Result : P55510
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | Putative plasmid stability protein y4jJ |
| NCBI Accession ID | U00090.2 |
| Organism | Sinorhizobium fredii (strain NBRC 101917 / NGR234) |
| Left | 394797 |
| Right | 395054 |
| Strand | - |
| Nucleotide Sequence | ATGGCAAATGTGACCGTTAGGAACCTACCCGACGAGGTGCACCGAGCGCTACGCGTACGAGCAGCAATGCATGGCCGCAGCACCGAAGCCGAGATCCGCGACATCCTAGAAACGACTGTCCGGCCCCCGGAGCGGGTCAAACTCGGCTCTTTATTGGCGTCTATTGCCCATGAAGCTGGAGGGCTGACGGATGCCGAAGCGGAGCATTTCAACCAGCTCCGTGACAAGACTCCTGCTGAACCGATGAGCTTCGAATGA |
| Sequence | MANVTVRNLPDEVHRALRVRAAMHGRSTEAEIRDILETTVRPPERVKLGSLLASIAHEAGGLTDAEAEHFNQLRDKTPAEPMSFE |
| Source of smORF | Swiss-Prot |
| Function | Involved in plasmid stability. {ECO:0000305}. |
| Pubmed ID | 9163424 19376903 |
| Domain | |
| Functional Category | Others |
| Uniprot ID | P55510 |
| ORF Length (Amino Acid) | 85 |
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| Conservation Analysis |
No. of Species: 95
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 8108 | 8365 | - | NZ_CP004389.1 | Thalassospira xiamenensis M-5 = DSM 17429 |
| 2 | 1712127 | 1712384 | - | NZ_AP014568.1 | Serpentinomonas raichei |
| 3 | 898900 | 899157 | - | NZ_CP032695.1 | Rhizobium jaguaris |
| 4 | 3842887 | 3843144 | - | NC_008786.1 | Verminephrobacter eiseniae EF01-2 |
| 5 | 4160527 | 4160781 | - | NC_008786.1 | Verminephrobacter eiseniae EF01-2 |
| 6 | 2506900 | 2507157 | + | NZ_CP017476.1 | Hydrogenophaga crassostreae |
| 7 | 3467496 | 3467753 | - | NC_017964.1 | Advenella kashmirensis WT001 |
| 8 | 1301078 | 1301332 | + | NZ_AP018795.1 | Acidithiobacillus ferridurans |
| 9 | 272715 | 272969 | + | NZ_CP071679.1 | Rhizobium ruizarguesonis |
| 10 | 1460556 | 1460813 | - | NZ_CP028339.1 | Thauera aromatica K172 |
| 11 | 731812 | 732069 | + | NZ_CP039546.1 | Methylorubrum populi |
| 12 | 174902 | 175156 | - | NZ_CP025682.1 | Azoarcus pumilus |
| 13 | 18874 | 19131 | - | NC_004632.1 | Pseudomonas syringae pv. tomato str. DC3000 |
| 14 | 199514 | 199753 | + | NZ_AP021881.1 | Sulfuriferula nivalis |
| 15 | 3376525 | 3376779 | - | NZ_CP011257.1 | Ralstonia mannitolilytica |
| 16 | 2091960 | 2092217 | + | NZ_CP045571.1 | Acidithiobacillus thiooxidans ATCC 19377 |
| 17 | 1754874 | 1755131 | + | NZ_CP019240.1 | Rhodoferax antarcticus |
| 18 | 1437293 | 1437547 | - | NZ_CP023068.1 | Ensifer sojae CCBAU 05684 |
| 19 | 294735 | 294974 | - | NZ_CP011808.2 | Pandoraea faecigallinarum |
| 20 | 394536 | 394790 | + | NZ_CP006880.1 | Rhizobium gallicum bv. gallicum R602sp |
| 21 | 3586292 | 3586546 | + | NC_019973.1 | Mesorhizobium australicum WSM2073 |
| 22 | 2564768 | 2565022 | - | NZ_CP012621.1 | Zobellella denitrificans |
| 23 | 2547175 | 2547429 | - | NZ_CP012621.1 | Zobellella denitrificans |
| 24 | 359489 | 359728 | + | NZ_CP045236.1 | Burkholderia cepacia |
| 25 | 1864946 | 1865200 | - | NZ_CP004393.1 | Celeribacter indicus |
| 26 | 1798469 | 1798723 | - | NZ_CP004393.1 | Celeribacter indicus |
| 27 | 214683 | 214937 | + | NZ_CP029452.1 | Sinorhizobium fredii CCBAU 25509 |
| 28 | 1992106 | 1992360 | + | NC_006513.1 | Aromatoleum aromaticum EbN1 |
| 29 | 10004 | 10255 | + | NZ_CP050141.1 | Komagataeibacter rhaeticus |
| 30 | 410296 | 410547 | + | NZ_CP050139.1 | Komagataeibacter rhaeticus |
| 31 | 2035651 | 2035890 | - | NZ_CP013416.1 | Burkholderia ubonensis |
| 32 | 2045318 | 2045557 | - | NZ_CP013403.1 | Burkholderia metallica |
| 33 | 2646204 | 2646455 | - | NC_014315.1 | Nitrosococcus watsonii C-113 |
| 34 | 2516674 | 2516928 | - | NZ_CP045434.1 | Sphingomonas ginsengisoli An et al. 2013 |
| 35 | 2026206 | 2026460 | + | NZ_CP048812.1 | Halomonas socia |
| 36 | 333495 | 333749 | - | NZ_CP020909.1 | Rhizobium etli |
| 37 | 229853 | 230107 | + | NZ_CP071456.1 | Rhizobium lentis |
| 38 | 2122676 | 2122915 | + | NZ_CP011504.1 | Burkholderia pyrrocinia |
| 39 | 3561971 | 3562210 | - | NC_005126.1 | Photorhabdus laumondii subsp. laumondii TTO1 |
| 40 | 4536592 | 4536846 | - | NZ_CP060783.1 | Diaphorobacter aerolatus |
| 41 | 1975773 | 1976027 | - | NZ_CP013110.1 | Sinorhizobium americanum |
| 42 | 2570187 | 2570441 | - | NZ_CP017415.1 | Acidihalobacter yilgarnenesis |
| 43 | 350500 | 350754 | + | NZ_CP015882.1 | Ensifer adhaerens |
| 44 | 851138 | 851392 | - | NZ_CP041730.1 | Chitinimonas arctica |
| 45 | 2367114 | 2367353 | - | NZ_CP020738.1 | Paraburkholderia acidophila |
| 46 | 2503727 | 2503981 | + | NZ_CP011930.1 | Herbaspirillum seropedicae |
| 47 | 832207 | 832461 | + | NZ_CP028901.1 | Algicoccus marinus |
| 48 | 6303182 | 6303436 | - | NZ_CP041695.1 | Nocardia otitidiscaviarum |
| 49 | 1006769 | 1007008 | + | NC_007511.1 | Burkholderia lata |
| 50 | 2343209 | 2343463 | + | NZ_CP028127.1 | Xanthomonas vasicola pv. vasculorum |
| 51 | 2355701 | 2355955 | - | NZ_HG916765.1 | Castellaniella defragrans 65Phen |
| 52 | 407805 | 408059 | - | NZ_CP018839.1 | Thauera chlorobenzoica |
| 53 | 3558209 | 3558463 | - | NZ_CP007029.1 | Thioalkalivibrio paradoxus ARh 1 |
| 54 | 17405 | 17656 | + | NZ_CP042811.1 | Acetobacter oryzoeni |
| 55 | 2398940 | 2399194 | - | NC_015942.1 | Acidithiobacillus ferrivorans SS3 |
| 56 | 4276381 | 4276635 | + | NC_009511.1 | Sphingomonas wittichii RW1 |
| 57 | 1314816 | 1315070 | + | NZ_CP013236.1 | Collimonas pratensis |
| 58 | 4851822 | 4852076 | - | NC_010524.1 | Leptothrix cholodnii SP-6 |
| 59 | 2126858 | 2127097 | - | NZ_CP013400.1 | Burkholderia seminalis |
| 60 | 2895123 | 2895374 | + | NZ_CP043929.1 | Methylomonas rhizoryzae |
| 61 | 4549253 | 4549507 | + | NZ_CP009533.1 | Pseudomonas rhizosphaerae |
| 62 | 3698121 | 3698375 | - | NZ_AP019700.1 | Stella humosa |
| 63 | 1734276 | 1734515 | + | NZ_CP013341.1 | Nitrosomonas ureae |
| 64 | 1708400 | 1708639 | + | NZ_CP013341.1 | Nitrosomonas ureae |
| 65 | 1544009 | 1544263 | + | NC_011761.1 | Acidithiobacillus ferrooxidans ATCC 23270 |
| 66 | 20857 | 21108 | + | NZ_CP049249.1 | Rhizobium rhizoryzae |
| 67 | 5759047 | 5759298 | - | NZ_LR134302.1 | Achromobacter spanius |
| 68 | 4997 | 5251 | - | NC_008761.1 | Polaromonas naphthalenivorans CJ2 |
| 69 | 1345441 | 1345695 | - | NC_009719.1 | Parvibaculum lavamentivorans DS-1 |
| 70 | 3771873 | 3772127 | + | NC_009719.1 | Parvibaculum lavamentivorans DS-1 |
| 71 | 2069121 | 2069375 | + | NZ_LT853882.1 | Xanthomonas fragariae |
| 72 | 2709568 | 2709822 | + | NZ_CP023449.1 | Rhizorhabdus dicambivorans |
| 73 | 4389375 | 4389629 | - | NC_009937.1 | Azorhizobium caulinodans ORS 571 |
| 74 | 2075582 | 2075821 | - | NZ_CP013452.1 | Burkholderia cenocepacia |
| 75 | 756155 | 756409 | + | NZ_CP048630.1 | Ancylobacter pratisalsi |
| 76 | 1178213 | 1178467 | - | NZ_CP051461.1 | Polaromonas vacuolata |
| 77 | 3139560 | 3139814 | - | NZ_CP050296.1 | Mesorhizobium huakuii |
| 78 | 3657429 | 3657668 | - | NZ_CP003915.1 | Advenella mimigardefordensis DPN7 |
| 79 | 2460153 | 2460383 | - | NZ_CP003915.1 | Advenella mimigardefordensis DPN7 |
| 80 | 561229 | 561483 | + | NZ_CP029176.1 | Acidibrevibacterium fodinaquatile |
| 81 | 799699 | 799953 | + | NZ_CP039288.1 | Cupriavidus necator H16 |
| 82 | 8469993 | 8470247 | + | NZ_CP042997.1 | Aquisphaera giovannonii |
| 83 | 1079879 | 1080133 | - | NZ_LR134378.1 | Lautropia mirabilis |
| 84 | 110656 | 110910 | - | NZ_CP060037.1 | Sphingobium fuliginis |
| 85 | 1794539 | 1794793 | - | NZ_AP017655.1 | Sphingobium cloacae |
| 86 | 919822 | 920088 | + | NZ_CP029479.1 | Phenylobacterium parvum |
| 87 | 3705297 | 3705536 | - | NC_012560.1 | Azotobacter vinelandii DJ |
| 88 | 833481 | 833735 | - | NZ_AP018907.1 | Blastochloris tepida |
| 89 | 39917 | 40174 | - | NZ_AP023397.1 | Nocardia wallacei |
| 90 | 10348 | 10602 | + | NC_020453.1 | Bradyrhizobium oligotrophicum S58 |
| 91 | 815189 | 815428 | - | NZ_AP019378.1 | Bordetella parapertussis |
| 92 | 2248722 | 2248961 | - | NZ_LR134326.1 | Bordetella bronchiseptica |
| 93 | 3225097 | 3225336 | - | NZ_AP014946.1 | Variibacter gotjawalensis |
| 94 | 326881 | 327135 | - | NZ_CP054022.1 | Rhizobium indicum |
| 95 | 5731100 | 5731354 | + | NZ_CP030053.1 | Bradyrhizobium guangzhouense |
| 96 | 5725565 | 5725810 | - | NZ_CP030053.1 | Bradyrhizobium guangzhouense |
| 97 | 5247505 | 5247759 | - | NZ_CP059082.1 | Halomonas titanicae |
| 98 | 1016646 | 1016897 | + | NZ_AP018724.1 | Sulfurivermis fontis |
| 99 | 2395339 | 2395572 | + | NZ_CP019239.1 | Rhodoferax saidenbachensis |
| 100 | 2994500 | 2994742 | + | NC_014217.1 | Starkeya novella DSM 506 |
| 101 | 442054 | 442275 | - | NZ_AP019755.1 | Nitrosomonas stercoris |
| 102 | 5638451 | 5638690 | + | NC_016631.1 | Granulicella mallensis MP5ACTX8 |
| 103 | 1912401 | 1912634 | + | NC_015677.1 | Ramlibacter tataouinensis TTB310 |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_CP004389.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF01850.23 | 0.94 | 89 | -3 | same-strand | PIN domain |
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