 | - | NC_010627.1 | Paraburkholderia phymatum STM815 |
| 7 | 205716 | 205889 | + | NC_010627.1 | Paraburkholderia phymatum STM815 |
| 8 | 398241 | 398414 | + | NC_010627.1 | Paraburkholderia phymatum STM815 |
| 9 | 1927323 | 1927496 | - | NC_010623.1 | Paraburkholderia phymatum STM815 |
| 10 | 1983726 | 1983899 | - | NC_010623.1 | Paraburkholderia phymatum STM815 |
| 11 | 1601084 | 1601257 | - | NC_010625.1 | Paraburkholderia phymatum STM815 |
| 12 | 2649488 | 2649661 | - | NZ_CP015959.1 | Paraburkholderia caribensis |
| 13 | 134515 | 134697 | + | NZ_CP050297.1 | Mesorhizobium huakuii |
| 14 | 181806 | 181988 | + | NZ_CP050297.1 | Mesorhizobium huakuii |
| 15 | 1465141 | 1465323 | + | NC_010170.1 | Bordetella petrii |
| 16 | 1002253 | 1002447 | + | NC_022663.1 | Mycobacterium kansasii ATCC 12478 |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_020527.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF00239.23 | 0.78 | 7 | 912.0 | same-strand | Resolvase, N terminal domain |
| 2 | PF07508.15 | 0.78 | 7 | 912 | same-strand | Recombinase |
| 3 | PF13408.8 | 0.78 | 7 | 912 | same-strand | Recombinase zinc beta ribbon domain |
| 4 | PF00665.28 | 0.78 | 7 | 2865 | opposite-strand | Integrase core domain |
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