* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_015258.1
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF03743.16
|
1.0
|
2
|
3240.5
|
same-strand
|
Bacterial conjugation TrbI-like protein
|
2
|
PF03524.17
|
1.0
|
2
|
1891.0
|
same-strand
|
Conjugal transfer protein
|
3
|
PF04335.15
|
1.0
|
2
|
1206.5
|
same-strand
|
VirB8 protein
|
4
|
PF04610.16
|
1.0
|
2
|
-6.0
|
same-strand
|
TrbL/VirB6 plasmid conjugal transfer protein
|
5
|
PF03135.16
|
1.0
|
2
|
778.0
|
same-strand
|
CagE, TrbE, VirB family, component of type IV transporter system
|
6
|
PF05101.15
|
1.0
|
2
|
3256.0
|
same-strand
|
Type IV secretory pathway, VirB3-like protein
|
7
|
PF04956.15
|
1.0
|
2
|
3548.0
|
same-strand
|
TrbC/VIRB2 pilin
|
8
|
PF00437.22
|
1.0
|
2
|
3942.0
|
same-strand
|
Type II/IV secretion system protein
|
++ More..