Result : P54431
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | Uncharacterized protein YrkD |
| NCBI Accession ID | D84432.1 |
| Organism | Bacillus subtilis (strain 168) |
| Left | 5473 |
| Right | 5664 |
| Strand | + |
| Nucleotide Sequence | ATGATGGAACAAGGAAAAGATTGTAGAGAGGTTGTGACCCAATTAGCAGCTTCCCGTAATGCGATCGATCGAGCGATGGGTTTAATTGTGAGCACAAACCTTGAACATTGTGTTCGTGAAAGTTTAGAAAAAGGCGAAGACACACAAAATTTAGTAAAAGAAGCAGTCGACTTATTGGTAAAGAGCCGATAA |
| Sequence | MMEQGKDCREVVTQLAASRNAIDRAMGLIVSTNLEHCVRESLEKGEDTQNLVKEAVDLLVKSR |
| Source of smORF | Swiss-Prot |
| Function | |
| Pubmed ID | 8969508 9384377 |
| Domain | |
| Functional Category | Others |
| Uniprot ID | P54431 |
| ORF Length (Amino Acid) | 63 |
++ More..
| Conservation Analysis |
No. of Species: 135
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 2525471 | 2525662 | - | NZ_CP013984.1 | Bacillus inaquosorum |
| 2 | 2713949 | 2714140 | - | NC_000964.3 | Bacillus subtilis subsp. subtilis str. 168 |
| 3 | 530361 | 530552 | + | NZ_CP053376.1 | Bacillus amyloliquefaciens |
| 4 | 3415069 | 3415260 | - | NZ_CP011937.1 | Bacillus velezensis |
| 5 | 2457940 | 2458131 | - | NZ_CP051464.1 | Bacillus mojavensis |
| 6 | 724697 | 724888 | + | NZ_CP033052.1 | Bacillus vallismortis |
| 7 | 1412435 | 1412626 | - | NZ_CP017786.1 | Bacillus xiamenensis |
| 8 | 204128 | 204319 | + | NZ_CP011150.1 | Bacillus altitudinis |
| 9 | 1335416 | 1335607 | - | NZ_CP043404.1 | Bacillus safensis |
| 10 | 3643648 | 3643839 | - | NZ_CP024035.1 | Priestia aryabhattai |
| 11 | 3221367 | 3221558 | - | NZ_CP024035.1 | Priestia aryabhattai |
| 12 | 1292792 | 1292983 | - | NZ_CP061470.1 | Geobacillus zalihae |
| 13 | 931438 | 931629 | + | NZ_CP015438.1 | Anoxybacillus amylolyticus |
| 14 | 4733780 | 4733971 | + | NZ_CP030926.1 | Peribacillus butanolivorans |
| 15 | 194783 | 194977 | - | NZ_CP030926.1 | Peribacillus butanolivorans |
| 16 | 1846462 | 1846653 | + | NZ_CP018058.1 | Geobacillus thermocatenulatus |
| 17 | 1277916 | 1278107 | + | NZ_CP014342.1 | Geobacillus subterraneus |
| 18 | 441653 | 441844 | - | NZ_CP017704.1 | Peribacillus simplex NBRC 15720 = DSM 1321 |
| 19 | 5123338 | 5123532 | + | NZ_CP017704.1 | Peribacillus simplex NBRC 15720 = DSM 1321 |
| 20 | 2112583 | 2112774 | - | NC_006510.1 | Geobacillus kaustophilus HTA426 |
| 21 | 171064 | 171255 | + | NZ_CP061472.1 | Geobacillus thermoleovorans |
| 22 | 3284102 | 3284293 | - | NZ_CP070511.1 | Parageobacillus toebii |
| 23 | 1300707 | 1300898 | + | NZ_CP016622.1 | Parageobacillus thermoglucosidasius |
| 24 | 961484 | 961675 | + | NZ_CP023704.1 | Caldibacillus thermoamylovorans |
| 25 | 377330 | 377521 | + | NZ_CP023704.1 | Caldibacillus thermoamylovorans |
| 26 | 1172812 | 1173003 | + | NZ_CP023704.1 | Caldibacillus thermoamylovorans |
| 27 | 935444 | 935635 | + | NZ_CP023704.1 | Caldibacillus thermoamylovorans |
| 28 | 3758912 | 3759103 | - | NZ_CP018866.1 | Sutcliffiella cohnii |
| 29 | 349962 | 350153 | + | NZ_CP018866.1 | Sutcliffiella cohnii |
| 30 | 2148121 | 2148315 | + | NZ_CP018866.1 | Sutcliffiella cohnii |
| 31 | 4249933 | 4250127 | - | NZ_CP018866.1 | Sutcliffiella cohnii |
| 32 | 2905569 | 2905760 | + | NZ_CP017703.1 | Aeribacillus pallidus |
| 33 | 2890863 | 2891054 | + | NZ_CP017703.1 | Aeribacillus pallidus |
| 34 | 334887 | 335078 | + | NC_014829.1 | Evansella cellulosilytica DSM 2522 |
| 35 | 2462412 | 2462603 | + | NZ_CP017705.1 | Brevibacillus laterosporus DSM 25 |
| 36 | 1811861 | 1812052 | + | NZ_CP016020.1 | Bacillus weihaiensis |
| 37 | 424829 | 425020 | + | NZ_CP016020.1 | Bacillus weihaiensis |
| 38 | 3063411 | 3063602 | - | NZ_CP019401.1 | Planococcus faecalis |
| 39 | 2210858 | 2211049 | + | NZ_CP013661.2 | Planococcus kocurii |
| 40 | 292309 | 292500 | + | NZ_CP022657.1 | Tumebacillus algifaecis |
| 41 | 2893185 | 2893376 | - | NZ_CP016540.2 | Planococcus versutus |
| 42 | 783833 | 784024 | - | NZ_CP016809.1 | Paenibacillus ihbetae |
| 43 | 2605896 | 2606087 | - | NZ_CP016809.1 | Paenibacillus ihbetae |
| 44 | 3678718 | 3678909 | - | NZ_AP017312.1 | Aneurinibacillus soli |
| 45 | 3537104 | 3537295 | - | NZ_CP031092.1 | Salicibibacter kimchii |
| 46 | 368109 | 368300 | + | NZ_CP035485.1 | Salicibibacter halophilus |
| 47 | 3237036 | 3237227 | - | NZ_CP016534.2 | Planococcus antarcticus DSM 14505 |
| 48 | 2997778 | 2997969 | - | NZ_CP016537.2 | Planococcus halocryophilus |
| 49 | 2889233 | 2889424 | - | NZ_CP016543.2 | Planococcus donghaensis |
| 50 | 1808078 | 1808269 | + | NZ_CP018622.1 | Virgibacillus dokdonensis |
| 51 | 2476008 | 2476193 | + | NZ_CP018622.1 | Virgibacillus dokdonensis |
| 52 | 1261937 | 1262128 | - | NZ_CP021434.1 | Tumebacillus avium |
| 53 | 869654 | 869845 | - | NZ_CP021434.1 | Tumebacillus avium |
| 54 | 3699187 | 3699378 | - | NZ_CP017962.1 | Virgibacillus halodenitrificans |
| 55 | 2861489 | 2861680 | - | NZ_CP023665.1 | Bacillus paralicheniformis |
| 56 | 3005565 | 3005756 | - | NZ_LT603683.1 | Bacillus glycinifermentans |
| 57 | 2683101 | 2683292 | - | NC_006270.3 | Bacillus licheniformis DSM 13 = ATCC 14580 |
| 58 | 280559 | 280750 | + | NZ_CP034346.1 | Paenibacillus lutimineralis |
| 59 | 5537472 | 5537663 | - | NZ_CP034346.1 | Paenibacillus lutimineralis |
| 60 | 4336898 | 4337092 | - | NZ_CP040336.1 | Bacillus luti |
| 61 | 793724 | 793918 | + | NC_007530.2 | Bacillus anthracis str. 'Ames Ancestor' |
| 62 | 795597 | 795791 | + | NZ_CP064875.1 | Bacillus toyonensis |
| 63 | 802573 | 802767 | + | NC_011725.1 | Bacillus cereus B4264 |
| 64 | 783440 | 783634 | + | NZ_CP032365.1 | Bacillus wiedmannii |
| 65 | 1992291 | 1992488 | + | NZ_CP048104.1 | Kroppenstedtia pulmonis |
| 66 | 493187 | 493378 | - | NZ_CP063356.1 | Anaerobacillus isosaccharinicus |
| 67 | 1873187 | 1873378 | + | NZ_CP063356.1 | Anaerobacillus isosaccharinicus |
| 68 | 182568 | 182759 | - | NZ_CP054482.1 | Macrococcus bohemicus |
| 69 | 3355543 | 3355734 | - | NZ_CP013652.1 | Paenibacillus naphthalenovorans |
| 70 | 4963758 | 4963949 | + | NZ_CP013652.1 | Paenibacillus naphthalenovorans |
| 71 | 3025440 | 3025631 | + | NZ_CP009285.1 | Paenibacillus borealis |
| 72 | 682390 | 682581 | - | NZ_CP009416.1 | Jeotgalibacillus malaysiensis |
| 73 | 596996 | 597190 | + | NZ_CP009416.1 | Jeotgalibacillus malaysiensis |
| 74 | 6261531 | 6261722 | - | NZ_CP026520.1 | Paenibacillus chitinolyticus |
| 75 | 2661812 | 2662003 | - | NZ_CP013659.2 | Planococcus rifietoensis |
| 76 | 2832766 | 2832957 | - | NZ_CP016538.2 | Planococcus maritimus |
| 77 | 2853733 | 2853924 | - | NZ_CP059540.1 | Planococcus maritimus |
| 78 | 2781814 | 2782005 | - | NZ_CP016539.2 | Planococcus plakortidis |
| 79 | 1785341 | 1785532 | + | NZ_CP021780.1 | Paenibacillus donghaensis |
| 80 | 2720272 | 2720463 | - | NC_004193.1 | Oceanobacillus iheyensis HTE831 |
| 81 | 2163481 | 2163672 | + | NZ_CP004078.1 | Paenibacillus sabinae T27 |
| 82 | 2367676 | 2367867 | + | NZ_CP009288.1 | Paenibacillus durus |
| 83 | 4177054 | 4177248 | - | NZ_CP065425.1 | Heyndrickxia vini |
| 84 | 1246116 | 1246307 | + | NZ_CP065729.1 | Macrococcus caseolyticus |
| 85 | 839154 | 839345 | - | NZ_CP009709.1 | Weizmannia coagulans DSM 1 = ATCC 7050 |
| 86 | 1176118 | 1176309 | - | NZ_CP009709.1 | Weizmannia coagulans DSM 1 = ATCC 7050 |
| 87 | 2498936 | 2499130 | + | NC_010556.1 | Exiguobacterium sibiricum 255-15 |
| 88 | 368779 | 368967 | + | NC_010556.1 | Exiguobacterium sibiricum 255-15 |
| 89 | 1331829 | 1332020 | + | NZ_CP022315.1 | Virgibacillus phasianinus |
| 90 | 1032432 | 1032620 | - | NZ_CP022315.1 | Virgibacillus phasianinus |
| 91 | 1660788 | 1660979 | + | NZ_CP053989.1 | Niallia circulans |
| 92 | 1121018 | 1121215 | + | NZ_CP012024.1 | Bacillus smithii |
| 93 | 592582 | 592776 | + | NZ_CP015378.1 | Fictibacillus phosphorivorans |
| 94 | 524064 | 524255 | - | NZ_CP047361.1 | Macrococcus canis |
| 95 | 862429 | 862620 | + | NZ_CP029797.1 | Paraliobacillus zengyii |
| 96 | 1206942 | 1207133 | + | NC_017668.1 | Halobacillus halophilus DSM 2266 |
| 97 | 3896484 | 3896672 | + | NC_017668.1 | Halobacillus halophilus DSM 2266 |
| 98 | 3667729 | 3667920 | - | NZ_CP043611.1 | Paenibacillus antarcticus |
| 99 | 3129776 | 3129967 | - | NZ_CP045293.1 | Paenibacillus guangzhouensis |
| 100 | 4587297 | 4587491 | + | NZ_CP068053.1 | Peribacillus psychrosaccharolyticus |
| 101 | 4732049 | 4732240 | + | NZ_CP048429.1 | Paenibacillus jilunlii |
| 102 | 2797670 | 2797861 | + | NZ_CP009287.1 | Paenibacillus graminis |
| 103 | 4892844 | 4893035 | + | NZ_CP068595.1 | Paenibacillus sonchi |
| 104 | 1886424 | 1886615 | + | NC_017672.3 | Paenibacillus mucilaginosus K02 |
| 105 | 2876934 | 2877125 | + | NZ_CP019699.1 | Novibacillus thermophilus |
| 106 | 45886 | 46077 | - | NZ_CP041305.1 | Cytobacillus ciccensis |
| 107 | 824252 | 824443 | - | NZ_CP018199.1 | Staphylococcus succinus |
| 108 | 4120123 | 4120317 | - | NZ_CP042593.1 | Bacillus dafuensis |
| 109 | 1192384 | 1192575 | + | NC_022524.1 | Bacillus infantis NRRL B-14911 |
| 110 | 3931127 | 3931321 | - | NC_022524.1 | Bacillus infantis NRRL B-14911 |
| 111 | 3064460 | 3064651 | - | NZ_CP020772.1 | Halobacillus mangrovi |
| 112 | 518607 | 518795 | - | NZ_CP020772.1 | Halobacillus mangrovi |
| 113 | 2118692 | 2118886 | - | NZ_CP011366.1 | Salinicoccus halodurans |
| 114 | 2530979 | 2531173 | - | NZ_CP011366.1 | Salinicoccus halodurans |
| 115 | 2582961 | 2583155 | - | NZ_CP038012.1 | Sporosarcina pasteurii |
| 116 | 1661020 | 1661214 | - | NZ_CP015108.1 | Sporosarcina ureae |
| 117 | 393135 | 393326 | + | NZ_LS483476.1 | Lederbergia lentus |
| 118 | 4030397 | 4030588 | + | NC_019897.1 | Thermobacillus composti KWC4 |
| 119 | 435553 | 435744 | + | NZ_CP022437.1 | Virgibacillus necropolis |
| 120 | 1373405 | 1373599 | + | NZ_CP012152.1 | Anoxybacillus gonensis |
| 121 | 3051091 | 3051288 | - | NZ_CP048103.1 | Kroppenstedtia eburnea |
| 122 | 2255696 | 2255887 | - | NZ_CP013862.1 | Lentibacillus amyloliquefaciens |
| 123 | 2916683 | 2916871 | - | NZ_CP020028.1 | Paenibacillus kribbensis |
| 124 | 2569425 | 2569616 | + | NZ_CP013114.1 | Staphylococcus equorum |
| 125 | 2180936 | 2181127 | + | NZ_CP068061.1 | Mammaliicoccus vitulinus |
| 126 | 1934166 | 1934360 | - | NC_018704.1 | Amphibacillus xylanus NBRC 15112 |
| 127 | 71372 | 71563 | - | NZ_CP064056.1 | Staphylococcus lloydii |
| 128 | 50395 | 50589 | - | NZ_CP017560.1 | Sporosarcina ureilytica |
| 129 | 144464 | 144655 | + | NZ_CP035288.1 | Staphylococcus epidermidis |
| 130 | 4442097 | 4442291 | - | NZ_CP014616.1 | Sporosarcina psychrophila |
| 131 | 888944 | 889135 | + | NZ_CP033732.1 | Staphylococcus hominis |
| 132 | 2313746 | 2313934 | + | NZ_CP040676.1 | Exiguobacterium mexicanum |
| 133 | 37973 | 38164 | - | NC_007795.1 | Staphylococcus aureus subsp. aureus NCTC 8325 |
| 134 | 2511650 | 2511841 | + | NZ_LR134089.1 | Staphylococcus saprophyticus |
| 135 | 875887 | 876078 | + | NZ_CP038015.1 | Paenisporosarcina antarctica |
| 136 | 2315124 | 2315315 | - | NZ_CP038015.1 | Paenisporosarcina antarctica |
| 137 | 110142 | 110330 | - | NZ_CP034248.1 | Paenibacillus lentus |
| 138 | 284478 | 284666 | - | NZ_CP011361.2 | Salimicrobium jeotgali |
| 139 | 4887746 | 4887934 | + | NZ_CP045298.1 | Paenibacillus brasilensis |
| 140 | 131822 | 132013 | + | NZ_CP006837.1 | Lysinibacillus varians |
| 141 | 4541565 | 4541756 | - | NZ_CP019980.1 | Lysinibacillus sphaericus |
| 142 | 1064292 | 1064480 | - | NZ_CP022983.1 | Cytobacillus kochii |
| 143 | 273887 | 274078 | - | NZ_CP048286.1 | Paenibacillus rhizovicinus |
| 144 | 3801337 | 3801525 | + | NZ_CP048286.1 | Paenibacillus rhizovicinus |
| 145 | 61654 | 61845 | - | NZ_LR134304.1 | Staphylococcus schweitzeri |
| 146 | 848612 | 848803 | - | NZ_CP027770.1 | Staphylococcus felis |
| 147 | 4799789 | 4799977 | - | NC_016641.1 | Paenibacillus terrae HPL-003 |
| 148 | 611892 | 612053 | - | NZ_CP034437.1 | Paenibacillus albus |
| 149 | 186554 | 186745 | + | NZ_CP034437.1 | Paenibacillus albus |
| 150 | 4717254 | 4717445 | - | NZ_CP010820.1 | Lysinibacillus fusiformis |
| 151 | 547896 | 548087 | + | NZ_CP054614.1 | Paenibacillus barcinonensis |
| 152 | 365863 | 366054 | + | NZ_CP031223.1 | Psychrobacillus glaciei |
| 153 | 482408 | 482599 | - | NZ_CP026363.1 | Brevibacillus agri |
| 154 | 1424838 | 1425029 | - | NZ_CP014164.1 | Aerococcus viridans |
| 155 | 3039549 | 3039740 | + | NZ_CP009286.1 | Paenibacillus stellifer |
| 156 | 3052740 | 3052934 | + | NZ_CP009286.1 | Paenibacillus stellifer |
| 157 | 48673 | 48864 | - | NZ_CP048209.1 | Paenibacillus lycopersici |
| 158 | 4692251 | 4692442 | + | NZ_CP045295.1 | Paenibacillus cellulositrophicus |
| 159 | 94904 | 95095 | + | NZ_LR134338.1 | Brevibacillus brevis |
| 160 | 1578855 | 1579016 | + | NZ_CP014167.1 | Paenibacillus yonginensis |
| 161 | 3870552 | 3870746 | - | NZ_CP024848.1 | Oceanobacillus zhaokaii |
| 162 | 3831358 | 3831546 | - | NZ_CP041695.1 | Nocardia otitidiscaviarum |
| 163 | 3223067 | 3223267 | - | NZ_CP021080.1 | Streptomyces pluripotens |
| 164 | 203418 | 203618 | + | NZ_CP063374.1 | Streptomyces chromofuscus |
| 165 | 4076532 | 4076732 | - | NZ_CP051006.1 | Streptomyces griseofuscus |
++ More..
| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_CP013984.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF00753.29 | 0.61 | 82 | 1540.0 | same-strand | Metallo-beta-lactamase superfamily |
| 2 | PF00581.22 | 0.88 | 119 | 967 | same-strand | Rhodanese-like domain |
| 3 | PF02635.17 | 0.61 | 82 | 194 | same-strand | DsrE/DsrF-like family |
| 4 | PF01206.19 | 0.78 | 105 | 1130.0 | same-strand | Sulfurtransferase TusA |
| 5 | PF13686.8 | 0.72 | 97 | 161.0 | same-strand | DsrE/DsrF/DrsH-like family |
++ More..