Protein Information |
Information Type | Description |
---|---|
Protein name | Uncharacterized protein YpjK |
NCBI Accession ID | U00096.3 |
Organism | Escherichia coli (strain K12) |
Left | 2770445 |
Right | 2770681 |
Strand | + |
Nucleotide Sequence | GTGCCCGTTATTGCCATTATCGCCATTGTTATCATCGTCATCATTCTGAACAAAACCGGAGTGTCCGACAGCCTCACGGCCCTGACACTTGCAACCGTTGCCGCACTACTGACGGGAGGTGGTGCAGCCGGTGCTGCCAGTGTCGCGCTGACGCCGTTCGTCGGCGTGCCGGTGGGTATTTTTGTGGGAATTTATGTCTTTGCCAAAGTGGTTCGTCTGATTTCAGGGAAAAAATAA |
Sequence | MPVIAIIAIVIIVIILNKTGVSDSLTALTLATVAALLTGGGAAGAASVALTPFVGVPVGIFVGIYVFAKVVRLISGKK |
Source of smORF | Swiss-Prot |
Function | |
Pubmed ID | 9278503 16738553 |
Domain | |
Functional Category | Others |
Uniprot ID | P52134 |
ORF Length (Amino Acid) | 78 |
Conservation Analysis |
Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
---|---|---|---|---|---|
1 | 2730152 | 2730388 | - | NZ_CP023529.1 | Lelliottia amnigena |
2 | 605687 | 605923 | + | NZ_CP032487.1 | Yersinia hibernica |
3 | 1137605 | 1137841 | - | NZ_CP043318.1 | Enterobacter chengduensis |
4 | 2770445 | 2770681 | + | NC_000913.3 | Escherichia coli str. K-12 substr. MG1655 |
5 | 519984 | 520217 | + | NZ_CP038498.1 | Pectobacterium punjabense |
6 | 2628117 | 2628350 | + | NZ_CP015749.1 | Pectobacterium parmentieri |
Neighborhood Conservation Analysis |
Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
---|---|---|---|---|---|---|
1 | PF06067.13 | 0.67 | 4 | 960.0 | same-strand | Domain of unknown function (DUF932) |
2 | PF01926.25 | 1.0 | 6 | 1875.0 | same-strand | 50S ribosome-binding GTPase |
3 | PF04002.17 | 0.67 | 4 | 949.5 | same-strand | RadC-like JAB domain |