Protein Information |
Information Type | Description |
---|---|
Protein name | Uncharacterized protein YwjC |
NCBI Accession ID | Z49782.1 |
Organism | Bacillus subtilis (strain 168) |
Left | 2602 |
Right | 2874 |
Strand | - |
Nucleotide Sequence | ATGAAAAATATCAAGTCTCTGAAAGTAGCCGCACAGGCCTTTACTTTAAGAAATTTGATTCATCTTTATAAAATGTGCCATTCCGGAAGCCACGAGGTTTATATTTATTCAAAGAAAACGATGTGCAAAATCAAAAGCTTAATTGAGCTTGAAACGTTCCGCATGGCTCATAATGAAAAGGAATATCTGATCGTAGTTGAAGGAACAAAAGCATCACAGCTCATTGAAAAATTCCAAAATCTCATCGAGCCTGCTGAGAGAGAAGCGCTCTAA |
Sequence | MKNIKSLKVAAQAFTLRNLIHLYKMCHSGSHEVYIYSKKTMCKIKSLIELETFRMAHNEKEYLIVVEGTKASQLIEKFQNLIEPAEREAL |
Source of smORF | Swiss-Prot |
Function | |
Pubmed ID | 9353933 9384377 |
Domain | |
Functional Category | Others |
Uniprot ID | P45863 |
ORF Length (Amino Acid) | 90 |
Conservation Analysis |
Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
---|---|---|---|---|---|
1 | 3818906 | 3819178 | + | NC_000964.3 | Bacillus subtilis subsp. subtilis str. 168 |
2 | 2419853 | 2420125 | - | NZ_CP029364.1 | Bacillus halotolerans |
3 | 3646033 | 3646305 | + | NZ_CP034943.1 | Bacillus subtilis subsp. spizizenii ATCC 6633 = JCM 2499 |
4 | 3708142 | 3708414 | + | NZ_CP013984.1 | Bacillus inaquosorum |
5 | 3633359 | 3633631 | + | NZ_CP051464.1 | Bacillus mojavensis |
6 | 3691247 | 3691519 | + | NZ_CP033052.1 | Bacillus vallismortis |
7 | 3651606 | 3651878 | + | NZ_CP048852.1 | Bacillus tequilensis |
8 | 369451 | 369723 | - | NZ_CP011937.1 | Bacillus velezensis |
9 | 3676471 | 3676743 | + | NZ_CP053376.1 | Bacillus amyloliquefaciens |
10 | 4004352 | 4004618 | + | NZ_CP023665.1 | Bacillus paralicheniformis |
11 | 3798290 | 3798556 | + | NC_006270.3 | Bacillus licheniformis DSM 13 = ATCC 14580 |
12 | 1921013 | 1921267 | - | NZ_CP043404.1 | Bacillus safensis |
13 | 4228828 | 4229094 | + | NZ_LT603683.1 | Bacillus glycinifermentans |
14 | 3373011 | 3373265 | + | NZ_CP011150.1 | Bacillus altitudinis |
15 | 1982559 | 1982813 | - | NZ_CP017786.1 | Bacillus xiamenensis |
Neighborhood Conservation Analysis |
Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
---|---|---|---|---|---|---|
1 | PF05066.15 | 0.6 | 9 | 5844 | opposite-strand | HB1, ASXL, restriction endonuclease HTH domain |
2 | PF00441.26 | 0.67 | 10 | 4524 | opposite-strand | Acyl-CoA dehydrogenase, C-terminal domain |
3 | PF02771.18 | 0.67 | 10 | 4524 | opposite-strand | Acyl-CoA dehydrogenase, N-terminal domain |
4 | PF08028.13 | 0.67 | 10 | 4524 | opposite-strand | Acyl-CoA dehydrogenase, C-terminal domain |
5 | PF02770.21 | 0.67 | 10 | 4524 | opposite-strand | Acyl-CoA dehydrogenase, middle domain |
6 | PF02754.18 | 1.0 | 15 | 2392 | opposite-strand | Cysteine-rich domain |
7 | PF13183.8 | 1.0 | 15 | 2392 | opposite-strand | 4Fe-4S dicluster domain |
8 | PF12838.9 | 0.8 | 12 | 2407.0 | opposite-strand | 4Fe-4S dicluster domain |
9 | PF13187.8 | 1.0 | 15 | 2392 | opposite-strand | 4Fe-4S dicluster domain |
10 | PF13237.8 | 1.0 | 15 | 2399.5 | opposite-strand | 4Fe-4S dicluster domain |
11 | PF13091.8 | 0.93 | 14 | 1056.0 | same-strand | PLD-like domain |
12 | PF00614.24 | 0.93 | 14 | 1056.0 | same-strand | Phospholipase D Active site motif |
13 | PF03851.16 | 0.8 | 12 | 81.0 | same-strand | UV-endonuclease UvdE |
14 | PF00664.25 | 0.73 | 11 | 576 | opposite-strand | ABC transporter transmembrane region |
15 | PF00005.29 | 0.73 | 11 | 576 | opposite-strand | ABC transporter |
16 | PF13396.8 | 0.8 | 12 | 2392.0 | opposite-strand | Phospholipase D-nuclease N-terminal |
17 | PF02665.16 | 0.6 | 9 | 4548 | opposite-strand | Nitrate reductase gamma subunit |