ProsmORF-pred
Result : A5FZU7
Protein Information
Information Type Description
Protein name 50S ribosomal protein L30
NCBI Accession ID CP000697.1
Organism Acidiphilium cryptum (strain JF-5)
Left 2124030
Right 2124224
Strand -
Nucleotide Sequence ATGTCTGAGCAGGTGAAGCGGGTGCGCGTCACCCAGGTCGGATCGCCGATCGGCCGCAAGCCGGGCCAGAAGGAGACCCTGATCGGTCTCGGCCTGCACCGGATGAACGCGAGCCGTGAACTCGCCGCCACCCCGGAAACGCTCGGCCGCATCCGCAAGGTCAAGCATCTCCTGAAGGTCGAGGAGCTGTCGTAA
Sequence MSEQVKRVRVTQVGSPIGRKPGQKETLIGLGLHRMNASRELAATPETLGRIRKVKHLLKVEELS
Source of smORF Swiss-Prot
Function The ORF matches to the profile of cl00203. Profile Description: N/A. This family includes prokaryotic L30 and eukaryotic L7.
Pubmed ID
Domain CDD:412218
Functional Category Ribosomal_protein
Uniprot ID A5FZU7
ORF Length (Amino Acid) 64
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Conservation Analysis
Conservation Analysis
No. of Species: 205
Sr.No. Left Position Right Position Strand NCBI Accession id Species Name
1 2404467 2404661 - NC_015186.1 Acidiphilium multivorum AIU301
2 2595213 2595404 - NZ_CP044117.1 Roseomonas mucosa
3 1082059 1082232 - NZ_CP053923.1 Defluviicoccus vanus
4 354672 354860 - NZ_CP032485.1 Neokomagataea tanensis
5 1156904 1157104 + NZ_CP029176.1 Acidibrevibacterium fodinaquatile
6 407682 407870 - NZ_CP038141.1 Swingsia samuiensis
7 3274572 3274760 - NZ_CP041025.1 Paremcibacter congregatus
8 3099426 3099617 - NC_017584.1 Rhodospirillum rubrum F11
9 1357344 1357532 - NZ_CP036404.1 Komagataeibacter saccharivorans
10 984090 984281 + NZ_CP040517.1 Luteithermobacter gelatinilyticus
11 1750523 1750711 - NZ_CP014681.1 Kozakia baliensis
12 1203486 1203665 + NZ_CP015772.1 Niabella ginsenosidivorans
13 1937053 1937235 + NZ_CP037755.1 Pseudocnuella soli
14 1516270 1516461 + NC_017059.1 Pararhodospirillum photometricum DSM 122
15 1311757 1311951 + NZ_CP024199.1 Thalassospira marina
16 526885 527061 + NC_006526.2 Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821
17 668163 668354 - NZ_CP041659.1 Sphingomonas xanthus
18 459660 459848 - NZ_CP068419.1 Gluconobacter sphaericus
19 2894237 2894431 - NC_017956.1 Tistrella mobilis KA081020-065
20 1845206 1845385 - NC_016940.1 Saprospira grandis str. Lewin
21 282737 282925 - NZ_CP043043.1 Gluconobacter thailandicus
22 2441068 2441253 - NZ_CP042433.1 Flavisolibacter ginsenosidimutans
23 1677833 1677994 + NZ_CP023449.1 Rhizorhabdus dicambivorans
24 1950861 1951049 - NZ_CP014689.1 Gluconobacter albidus
25 1022504 1022692 - NZ_CP019875.1 Komagataeibacter nataicola
26 3266928 3267095 + NZ_CP025611.1 Niveispirillum cyanobacteriorum
27 52852 53037 + NC_023065.1 Magnetospirillum gryphiswaldense MSR-1 v2
28 411254 411442 - NZ_CP004373.1 Gluconobacter oxydans DSM 3504
29 1492385 1492570 - NC_009511.1 Sphingomonas wittichii RW1
30 1311735 1311929 + NZ_CP004388.1 Thalassospira xiamenensis M-5 = DSM 17429
31 1907470 1907664 + NZ_CP031555.1 Thalassospira indica
32 404554 404721 + NZ_CP030126.1 Indioceanicola profundi
33 2472046 2472237 - NZ_CP054619.1 Azospirillum oryzae
34 5806954 5807136 - NC_016609.1 Niastella koreensis GR20-10
35 2440447 2440635 - NZ_CP050139.1 Komagataeibacter rhaeticus
36 821223 821408 + NZ_AP014690.1 Asaia bogorensis NBRC 16594
37 1210583 1210771 - NC_016027.1 Komagataeibacter medellinensis NBRC 3288
38 3190532 3190702 - NZ_CP042906.1 Hypericibacter terrae
39 188018 188200 + NZ_AP017422.1 Filimonas lacunae
40 157505 157690 - NZ_LN606600.1 Acetobacter senegalensis
41 654449 654607 + NZ_CP003182.2 Granulibacter bethesdensis CGDNIH4
42 3089828 3090031 - NZ_CP061038.1 Sphingomonas alpina
43 1652466 1652642 - NZ_CP060717.1 Sphingomonas rhizophila
44 2097090 2097251 + NZ_CP042582.1 Hypericibacter adhaerens
45 1199599 1199787 + NZ_CP062147.1 Komagataeibacter hansenii
46 4882061 4882237 - NZ_CP014168.1 Sphingomonas panacis
47 308822 309013 - NZ_CP012401.1 Azospirillum thiophilum
48 3368301 3368504 - NC_007626.1 Magnetospirillum magneticum AMB-1
49 1249918 1250085 + NZ_CP030265.1 Skermanella pratensis
50 1841510 1841695 - NZ_CP007035.1 Niabella soli DSM 19437
51 917726 917905 + NZ_AP019700.1 Stella humosa
52 3062832 3063005 + NZ_CP051131.1 Parasphingopyxis algicola
53 363022 363213 + NZ_CP029829.1 Azospirillum ramasamyi
54 178381 178572 - NZ_CP014525.1 Haematospirillum jordaniae
55 2019983 2020174 + NZ_CP061205.1 Kordiimonas pumila
56 1156516 1156722 + NZ_CP053708.1 Lichenicola cladoniae
57 1145120 1145317 - NC_007940.1 Rickettsia bellii RML369-C
58 1084251 1084448 + NZ_CP018099.1 Caldithrix abyssi DSM 13497
59 3267572 3267748 + NZ_CP018221.1 Tardibacter chloracetimidivorans
60 1370836 1371000 - NZ_CP042304.1 Devosia ginsengisoli
61 1996729 1996920 - NZ_CP022110.1 Nitrospirillum amazonense CBAmc
62 542823 543008 + NZ_CP015164.1 Acetobacter ascendens
63 890420 890605 + NZ_CP042808.1 Acetobacter oryzoeni
64 2515602 2515787 + NC_021991.1 Acetobacter pasteurianus 386B
65 1020434 1020619 + NZ_CP022374.1 Acetobacter oryzifermentans
66 1178911 1179087 - NZ_CP045434.1 Sphingomonas ginsengisoli An et al. 2013
67 2131794 2131961 - NC_016026.1 Micavibrio aeruginosavorus ARL-13
68 928538 928729 + NZ_CP029353.1 Azospirillum thermophilum
69 3742875 3743054 - NZ_CP032489.1 Arachidicoccus soli
70 2656666 2656845 + NZ_CP042434.1 Arachidicoccus ginsenosidivorans
71 2028085 2028264 - NZ_CP030041.1 Echinicola strongylocentroti
72 250649 250828 - NC_019904.1 Echinicola vietnamensis DSM 17526
73 248192 248371 - NZ_CP040106.1 Echinicola rosea
74 73291 73473 + NZ_CP018155.1 Tenacibaculum todarodis
75 3546874 3547062 - NZ_CP048815.1 Caulobacter rhizosphaerae
76 5873217 5873393 + NZ_CP048113.1 Chitinophaga agri
77 1728720 1728902 - NZ_CP061813.1 Polaribacter haliotis
78 1973650 1973835 + NC_013132.1 Chitinophaga pinensis DSM 2588
79 335282 335464 - NZ_CP019419.1 Polaribacter reichenbachii
80 3587659 3587841 + NZ_CP017477.1 Polaribacter vadi
81 1338652 1338837 + NZ_CP013002.1 Caulobacter henricii
82 1139578 1139754 + NZ_CP042306.1 Sphingomonas panacisoli
83 1011565 1011723 - NZ_CP046908.1 Stappia indica
84 3655588 3655752 - NZ_AP014946.1 Variibacter gotjawalensis
85 462152 462340 + NZ_CP033040.1 Thiomicrorhabdus indica
86 1633741 1633920 - NZ_LR134404.1 Weeksella virosa
87 3134440 3134619 + NZ_CP034759.1 Litorilituus sediminis
88 1827911 1828090 + NC_018010.1 Belliella baltica DSM 15883
89 274224 274385 + NZ_CP071325.1 Photobacterium ganghwense
90 2955479 2955646 + NC_009719.1 Parvibaculum lavamentivorans DS-1
91 5201302 5201487 - NC_010170.1 Bordetella petrii
92 3802141 3802299 - NZ_LT899436.1 Tenacibaculum jejuense
93 1275373 1275585 + NZ_HG938353.1 Neorhizobium galegae bv. orientalis str. HAMBI 540
94 2863725 2863922 - NZ_CP049250.1 Rhizobium rhizoryzae
95 1171823 1172026 + NZ_CP015880.1 Ensifer adhaerens
96 6329835 6329999 - NZ_CP038034.1 Achromobacter insolitus
97 2935636 2935812 - NZ_LT960611.1 Vibrio tapetis subsp. tapetis
98 2343246 2343437 - NC_010505.1 Methylobacterium radiotolerans JCM 2831
99 614769 614948 + NZ_CP005974.1 Photobacterium gaetbulicola Gung47
100 2442555 2442719 - NZ_LR134302.1 Achromobacter spanius
101 4898581 4898745 - NZ_CP053986.1 Achromobacter denitrificans
102 619094 619273 + NC_003910.7 Colwellia psychrerythraea 34H
103 1450196 1450396 - NZ_CP054836.1 Oricola thermophila
104 1110317 1110520 + NZ_CP034909.1 Ensifer alkalisoli
105 1508503 1508706 + NZ_CP013107.1 Sinorhizobium americanum
106 2473103 2473261 + NZ_CP013119.1 Alcaligenes faecalis
107 1911496 1911675 - NC_015703.1 Runella slithyformis DSM 19594
108 4307307 4307483 - NZ_CP006644.1 Sphingomonas sanxanigenens DSM 19645 = NX02
109 408612 408788 + NZ_CP046268.1 Vibrio spartinae
110 584037 584222 + NZ_CP068345.1 Succinivibrio dextrinosolvens
111 1757474 1757662 + NZ_CP053086.1 Pelagibacterium halotolerans
112 332734 332916 + NZ_AP018786.1 Sutterella megalosphaeroides
113 4817693 4817884 + NZ_CP043538.1 Methylobacterium mesophilicum SR1.6/6
114 413013 413189 + NZ_CP044069.1 Vibrio vulnificus
115 1575162 1575347 - NZ_CP021060.1 Taylorella equigenitalis
116 2741060 2741239 - NZ_CP041345.1 Tenuifilum thalassicum
117 370399 370587 + NZ_CP040602.1 Thiomicrorhabdus sediminis
118 497715 497894 + NZ_CP017689.1 Thalassotalea crassostreae
119 453711 453899 + NZ_CP035033.1 Hydrogenovibrio thermophilus
120 1694455 1694637 - NZ_CP040812.1 Antarcticibacterium flavum
121 1989611 1989769 + NZ_CP022387.1 Capnocytophaga stomatis
122 2111969 2112127 + NZ_CP022389.1 Capnocytophaga canimorsus
123 2212918 2213082 - NC_012982.1 Hirschia baltica ATCC 49814
124 94671 94850 + NZ_CP018804.1 Histophilus somni
125 1944838 1945020 + NZ_LT906449.1 Capnocytophaga haemolytica
126 1544015 1544200 - NC_016043.1 Taylorella asinigenitalis MCE3
127 3016441 3016626 + NZ_CP022987.1 Pusillimonas thiosulfatoxidans
128 2454069 2454230 + NZ_CP072133.1 Pseudoalteromonas xiamenensis
129 515011 515190 + NZ_LR134167.1 Avibacterium volantium
130 2327527 2327688 + NZ_CP041660.1 Catenovulum sediminis
131 1291727 1291924 - NZ_CP022604.1 [Ochrobactrum] quorumnocens
132 1920675 1920875 - NZ_CP017940.1 Phyllobacterium zundukense
133 1530000 1530212 + NC_020059.1 Rhizobium tropici CIAT 899
134 1788632 1788844 + NZ_CP032694.1 Rhizobium jaguaris
135 113452 113631 + NZ_CP011039.1 Pseudoalteromonas spongiae UST010723-006
136 832025 832204 + NZ_CP009888.1 Pseudoalteromonas piratica
137 387173 387361 + NZ_AP020335.1 Hydrogenovibrio marinus
138 2903814 2903975 - NZ_CP028339.1 Thauera aromatica K172
139 1900262 1900423 + NZ_CP018839.1 Thauera chlorobenzoica
140 996273 996452 - NZ_CP072425.1 Pseudoalteromonas viridis
141 2624950 2625159 - NZ_CP054027.1 Rhizobium hidalgonense
142 1269202 1269390 - NZ_LT821227.1 Phoenicibacter congonensis
143 2712890 2713066 - NZ_AP019651.1 Vibrio taketomensis
144 2849354 2849530 - NZ_CP032093.1 Vibrio alfacsensis
145 3100348 3100524 + NZ_CP014035.2 Vibrio fluvialis
146 2698216 2698392 - NZ_CP016414.1 Vibrio scophthalmi
147 3188309 3188485 + NZ_AP019657.1 Vibrio ponticus
148 2615975 2616151 - NZ_CP009977.1 Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759
149 284313 284489 + NZ_CP030788.1 Vibrio campbellii
150 117310 117486 - NZ_CP040990.1 Vibrio furnissii
151 2992097 2992273 - NZ_CP031781.1 Vibrio parahaemolyticus
152 2818486 2818662 - NZ_CP018312.1 Vibrio rotiferianus
153 1539795 1539971 - NZ_CP019959.1 Vibrio owensii
154 1952275 1952451 - NZ_CP025792.1 Vibrio jasicida 090810c
155 1813366 1813527 + NZ_CP047045.1 Terricaulis silvestris
156 2060466 2060648 + NZ_CP022379.1 Capnocytophaga sputigena
157 3308328 3308510 - NZ_CP022022.1 Capnocytophaga endodontalis
158 3276868 3277050 + NZ_CP017478.1 Urechidicola croceus
159 52999 53190 - NZ_CP060244.1 Entomobacter blattae
160 120955 121131 - NC_013456.1 Vibrio antiquarius
161 2544849 2545040 - NC_002977.6 Methylococcus capsulatus str. Bath
162 788067 788225 - NZ_CP022378.1 Capnocytophaga cynodegmi
163 2454252 2454413 - NZ_CP014646.1 Thauera humireducens
164 492014 492190 + NZ_CP009467.1 Vibrio harveyi
165 751758 751937 + NZ_CP009788.1 Geobacter pickeringii
166 1487696 1487881 - NZ_CP012669.1 Altererythrobacter epoxidivorans
167 5840778 5840942 - NZ_CP043046.1 Pigmentiphaga aceris
168 4092837 4093031 - NZ_CP029553.1 Methylobacterium terrae
169 1379489 1379671 + NC_013162.1 Capnocytophaga ochracea DSM 7271
170 643235 643417 + NZ_CP025682.1 Azoarcus pumilus
171 240279 240461 + NZ_CP027523.1 Pseudoalteromonas carrageenovora
172 1558441 1558623 - NZ_CP019628.1 Pseudoalteromonas aliena
173 3597420 3597602 - NZ_CP011025.1 Pseudoalteromonas arctica A 37-1-2
174 3568047 3568223 + NZ_CP031961.1 Pseudoalteromonas tunicata
175 3353429 3353611 - NZ_CP033065.1 Pseudoalteromonas agarivorans
176 3411257 3411439 - NZ_CP023464.1 Pseudoalteromonas atlantica
177 2458064 2458240 - NZ_CP022741.1 Vibrio qinghaiensis
178 348652 348834 + NZ_CP032090.1 Pseudoalteromonas donghaensis
179 3120659 3120841 - NZ_CP011041.1 Pseudoalteromonas tetraodonis
180 3156207 3156389 - NZ_CP011030.1 Pseudoalteromonas issachenkonii
181 1907888 1908085 - NZ_AP018907.1 Blastochloris tepida
182 3452174 3452356 - NZ_CP011028.1 Pseudoalteromonas espejiana DSM 9414
183 2989829 2990011 - NC_007481.1 Pseudoalteromonas translucida
184 3286281 3286463 - NZ_CP011036.1 Pseudoalteromonas nigrifaciens
185 3599820 3599999 - NZ_CP013187.1 Pseudoalteromonas phenolica
186 307487 307669 + NZ_CP031416.1 Gallaecimonas mangrovi
187 438596 438778 + NZ_AP018558.1 Hydrogenophilus thermoluteolus
188 644026 644187 - NZ_CP048877.1 Thermosulfuriphilus ammonigenes
189 2055487 2055672 - NC_002932.3 Chlorobaculum tepidum TLS
190 2669728 2669913 - NZ_CP017305.1 Chlorobaculum limnaeum
191 1496709 1496888 + NC_014375.1 Brevundimonas subvibrioides ATCC 15264
192 2461745 2461915 + NZ_CP014671.1 Immundisolibacter cernigliae
193 1281434 1281601 + NC_009483.1 Geobacter uraniireducens Rf4
194 3585028 3585210 - NZ_CP040449.1 Aeromonas simiae
195 3091948 3092115 - NC_014958.1 Deinococcus maricopensis DSM 21211
196 3024299 3024487 - NZ_CP043420.1 Kushneria phosphatilytica
197 1019685 1019855 + NC_014364.1 Sediminispirochaeta smaragdinae DSM 11293
198 384563 384724 + NC_014207.1 Methylotenera versatilis 301
199 757842 758027 - NZ_CP021323.1 Kushneria konosiri
200 3267450 3267641 + NZ_CP019948.1 Methylocystis bryophila
201 2541472 2541657 + NZ_CP021358.1 Kushneria marisflavi
202 241291 241470 + NZ_CP028897.1 Dongshaea marina
203 1956883 1957044 - NC_008025.1 Deinococcus geothermalis DSM 11300
204 383938 384135 + NC_012968.1 Methylotenera mobilis JLW8
205 5489451 5489636 - NC_013440.1 Haliangium ochraceum DSM 14365
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Neighborhood Conservation Analysis
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Conservation Analysis
Neighborhood Representative Chosen(Species): NC_015186.1
Sr.No. Domain Co-occurrence Frequency No. of species in which domain occurs with smORF Median distance b/w smORF and domain bearing ORFs Orientation relative to smORF PFAM Information
1 PF00411.21 0.67 137 2832 same-strand Ribosomal protein S11
2 PF00416.24 0.8 163 2408 same-strand Ribosomal protein S13/S18
3 PF00344.22 1.0 205 530.0 same-strand SecY
4 PF00828.21 0.99 203 10 same-strand Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A
5 PF00333.22 1.0 204 8.0 same-strand Ribosomal protein S5, N-terminal domain
6 PF03719.17 1.0 204 8.0 same-strand Ribosomal protein S5, C-terminal domain
7 PF00861.24 0.99 203 569 same-strand Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast
8 PF00347.25 1.0 205 943 same-strand Ribosomal protein L6
9 PF00410.21 1.0 205 1493 same-strand Ribosomal protein S8
10 PF00253.23 0.96 196 1912.0 same-strand Ribosomal protein S14p/S29e
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