Result : P55534
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | Putative toxin Y4kP |
| NCBI Accession ID | U00090.2 |
| Organism | Sinorhizobium fredii (strain NBRC 101917 / NGR234) |
| Left | 368592 |
| Right | 368882 |
| Strand | - |
| Nucleotide Sequence | ATGAGTCGGAAGCGTATTCGTTGGACGCTGCGGGCGTTGCGGCGACTTGATGAGATCGGCGCGTATATCGAGAAAGACGATCCGGATGCGGCCGCTCGCGTCGTGGCGCGGATTGGCACTGCCGTGGATGCGTTAGCGGAGTACCCTGCCAGTGGGCGGCCTGGTCGTATCAAGAGCACGCGCGAGCTCGTGCTGGCCGACATTCCCTACATCATTCCCTACCGCATAAGTCGAGACGTCGAGATCCTCACCGTCATGCACGCTCACCAGCAATGGCCGCAGGTTCTCTAG |
| Sequence | MSRKRIRWTLRALRRLDEIGAYIEKDDPDAAARVVARIGTAVDALAEYPASGRPGRIKSTRELVLADIPYIIPYRISRDVEILTVMHAHQQWPQVL |
| Source of smORF | Swiss-Prot |
| Function | Toxic component of a type II toxin-antitoxin (TA) system. {ECO:0000250}. |
| Pubmed ID | 9163424 19376903 |
| Domain | CDD:419697 |
| Functional Category | Toxin_type_2 |
| Uniprot ID | P55534 |
| ORF Length (Amino Acid) | 96 |
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| Conservation Analysis |
No. of Species: 9
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 3283749 | 3284039 | - | NZ_CP006877.1 | Rhizobium gallicum bv. gallicum R602sp |
| 2 | 125766 | 126059 | + | NZ_CP050299.1 | Mesorhizobium huakuii |
| 3 | 212125 | 212415 | - | NC_020062.1 | Rhizobium tropici CIAT 899 |
| 4 | 214889 | 215179 | + | NZ_CP048632.1 | Rhizobium oryzihabitans |
| 5 | 68235 | 68525 | - | NZ_CP071606.1 | Rhizobium binae |
| 6 | 1972828 | 1973121 | + | NC_002678.2 | Mesorhizobium japonicum MAFF 303099 |
| 7 | 1557849 | 1558145 | - | NZ_CP034910.1 | Ensifer alkalisoli |
| 8 | 1129270 | 1129566 | - | NZ_CP034910.1 | Ensifer alkalisoli |
| 9 | 2550099 | 2550356 | + | NZ_CP049241.1 | Rhizobium pseudoryzae |
| 10 | 4887590 | 4887877 | - | NZ_CP043538.1 | Methylobacterium mesophilicum SR1.6/6 |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_CP006877.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF01402.23 | 0.89 | 8 | -3 | same-strand | Ribbon-helix-helix protein, copG family |
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