Result : A5FMZ2
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | 50S ribosomal protein L29 |
| NCBI Accession ID | CP000685.1 |
| Organism | Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / JCM 8514 / NBRC 14942 / NCIMB 11054 / UW101) (Cytophaga johnsonae) |
| Left | 402994 |
| Right | 403185 |
| Strand | - |
| Nucleotide Sequence | ATGAAACAATCAGAAATAAAAGATCTTTCTGCAGCGGAGTTGCAAGAAAAGCTTAGTCAAACTAAGAAAGTATATGCTGACCTAAAAATGGCTCACGCTATTTCTCCAATTGCTAACCCACTTCGAATTAGAAGCGTTAGAAGAACAGTTGCTAGATTAGCTACAGAGTTAACTAAAAGAGAGTTACAATAA |
| Sequence | MKQSEIKDLSAAELQEKLSQTKKVYADLKMAHAISPIANPLRIRSVRRTVARLATELTKRELQ |
| Source of smORF | Swiss-Prot |
| Function | The ORF matches to the profile of cl09943. Profile Description: N/A. This family represents the N-terminal region (approximately 8 residues) of the eukaryotic mitochondrial 39-S ribosomal protein L47 (MRP-L47). Mitochondrial ribosomal proteins (MRPs) are the counterparts of the cytoplasmic ribosomal proteins, in that they fulfil similar functions in protein biosynthesis. However, they are distinct in number, features and primary structure. |
| Pubmed ID | 19717629 |
| Domain | CDD:415815 |
| Functional Category | Ribosomal_protein |
| Uniprot ID | A5FMZ2 |
| ORF Length (Amino Acid) | 63 |
++ More..
| Conservation Analysis |
No. of Species: 126
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 402994 | 403185 | - | NC_009441.1 | Flavobacterium johnsoniae UW101 |
| 2 | 2430807 | 2430998 | + | NZ_CP016907.1 | Flavobacterium anhuiense |
| 3 | 2349586 | 2349777 | + | NZ_CP043612.1 | Flavobacterium nitrogenifigens |
| 4 | 410556 | 410747 | - | NZ_CP029255.1 | Flavobacterium crocinum |
| 5 | 195642 | 195833 | - | NZ_CP017479.1 | Flavobacterium gilvum |
| 6 | 1178925 | 1179116 | + | NZ_CP017688.1 | Flavobacterium crassostreae |
| 7 | 3399767 | 3399958 | + | NZ_CP037933.1 | Flavobacterium nackdongense |
| 8 | 2990655 | 2990846 | - | NC_016001.1 | Flavobacterium branchiophilum FL-15 |
| 9 | 1726101 | 1726292 | + | NZ_CP020918.1 | Flavobacterium faecale |
| 10 | 175379 | 175570 | - | NZ_CP028811.1 | Flavobacterium magnum |
| 11 | 166894 | 167085 | - | NZ_CP029187.1 | Flavobacterium pallidum |
| 12 | 2003366 | 2003557 | + | NZ_CP020919.1 | Flavobacterium kingsejongi |
| 13 | 830465 | 830656 | - | NZ_CP017774.1 | Flavobacterium commune |
| 14 | 3380704 | 3380895 | + | NZ_CP012898.1 | Algibacter alginicilyticus |
| 15 | 870247 | 870438 | + | NZ_CP019352.1 | Lacinutrix venerupis |
| 16 | 866810 | 867001 | - | NZ_CP054494.1 | Flavobacterium columnare |
| 17 | 4160506 | 4160697 | + | NZ_CP025791.1 | Flavivirga eckloniae |
| 18 | 1346355 | 1346546 | + | NZ_CP038810.1 | Flavobacterium sangjuense |
| 19 | 794958 | 795149 | - | NZ_CP025938.1 | Tamlana carrageenivorans |
| 20 | 815788 | 815979 | - | NZ_CP029463.1 | Flavobacterium sediminis |
| 21 | 261201 | 261392 | - | NZ_CP029186.1 | Flavobacterium album |
| 22 | 1693684 | 1693875 | + | NZ_CP041637.1 | Formosa sediminum |
| 23 | 232626 | 232817 | - | NZ_CP007202.1 | Siansivirga zeaxanthinifaciens CC-SAMT-1 |
| 24 | 597751 | 597942 | - | NZ_CP031188.1 | Flavobacterium arcticum |
| 25 | 841193 | 841384 | - | NZ_CP039456.1 | Changchengzhania lutea |
| 26 | 1672646 | 1672837 | + | NZ_CP042831.1 | Flavobacterium alkalisoli |
| 27 | 1964416 | 1964607 | + | NZ_CP061703.1 | Mesoflavibacter profundi |
| 28 | 1698372 | 1698563 | - | NZ_CP040812.1 | Antarcticibacterium flavum |
| 29 | 69272 | 69463 | + | NZ_CP018155.1 | Tenacibaculum todarodis |
| 30 | 2273488 | 2273679 | - | NZ_CP019288.1 | Kordia antarctica |
| 31 | 4166477 | 4166668 | - | NC_014041.1 | Zunongwangia profunda SM-A87 |
| 32 | 3583655 | 3583846 | + | NZ_CP017477.1 | Polaribacter vadi |
| 33 | 2939357 | 2939548 | - | NC_008571.1 | Gramella forsetii KT0803 |
| 34 | 791945 | 792136 | - | NZ_CP022378.1 | Capnocytophaga cynodegmi |
| 35 | 776065 | 776256 | - | NZ_CP011071.1 | Muricauda lutaonensis |
| 36 | 419328 | 419519 | - | NZ_CP028136.1 | Gramella fulva |
| 37 | 795109 | 795300 | + | NZ_CP053351.1 | Winogradskyella schleiferi |
| 38 | 339275 | 339466 | - | NZ_CP019419.1 | Polaribacter reichenbachii |
| 39 | 1985699 | 1985890 | + | NZ_CP022387.1 | Capnocytophaga stomatis |
| 40 | 3223301 | 3223492 | + | NZ_CP042476.1 | Antarcticibacterium arcticum |
| 41 | 925227 | 925418 | - | NZ_CP016359.1 | Gramella flava JLT2011 |
| 42 | 2180838 | 2181029 | - | NZ_CP020822.1 | Tenacibaculum maritimum |
| 43 | 2803642 | 2803833 | + | NZ_CP018153.1 | Gramella salexigens |
| 44 | 824600 | 824791 | + | NZ_CP053348.1 | Winogradskyella forsetii |
| 45 | 1451310 | 1451498 | + | NZ_CP015125.1 | Dokdonia donghaensis DSW-1 |
| 46 | 2108056 | 2108247 | + | NZ_CP022389.1 | Capnocytophaga canimorsus |
| 47 | 3814479 | 3814670 | - | NZ_LT899436.1 | Tenacibaculum jejuense |
| 48 | 720859 | 721050 | - | NC_015945.1 | Muricauda ruestringensis DSM 13258 |
| 49 | 1732716 | 1732907 | - | NZ_CP061813.1 | Polaribacter haliotis |
| 50 | 1940956 | 1941147 | + | NZ_LT906449.1 | Capnocytophaga haemolytica |
| 51 | 885986 | 886177 | - | NZ_CP030104.1 | Flagellimonas maritima |
| 52 | 1120727 | 1120918 | - | NZ_CP013355.1 | Lutibacter profundi |
| 53 | 1375604 | 1375795 | + | NC_013162.1 | Capnocytophaga ochracea DSM 7271 |
| 54 | 2056581 | 2056772 | + | NZ_CP022379.1 | Capnocytophaga sputigena |
| 55 | 3312205 | 3312396 | - | NZ_CP022022.1 | Capnocytophaga endodontalis |
| 56 | 2814619 | 2814804 | - | NZ_CP014224.1 | Wenyingzhuangia fucanilytica |
| 57 | 1468232 | 1468423 | + | NC_013222.1 | Robiginitalea biformata HTCC2501 |
| 58 | 3272953 | 3273144 | + | NZ_CP017478.1 | Urechidicola croceus |
| 59 | 2428787 | 2428978 | + | NC_015167.1 | Cellulophaga lytica DSM 7489 |
| 60 | 3990688 | 3990879 | - | NZ_CP032050.1 | Euzebyella marina |
| 61 | 3471754 | 3471945 | - | NZ_CP010817.1 | Myroides profundi |
| 62 | 816178 | 816369 | - | NZ_CP022957.1 | Maribacter cobaltidurans |
| 63 | 2060749 | 2060940 | + | NC_018013.1 | Aequorivita sublithincola DSM 14238 |
| 64 | 1498416 | 1498607 | - | NZ_CP022386.1 | Capnocytophaga gingivalis |
| 65 | 247600 | 247791 | - | NZ_CP009976.1 | Cellulophaga baltica 18 |
| 66 | 665350 | 665532 | + | NC_017025.1 | Flavobacterium indicum GPTSA100-9 = DSM 17447 |
| 67 | 708746 | 708937 | - | NC_014934.1 | Cellulophaga algicola DSM 14237 |
| 68 | 2680165 | 2680356 | + | NZ_CP058595.1 | Costertonia aggregata |
| 69 | 1303600 | 1303794 | + | NC_014230.1 | Croceibacter atlanticus HTCC2559 |
| 70 | 2045285 | 2045476 | + | NZ_CP039934.1 | Myroides fluvii |
| 71 | 2980903 | 2981094 | + | NC_015844.1 | Zobellia galactanivorans |
| 72 | 1595431 | 1595622 | + | NZ_CP053352.1 | Winogradskyella helgolandensis |
| 73 | 1075374 | 1075565 | - | NC_018721.1 | Psychroflexus torquis ATCC 700755 |
| 74 | 3680398 | 3680583 | + | NZ_CP033926.1 | Chryseobacterium joostei |
| 75 | 699894 | 700079 | + | NZ_LR134386.1 | Chryseobacterium nakagawai |
| 76 | 1835488 | 1835673 | + | NZ_CP033924.1 | Chryseobacterium lactis |
| 77 | 4029222 | 4029407 | - | NZ_CP033914.1 | Chryseobacterium shandongense |
| 78 | 1699886 | 1700071 | + | NZ_CP033932.1 | Chryseobacterium bernardetii |
| 79 | 3177039 | 3177224 | + | NZ_CP022986.1 | Chryseobacterium camelliae |
| 80 | 1976156 | 1976341 | + | NZ_LT906465.1 | Chryseobacterium taklimakanense |
| 81 | 1841805 | 1841993 | - | NZ_CP034159.1 | Kaistella carnis |
| 82 | 2742437 | 2742622 | - | NZ_CP050995.1 | Chryseobacterium gallinarum |
| 83 | 4044426 | 4044611 | + | NZ_LR134289.1 | Chryseobacterium gleum |
| 84 | 1514856 | 1515044 | - | NZ_CP015199.1 | Chryseobacterium glaciei |
| 85 | 1882852 | 1883037 | - | NZ_LR215974.1 | Chryseobacterium taihuense |
| 86 | 814961 | 815149 | - | NZ_CP033920.1 | Chryseobacterium carnipullorum |
| 87 | 1093929 | 1094117 | - | NZ_CP063145.1 | Cruoricaptor ignavus |
| 88 | 1141929 | 1142114 | - | NC_017045.1 | Riemerella anatipestifer ATCC 11845 = DSM 15868 |
| 89 | 1721827 | 1722015 | - | NZ_LR134503.1 | Kaistella jeonii |
| 90 | 1084562 | 1084753 | + | NZ_AP014564.1 | Ichthyobacterium seriolicida |
| 91 | 128626 | 128820 | - | NZ_CP069450.1 | Butyricimonas virosa |
| 92 | 3496234 | 3496428 | + | NZ_CP032819.1 | Butyricimonas faecalis |
| 93 | 747872 | 748057 | + | NZ_CP033929.1 | Chryseobacterium indoltheticum |
| 94 | 2806168 | 2806368 | - | NZ_CP048106.1 | Pontibacter pudoricolor |
| 95 | 4492786 | 4492986 | + | NZ_CP021235.1 | Pontibacter actiniarum |
| 96 | 3283947 | 3284147 | + | NZ_CP047984.1 | Pontibacter russatus |
| 97 | 2548130 | 2548315 | - | NZ_CP015067.2 | Elizabethkingia anophelis |
| 98 | 4172045 | 4172230 | + | NZ_CP014337.1 | Elizabethkingia bruuniana |
| 99 | 2749174 | 2749362 | - | NZ_CP023049.2 | Chryseobacterium piperi |
| 100 | 2515450 | 2515650 | + | NZ_CP014766.1 | Pontibacter akesuensis |
| 101 | 2982451 | 2982645 | + | NC_014734.1 | Paludibacter propionicigenes WB4 |
| 102 | 1498894 | 1499097 | + | NZ_CP006828.1 | Ornithobacterium rhinotracheale ORT-UMN 88 |
| 103 | 3692310 | 3692513 | + | NZ_CP013118.1 | Salinivirga cyanobacteriivorans |
| 104 | 276559 | 276753 | + | NZ_CP010777.1 | Rufibacter radiotolerans |
| 105 | 3983899 | 3984108 | - | NZ_CP054139.1 | Mucilaginibacter mali |
| 106 | 5262547 | 5262756 | + | NZ_CP048222.1 | Rhodocytophaga rosea |
| 107 | 218800 | 218979 | - | NZ_CP034930.1 | Apibacter raozihei |
| 108 | 1543479 | 1543676 | - | NZ_AP018042.1 | Labilibaculum antarcticum |
| 109 | 3094634 | 3094831 | + | NZ_CP015402.2 | Muribaculum intestinale |
| 110 | 2877048 | 2877242 | + | NZ_CP012643.1 | Rufibacter tibetensis |
| 111 | 5274218 | 5274412 | + | NC_013037.1 | Dyadobacter fermentans DSM 18053 |
| 112 | 4575858 | 4576061 | - | NZ_CP022743.1 | Mucilaginibacter xinganensis |
| 113 | 5048517 | 5048726 | + | NZ_CP024091.1 | Pedobacter ginsengisoli |
| 114 | 1915637 | 1915837 | - | NC_015703.1 | Runella slithyformis DSM 19594 |
| 115 | 2137980 | 2138189 | - | NZ_CP066775.1 | Mucilaginibacter ginkgonis |
| 116 | 5086833 | 5087042 | - | NZ_CP042436.1 | Mucilaginibacter ginsenosidivorans |
| 117 | 726829 | 727038 | + | NC_013061.1 | Pedobacter heparinus DSM 2366 |
| 118 | 1698229 | 1698438 | - | NZ_CP042437.1 | Mucilaginibacter ginsenosidivorax |
| 119 | 1106792 | 1106995 | + | NZ_AP017313.1 | Mucilaginibacter gotjawali |
| 120 | 6715122 | 6715331 | + | NZ_CP032869.1 | Mucilaginibacter celer |
| 121 | 3759397 | 3759606 | - | NZ_CP071878.1 | Mucilaginibacter gossypii |
| 122 | 173307 | 173501 | - | NZ_CP050063.1 | Spirosoma aureum |
| 123 | 4442012 | 4442224 | - | NZ_CP060723.1 | Pedobacter roseus |
| 124 | 3596114 | 3596308 | + | NC_014759.1 | Marivirga tractuosa DSM 4126 |
| 125 | 5868544 | 5868750 | + | NZ_CP048113.1 | Chitinophaga agri |
| 126 | 1968972 | 1969178 | + | NC_013132.1 | Chitinophaga pinensis DSM 2588 |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_009441.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF00253.23 | 0.97 | 122 | 1533.0 | same-strand | Ribosomal protein S14p/S29e |
| 2 | PF00673.23 | 1.0 | 126 | 977.0 | same-strand | ribosomal L5P family C-terminus |
| 3 | PF00281.21 | 1.0 | 126 | 977.0 | same-strand | Ribosomal protein L5 |
| 4 | PF17136.6 | 0.98 | 123 | 659 | same-strand | Ribosomal proteins 50S L24/mitochondrial 39S L24 |
| 5 | PF00467.31 | 0.85 | 107 | 659 | same-strand | KOW motif |
| 6 | PF00238.21 | 0.99 | 125 | 275 | same-strand | Ribosomal protein L14p/L23e |
| 7 | PF00366.22 | 1.0 | 126 | 15.0 | same-strand | Ribosomal protein S17 |
| 8 | PF00252.20 | 0.99 | 125 | 13 | same-strand | Ribosomal protein L16p/L10e |
| 9 | PF00189.22 | 1.0 | 126 | 458.5 | same-strand | Ribosomal protein S3, C-terminal domain |
| 10 | PF07650.19 | 1.0 | 126 | 458.5 | same-strand | KH domain |
| 11 | PF00237.21 | 1.0 | 126 | 1204.0 | same-strand | Ribosomal protein L22p/L17e |
| 12 | PF00203.23 | 0.99 | 125 | 1622 | same-strand | Ribosomal protein S19 |
| 13 | PF03947.20 | 1.0 | 126 | 1909.5 | same-strand | Ribosomal Proteins L2, C-terminal domain |
| 14 | PF00181.25 | 1.0 | 126 | 1909.5 | same-strand | Ribosomal Proteins L2, RNA binding domain |
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