* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_AP018795.1
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF00034.23
|
0.67
|
2
|
3519.0
|
same-strand
|
Cytochrome c
|
2
|
PF13442.8
|
0.67
|
2
|
3519.0
|
same-strand
|
Cytochrome C oxidase, cbb3-type, subunit III
|
3
|
PF00106.27
|
0.67
|
2
|
2704.0
|
same-strand
|
short chain dehydrogenase
|
4
|
PF10399.11
|
0.67
|
2
|
2053.0
|
same-strand
|
Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal
|
5
|
PF00033.21
|
0.67
|
2
|
811.0
|
same-strand
|
Cytochrome b/b6/petB
|
6
|
PF13631.8
|
0.67
|
2
|
811.0
|
same-strand
|
Cytochrome b(N-terminal)/b6/petB
|
7
|
PF00032.19
|
0.67
|
2
|
811.0
|
same-strand
|
Cytochrome b(C-terminal)/b6/petD
|
8
|
PF02167.17
|
0.67
|
2
|
87.0
|
same-strand
|
Cytochrome C1 family
|
9
|
PF01292.22
|
0.67
|
2
|
727.5
|
same-strand
|
Prokaryotic cytochrome b561
|
10
|
PF01728.21
|
0.67
|
2
|
1490.5
|
opposite-strand
|
FtsJ-like methyltransferase
|
11
|
PF01985.23
|
0.67
|
2
|
2242.5
|
same-strand
|
CRS1 / YhbY (CRM) domain
|
++ More..