Protein Information |
Information Type | Description |
---|---|
Protein name | Mu-like prophage FluMu DNA-binding protein Ner |
NCBI Accession ID | L42023.1 |
Organism | Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) |
Left | 1560909 |
Right | 1561178 |
Strand | + |
Nucleotide Sequence | ATGAGTGTATTAGAAAAACCAAAAAAAACCGCAGAACAGGATTGGCACCGCGCCGATATTCTTGCGGAATTAAAAAAGAATGGTTGGTCGCTTCGCTCTTTAGCAAAAGAGGGGCAAGTCAGCTACAACACATTAAAAACAGTTTTGGATAAATCTTATCCAAAGATGGAGCGTTTAGTTGCAAATGCAATTGGTGTTCCACCTGAAGTTATCTGGGCTGGTCGTTTTGCTGAACGAAATAAAAGACCAACATTACAACATAAGTACTGA |
Sequence | MSVLEKPKKTAEQDWHRADILAELKKNGWSLRSLAKEGQVSYNTLKTVLDKSYPKMERLVANAIGVPPEVIWAGRFAERNKRPTLQHKY |
Source of smORF | Swiss-Prot |
Function | Negative regulator of transcription starting from the Pe and Pc promoters of Mu. Also negatively regulates its own gene transcription (By similarity). {ECO:0000250}. |
Pubmed ID | 7542800 |
Domain | CDD:419869 |
Functional Category | DNA-binding |
Uniprot ID | P46496 |
ORF Length (Amino Acid) | 89 |
Conservation Analysis |
Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
---|---|---|---|---|---|
1 | 50811 | 51089 | - | NC_021883.1 | Mannheimia haemolytica USMARC_2286 |
2 | 113432 | 113695 | + | NC_021883.1 | Mannheimia haemolytica USMARC_2286 |
3 | 663490 | 663768 | - | NZ_CP007715.1 | Actinobacillus equuli subsp. equuli |
4 | 227069 | 227287 | + | NZ_LS483429.1 | Haemophilus aegyptius |
5 | 2535648 | 2535908 | + | NZ_CP030241.1 | Moraxella bovis |
6 | 2056898 | 2057146 | - | NZ_CP031253.1 | Neisseria lactamica |
7 | 703836 | 704054 | - | NZ_LT906482.1 | Eikenella corrodens |
8 | 1426057 | 1426296 | + | NZ_LT906482.1 | Eikenella corrodens |
9 | 1114253 | 1114474 | - | NZ_LT906482.1 | Eikenella corrodens |
10 | 154356 | 154628 | + | NZ_CP031415.1 | Saccharospirillum mangrovi |
11 | 724857 | 725096 | - | NZ_CP038018.1 | Eikenella exigua |
12 | 1721463 | 1721750 | - | NZ_AP017372.2 | Halorhodospira halochloris |
13 | 334411 | 334662 | - | NZ_LR134327.1 | Aggregatibacter aphrophilus ATCC 33389 |
14 | 14779 | 15030 | - | NZ_LR134327.1 | Aggregatibacter aphrophilus ATCC 33389 |
15 | 884879 | 885100 | - | NZ_CP032487.1 | Yersinia hibernica |
16 | 1256755 | 1256976 | + | NZ_CP046293.1 | Yersinia intermedia |
17 | 4645373 | 4645675 | + | NC_010170.1 | Bordetella petrii |
Neighborhood Conservation Analysis |
Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
---|---|---|---|---|---|---|
1 | PF00717.25 | 0.62 | 8 | 221.5 | opposite-strand | Peptidase S24-like |
2 | PF13401.8 | 0.62 | 8 | 2266.5 | same-strand | AAA domain |
3 | PF09299.13 | 0.69 | 9 | 44.5 | same-strand | Mu transposase, C-terminal |