Result : P46050
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | Ferredoxin-3 (Ferredoxin III) (FdIII) |
| NCBI Accession ID | Z46890.1 |
| Organism | Trichormus variabilis (strain ATCC 29413 / PCC 7937) (Anabaena variabilis) |
| Left | 1716 |
| Right | 2012 |
| Strand | + |
| Nucleotide Sequence | ATGGCAACACTCACTGGTTTAACCTTTGGAGGTCAAGTCTGGACACCCCAATTTGTAGAAGCAGTTAACCAAGATAAATGTATTGGTTGTGGTCGATGCTTTAAGGCTTGCGGCCGGAATGTGCTAATACTGCAAGCGCTGAATGAAAATGGCGAATTTGTAGAAGATGAGGAGGGGGAAGAAATCGAACGCAAAGTAATGTCTATTATTCATCCAGAGTATTGTATTGGCTGTCAGGCTTGCGCTAGGGCTTGTCCGAAAAATTGTTACACCCATAGCCCACTTGAACATAATTAA |
| Sequence | MATLTGLTFGGQVWTPQFVEAVNQDKCIGCGRCFKACGRNVLILQALNENGEFVEDEEGEEIERKVMSIIHPEYCIGCQACARACPKNCYTHSPLEHN |
| Source of smORF | Swiss-Prot |
| Function | Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions. |
| Pubmed ID | 8709854 25197444 |
| Domain | CDD:224069,CDD:418523 |
| Functional Category | Metal-binding |
| Uniprot ID | P46050 |
| ORF Length (Amino Acid) | 98 |
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| Conservation Analysis |
No. of Species: 46
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 271916 | 272212 | + | NZ_CP047242.1 | Trichormus variabilis 0441 |
| 2 | 1864229 | 1864522 | + | NZ_CP047242.1 | Trichormus variabilis 0441 |
| 3 | 5143038 | 5143334 | - | NC_019695.1 | Chroococcidiopsis thermalis PCC 7203 |
| 4 | 4088430 | 4088723 | + | NC_014501.1 | Gloeothece verrucosa PCC 7822 |
| 5 | 2360009 | 2360302 | - | NC_011729.1 | Gloeothece citriformis PCC 7424 |
| 6 | 2405480 | 2405770 | + | NC_019751.1 | Calothrix sp. PCC 6303 |
| 7 | 1311637 | 1311945 | - | NC_011761.1 | Acidithiobacillus ferrooxidans ATCC 23270 |
| 8 | 1636913 | 1637221 | - | NC_015942.1 | Acidithiobacillus ferrivorans SS3 |
| 9 | 2259985 | 2260293 | - | NZ_AP018795.1 | Acidithiobacillus ferridurans |
| 10 | 2730386 | 2730679 | - | NC_014248.1 | 'Nostoc azollae' 0708 |
| 11 | 2497156 | 2497446 | + | NZ_AP014638.1 | Leptolyngbya boryana IAM M-101 |
| 12 | 2737114 | 2737407 | - | NZ_CP060822.1 | Cylindrospermopsis curvispora GIHE-G1 |
| 13 | 88026 | 88319 | + | NC_019771.1 | Anabaena cylindrica PCC 7122 |
| 14 | 965249 | 965542 | + | NZ_CP031941.1 | Nostoc sphaeroides |
| 15 | 5215905 | 5216198 | - | NZ_CP024785.1 | Nostoc flagelliforme CCNUN1 |
| 16 | 523264 | 523557 | - | NZ_CP054698.1 | Nostoc edaphicum CCNP1411 |
| 17 | 2500660 | 2500971 | + | NC_017094.1 | Leptospirillum ferrooxidans C2-3 |
| 18 | 421151 | 421444 | + | NC_010628.1 | Nostoc punctiforme PCC 73102 |
| 19 | 457453 | 457752 | - | NZ_CP042326.1 | Euhalothece natronophila Z-M001 |
| 20 | 409480 | 409794 | + | NZ_AP021881.1 | Sulfuriferula nivalis |
| 21 | 543729 | 544022 | - | NZ_CP029829.1 | Azospirillum ramasamyi |
| 22 | 123722 | 124015 | + | NZ_CP012401.1 | Azospirillum thiophilum |
| 23 | 3780723 | 3781016 | + | NC_019689.1 | Pleurocapsa sp. PCC 7327 |
| 24 | 235620 | 235928 | + | NC_002977.6 | Methylococcus capsulatus str. Bath |
| 25 | 1281720 | 1282004 | - | NZ_CP020470.1 | Rhodobacter blasticus |
| 26 | 2910562 | 2910867 | - | NZ_CP022423.1 | Vitreoscilla filiformis |
| 27 | 1707263 | 1707559 | + | NZ_CP030050.1 | Bradyrhizobium arachidis |
| 28 | 503997 | 504281 | + | NC_010627.1 | Paraburkholderia phymatum STM815 |
| 29 | 2456382 | 2456666 | - | NC_008781.1 | Polaromonas naphthalenivorans CJ2 |
| 30 | 3698530 | 3698823 | - | NZ_CP030265.1 | Skermanella pratensis |
| 31 | 3244719 | 3245006 | - | NZ_CP010836.1 | Sphingomonas hengshuiensis |
| 32 | 3239278 | 3239583 | - | NZ_CP011930.1 | Herbaspirillum seropedicae |
| 33 | 2766816 | 2767121 | - | NZ_CP013737.1 | Herbaspirillum rubrisubalbicans M1 |
| 34 | 1811148 | 1811429 | + | NZ_CP029353.1 | Azospirillum thermophilum |
| 35 | 565772 | 566083 | + | NZ_CP019240.1 | Rhodoferax antarcticus |
| 36 | 2132520 | 2132819 | + | NZ_CP022221.1 | Bradyrhizobium zhanjiangense |
| 37 | 632251 | 632520 | - | NC_010814.1 | Geobacter lovleyi SZ |
| 38 | 942170 | 942451 | - | NZ_AP022853.1 | Sulfurimicrobium lacus |
| 39 | 7137003 | 7137299 | - | NZ_LS398110.1 | Bradyrhizobium vignae |
| 40 | 1439849 | 1440157 | + | NC_010524.1 | Leptothrix cholodnii SP-6 |
| 41 | 2297798 | 2298091 | + | NZ_CP054619.1 | Azospirillum oryzae |
| 42 | 2609176 | 2609487 | - | NZ_CP017562.1 | Paraburkholderia sprentiae WSM5005 |
| 43 | 1754185 | 1754490 | - | NC_007952.1 | Paraburkholderia xenovorans LB400 |
| 44 | 3185854 | 3186093 | + | NZ_CP015421.1 | Rhodovulum sulfidophilum |
| 45 | 657102 | 657407 | - | NZ_CP022991.1 | Paraburkholderia aromaticivorans |
| 46 | 5734095 | 5734394 | - | NZ_CP016428.1 | Bradyrhizobium icense |
| 47 | 4183515 | 4183754 | + | NZ_CP043929.1 | Methylomonas rhizoryzae |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_011761.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF05082.15 | 0.63 | 29 | 26 | same-strand | Rop-like |
| 2 | PF03270.15 | 0.61 | 28 | 247.0 | same-strand | Protein of unknown function, DUF269 |
| 3 | PF02579.19 | 0.65 | 30 | 720 | same-strand | Dinitrogenase iron-molybdenum cofactor |
| 4 | PF00148.21 | 0.63 | 29 | 1323 | same-strand | Nitrogenase component 1 type Oxidoreductase |
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