Result : P47474
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | 50S ribosomal protein L21 |
| NCBI Accession ID | L43967.2 |
| Organism | Mycoplasma genitalium (strain ATCC 33530 / G-37 / NCTC 10195) |
| Left | 278905 |
| Right | 279207 |
| Strand | + |
| Nucleotide Sequence | ATGCATGCTATTGTGGTTTGTGGTGCTAAGCAGTATTTAGTCCATGAAAACGAGTCTATTTTTGTTGAAAAATTAGCTGGTAAAGTTGGTCAGGAGATCCAACTTGATAAGGTATTGATGCTTGATGAAAAGATAGGCAAACCTTACCTTGAAAAAGCTAAGGTTGTTTGTGTGATTGAAAAACACGGTTTAAAATCGAAAATTAAACTAATTAAACACATCTCCCAAAAACACCACCTCAAGCGTTATGGCCACCGTCAACCCTACACCAAACTAAAAGTGGTACGCTTTATCCATGATTAA |
| Sequence | MHAIVVCGAKQYLVHENESIFVEKLAGKVGQEIQLDKVLMLDEKIGKPYLEKAKVVCVIEKHGLKSKIKLIKHISQKHHLKRYGHRQPYTKLKVVRFIHD |
| Source of smORF | Swiss-Prot |
| Function | This protein binds to 23S rRNA in the presence of protein L20. {ECO:0000255|HAMAP-Rule:MF_01363}. |
| Pubmed ID | 7569993 8253680 |
| Domain | CDD:412347 |
| Functional Category | Ribosomal_protein |
| Uniprot ID | P47474 |
| ORF Length (Amino Acid) | 100 |
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| Conservation Analysis |
No. of Species: 8
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 278905 | 279207 | + | NC_000908.2 | Mycoplasma genitalium G37 |
| 2 | 384262 | 384564 | + | NZ_CP010546.1 | Mycoplasma pneumoniae FH |
| 3 | 414574 | 414876 | + | NZ_CP059674.1 | Mycoplasma tullyi |
| 4 | 476370 | 476672 | + | NC_018406.1 | Mycoplasma gallisepticum VA94_7994-1-7P |
| 5 | 174754 | 175053 | + | NZ_LR215024.1 | Mycoplasmopsis glycophila |
| 6 | 459699 | 460001 | + | NZ_LR215023.1 | Mycoplasma iowae |
| 7 | 579621 | 579923 | + | NC_004432.1 | Mycoplasma penetrans HF-2 |
| 8 | 2485521 | 2485832 | - | NC_013223.1 | Desulfohalobium retbaense DSM 5692 |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_000908.2
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF01016.21 | 0.75 | 6 | 286.5 | same-strand | Ribosomal L27 protein |
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