* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_CP029453.1
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF00148.21
|
1.0
|
2
|
4923.5
|
opposite-strand
|
Nitrogenase component 1 type Oxidoreductase
|
2
|
PF00142.20
|
1.0
|
2
|
3937.0
|
opposite-strand
|
4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family
|
3
|
PF01656.25
|
1.0
|
2
|
3937.0
|
opposite-strand
|
CobQ/CobB/MinD/ParA nucleotide binding domain
|
4
|
PF13610.8
|
1.0
|
2
|
1686.0
|
both-strands
|
DDE domain
|
5
|
PF01381.24
|
1.0
|
2
|
1605.0
|
same-strand
|
Helix-turn-helix
|
6
|
PF13560.8
|
1.0
|
2
|
1605.0
|
same-strand
|
Helix-turn-helix domain
|
7
|
PF12844.9
|
1.0
|
2
|
1605.0
|
same-strand
|
Helix-turn-helix domain
|
8
|
PF07804.14
|
1.0
|
2
|
383.0
|
same-strand
|
HipA-like C-terminal domain
|
9
|
PF13657.8
|
1.0
|
2
|
383.0
|
same-strand
|
HipA N-terminal domain
|
++ More..