Result : P45807
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | Uncharacterized protein YbaM |
| NCBI Accession ID | U82664.1 |
| Organism | Escherichia coli (strain K12) |
| Left | 69558 |
| Right | 69719 |
| Strand | - |
| Nucleotide Sequence | ATGTCACTGGAAAATGCCCCTGACGATGTCAAACTGGCTGTCGATTTGATTGTGCTGCTGGAGGAAAATCAGATCCCTGCCAGTACCGTGCTGCGCGCGCTGGATATTGTAAAGCGTGATTATGAAAAGAAATTAACGCGCGATGATGAGGCGGAAAAGTGA |
| Sequence | MSLENAPDDVKLAVDLIVLLEENQIPASTVLRALDIVKRDYEKKLTRDDEAEK |
| Source of smORF | Swiss-Prot |
| Function | The ORF matches to the profile of cl26496. Profile Description: Protein of unknown function (DUF2496). hypothetical protein; Provisional |
| Pubmed ID | 1856227 9278503 16738553 7567469 |
| Domain | CDD:421325 |
| Functional Category | Others |
| Uniprot ID | P45807 |
| ORF Length (Amino Acid) | 53 |
++ More..
| Conservation Analysis |
No. of Species: 188
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 490110 | 490271 | - | NC_000913.3 | Escherichia coli str. K-12 substr. MG1655 |
| 2 | 426641 | 426802 | - | NC_004337.2 | Shigella flexneri 2a str. 301 |
| 3 | 508104 | 508271 | - | NZ_AP014857.1 | Escherichia albertii |
| 4 | 1134986 | 1135153 | - | NZ_LR134340.1 | Escherichia marmotae |
| 5 | 1597959 | 1598123 | + | NZ_CP057657.1 | Escherichia fergusonii |
| 6 | 3170279 | 3170443 | - | NZ_CP061527.1 | Shigella dysenteriae |
| 7 | 556003 | 556167 | - | NC_002695.2 | Escherichia coli O157:H7 str. Sakai |
| 8 | 2487101 | 2487268 | + | NC_009792.1 | Citrobacter koseri ATCC BAA-895 |
| 9 | 4241793 | 4241969 | + | NZ_CP046672.1 | Raoultella ornithinolytica |
| 10 | 585378 | 585545 | - | NC_013716.1 | Citrobacter rodentium ICC168 |
| 11 | 4008217 | 4008393 | + | NZ_CP041247.1 | Raoultella electrica |
| 12 | 3000201 | 3000377 | - | NZ_CP026047.1 | Raoultella planticola |
| 13 | 538938 | 539105 | - | NC_003197.2 | Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 |
| 14 | 3070392 | 3070559 | - | NZ_CP053416.1 | Salmonella bongori |
| 15 | 4645963 | 4646136 | + | NZ_CP060111.1 | Klebsiella michiganensis |
| 16 | 4410219 | 4410380 | + | NZ_CP045205.1 | Citrobacter telavivensis |
| 17 | 1120374 | 1120535 | + | NZ_CP044098.1 | Citrobacter portucalensis |
| 18 | 3995282 | 3995443 | - | NZ_CP033744.1 | Citrobacter freundii |
| 19 | 2157207 | 2157356 | + | NZ_CP038469.1 | Citrobacter tructae |
| 20 | 2702055 | 2702216 | - | NZ_LT556085.1 | Citrobacter amalonaticus |
| 21 | 1108622 | 1108795 | - | NZ_CP027986.1 | Enterobacter sichuanensis |
| 22 | 3960082 | 3960255 | + | NZ_CP065838.1 | Klebsiella quasipneumoniae |
| 23 | 2461749 | 2461907 | + | NZ_CP045769.1 | Enterobacter cancerogenus |
| 24 | 1103338 | 1103496 | - | NZ_LN907827.1 | Erwinia gerundensis |
| 25 | 1141371 | 1141541 | - | NZ_CP009756.1 | Enterobacter cloacae |
| 26 | 3626786 | 3626944 | - | NZ_AP019007.1 | Enterobacter oligotrophicus |
| 27 | 4227808 | 4227981 | + | NZ_CP054254.1 | Klebsiella variicola |
| 28 | 2941925 | 2942080 | + | NC_017910.1 | Shimwellia blattae DSM 4481 = NBRC 105725 |
| 29 | 333180 | 333350 | + | NZ_CP047495.1 | Pectobacterium brasiliense |
| 30 | 1012684 | 1012836 | - | NZ_CP034148.1 | Pantoea agglomerans |
| 31 | 3040753 | 3040905 | + | NZ_CP038853.1 | Pantoea vagans |
| 32 | 1187441 | 1187599 | - | NZ_CP012871.1 | [Enterobacter] lignolyticus |
| 33 | 3105659 | 3105811 | + | NZ_CP045720.1 | Pantoea eucalypti |
| 34 | 3681955 | 3682113 | + | NZ_CP013990.1 | Leclercia adecarboxylata |
| 35 | 1211442 | 1211606 | - | NC_014306.1 | Erwinia billingiae Eb661 |
| 36 | 143206 | 143376 | - | NZ_CP017482.1 | Pectobacterium polaris |
| 37 | 1062879 | 1063025 | - | NC_015968.1 | Enterobacter soli |
| 38 | 3490090 | 3490248 | + | NZ_CP054058.1 | Scandinavium goeteborgense |
| 39 | 2783982 | 2784131 | + | NC_010694.1 | Erwinia tasmaniensis Et1/99 |
| 40 | 1158159 | 1158329 | - | NZ_CP015581.1 | Tatumella citrea |
| 41 | 1058879 | 1059022 | - | NZ_CP015113.1 | Kosakonia radicincitans |
| 42 | 1624442 | 1624594 | + | NZ_LS483250.1 | Moritella yayanosii |
| 43 | 1115570 | 1115719 | - | NZ_CP023567.1 | Erwinia pyrifoliae |
| 44 | 3535243 | 3535413 | + | NZ_CP051652.1 | Pectobacterium carotovorum |
| 45 | 4056187 | 4056330 | + | NZ_CP014007.2 | Kosakonia oryzae |
| 46 | 361163 | 361318 | + | NZ_CP019706.1 | Pantoea alhagi |
| 47 | 3435431 | 3435586 | + | NC_017554.1 | Pantoea ananatis PA13 |
| 48 | 4592919 | 4593071 | + | NZ_CP051548.1 | Phytobacter diazotrophicus |
| 49 | 3459215 | 3459376 | + | NZ_CP035129.1 | Kosakonia cowanii |
| 50 | 1337685 | 1337864 | - | NZ_CP038498.1 | Pectobacterium punjabense |
| 51 | 3947391 | 3947546 | - | NZ_CP049115.1 | Pantoea stewartii |
| 52 | 1853743 | 1853886 | + | NZ_CP045300.1 | Kosakonia arachidis |
| 53 | 1100667 | 1100831 | - | NC_012779.2 | Edwardsiella ictaluri 93-146 |
| 54 | 1159158 | 1159310 | - | NZ_CP012257.1 | Cronobacter universalis NCTC 9529 |
| 55 | 1088599 | 1088748 | - | NC_013961.1 | Erwinia amylovora CFBP1430 |
| 56 | 1395713 | 1395883 | - | NZ_CP034938.1 | Pectobacterium odoriferum |
| 57 | 1119863 | 1120021 | - | NZ_CP023525.1 | Cedecea neteri |
| 58 | 2378569 | 2378733 | + | NZ_CP044399.1 | Moritella marina ATCC 15381 |
| 59 | 2065276 | 2065431 | + | NZ_CP040449.1 | Aeromonas simiae |
| 60 | 2740401 | 2740562 | + | NZ_CP009888.1 | Pseudoalteromonas piratica |
| 61 | 1236982 | 1237137 | - | NZ_CP061511.1 | Mixta calida |
| 62 | 3363325 | 3363477 | + | NZ_CP011602.1 | Phytobacter ursingii |
| 63 | 1309444 | 1309614 | - | NZ_CP009125.1 | Pectobacterium atrosepticum |
| 64 | 573554 | 573718 | + | NZ_CP042941.1 | Atlantibacter hermannii |
| 65 | 657153 | 657311 | + | NZ_CP023706.1 | Edwardsiella tarda |
| 66 | 1072972 | 1073130 | - | NZ_LR134201.1 | Cedecea lapagei |
| 67 | 1891985 | 1892140 | + | NZ_CP016337.1 | Kosakonia sacchari |
| 68 | 1170130 | 1170285 | - | NZ_CP063425.1 | Kosakonia pseudosacchari |
| 69 | 3214135 | 3214314 | - | NZ_CP015750.1 | Pectobacterium wasabiae CFBP 3304 |
| 70 | 2876658 | 2876810 | + | NZ_CP012268.1 | Cronobacter muytjensii ATCC 51329 |
| 71 | 1172902 | 1173081 | - | NZ_LR134494.1 | Serratia quinivorans |
| 72 | 578147 | 578326 | - | NZ_CP015749.1 | Pectobacterium parmentieri |
| 73 | 1206175 | 1206339 | - | NZ_CP013187.1 | Pseudoalteromonas phenolica |
| 74 | 2432746 | 2432907 | - | NZ_CP040428.1 | Jejubacter calystegiae |
| 75 | 1309349 | 1309504 | - | NZ_CP026377.1 | Mixta gaviniae |
| 76 | 479866 | 480024 | - | NZ_CP028271.1 | Mixta intestinalis |
| 77 | 3436666 | 3436824 | + | NZ_CP045845.1 | Kluyvera intermedia |
| 78 | 1100651 | 1100830 | - | NZ_CP048784.1 | Serratia liquefaciens |
| 79 | 591500 | 591655 | - | NZ_CP065745.1 | Aeromonas allosaccharophila |
| 80 | 2349096 | 2349251 | - | NZ_CP026364.1 | Proteus hauseri |
| 81 | 2649851 | 2650027 | - | NZ_CP065640.1 | Serratia rubidaea |
| 82 | 2631985 | 2632143 | + | NZ_CP016043.1 | Edwardsiella hoshinae |
| 83 | 3423799 | 3423954 | + | NZ_AP023184.1 | Buttiauxella agrestis |
| 84 | 1373932 | 1374093 | - | NC_015276.1 | Marinomonas mediterranea MMB-1 |
| 85 | 2995544 | 2995708 | + | NZ_CP042220.2 | Dickeya poaceiphila |
| 86 | 250951 | 251112 | + | NZ_CP014056.2 | Grimontia hollisae |
| 87 | 777535 | 777702 | + | NZ_CP041660.1 | Catenovulum sediminis |
| 88 | 3259834 | 3259989 | - | NZ_CP011078.1 | Yersinia ruckeri |
| 89 | 2561262 | 2561420 | + | NZ_CP034752.1 | Jinshanibacter zhutongyuii |
| 90 | 2974269 | 2974421 | + | NZ_CP013940.1 | Cronobacter malonaticus LMG 23826 |
| 91 | 1381506 | 1381679 | + | NZ_CP014136.1 | Gibbsiella quercinecans |
| 92 | 2267098 | 2267250 | + | NZ_CP027107.1 | Cronobacter sakazakii |
| 93 | 1370405 | 1370563 | - | NZ_CP032090.1 | Pseudoalteromonas donghaensis |
| 94 | 2911658 | 2911825 | + | NZ_CP014137.1 | Brenneria goodwinii |
| 95 | 715105 | 715272 | - | NZ_CP011104.1 | Photorhabdus thracensis |
| 96 | 1288541 | 1288723 | - | NC_014500.1 | Dickeya dadantii 3937 |
| 97 | 1030480 | 1030644 | - | NZ_CP034035.1 | Brenneria rubrifaciens |
| 98 | 4517401 | 4517568 | + | NC_005126.1 | Photorhabdus laumondii subsp. laumondii TTO1 |
| 99 | 3634331 | 3634501 | + | NZ_CP072455.1 | Xenorhabdus budapestensis |
| 100 | 4112848 | 4113009 | + | NZ_CP072425.1 | Pseudoalteromonas viridis |
| 101 | 1165796 | 1165975 | - | NC_015567.1 | Serratia plymuthica AS9 |
| 102 | 1163964 | 1164116 | - | NZ_CP012264.1 | Cronobacter condimenti 1330 |
| 103 | 2437621 | 2437785 | + | NZ_CP016176.1 | Xenorhabdus hominickii |
| 104 | 3469911 | 3470078 | + | NC_012912.1 | Dickeya chrysanthemi Ech1591 |
| 105 | 1269351 | 1269515 | - | NZ_CP031560.1 | Dickeya dianthicola |
| 106 | 1202850 | 1203020 | - | NZ_LS483470.1 | Leminorella richardii |
| 107 | 748313 | 748477 | - | NZ_CP047349.1 | Proteus terrae subsp. cibarius |
| 108 | 2400328 | 2400486 | + | NZ_CP029185.2 | Limnobaculum parvum |
| 109 | 3130523 | 3130678 | + | NZ_AP022188.1 | Aeromonas media |
| 110 | 335042 | 335197 | - | NZ_CP044060.1 | Aeromonas veronii |
| 111 | 2159508 | 2159672 | - | NZ_CP023009.1 | Lonsdalea britannica |
| 112 | 1513626 | 1513790 | + | NZ_CP009460.1 | Dickeya fangzhongdai |
| 113 | 57619 | 57780 | - | NZ_CP046793.1 | Vibrio metschnikovii |
| 114 | 1169602 | 1169754 | - | NZ_CP012266.1 | Cronobacter dublinensis subsp. dublinensis LMG 23823 |
| 115 | 1103423 | 1103587 | - | NZ_CP065534.1 | Lonsdalea populi |
| 116 | 3994065 | 3994241 | + | NC_012962.1 | Photorhabdus asymbiotica |
| 117 | 1228943 | 1229104 | - | NZ_CP025799.1 | Dickeya zeae |
| 118 | 1070237 | 1070410 | - | NZ_CP022355.1 | Paraphotobacterium marinum |
| 119 | 2297020 | 2297187 | + | NZ_CP044069.1 | Vibrio vulnificus |
| 120 | 1684473 | 1684631 | + | NZ_CP033078.1 | Vibrio zhugei |
| 121 | 2235256 | 2235408 | + | NZ_CP011030.1 | Pseudoalteromonas issachenkonii |
| 122 | 1146393 | 1146560 | + | NZ_LT960611.1 | Vibrio tapetis subsp. tapetis |
| 123 | 700877 | 701023 | - | NZ_CP017689.1 | Thalassotalea crassostreae |
| 124 | 2365373 | 2365525 | + | NZ_CP027523.1 | Pseudoalteromonas carrageenovora |
| 125 | 1962058 | 1962222 | + | NZ_CP011039.1 | Pseudoalteromonas spongiae UST010723-006 |
| 126 | 498419 | 498574 | - | NZ_CP021376.1 | Oceanisphaera avium |
| 127 | 2262356 | 2262508 | + | NZ_CP011041.1 | Pseudoalteromonas tetraodonis |
| 128 | 170958 | 171113 | - | NC_010554.1 | Proteus mirabilis HI4320 |
| 129 | 1258461 | 1258634 | - | NZ_CP005974.1 | Photobacterium gaetbulicola Gung47 |
| 130 | 3601682 | 3601843 | - | NC_009901.1 | Shewanella pealeana ATCC 700345 |
| 131 | 498652 | 498822 | - | NZ_FO704551.1 | Xenorhabdus poinarii G6 |
| 132 | 1268220 | 1268372 | - | NZ_CP011025.1 | Pseudoalteromonas arctica A 37-1-2 |
| 133 | 1161640 | 1161804 | - | NC_012880.1 | Musicola paradisiaca Ech703 |
| 134 | 2831752 | 2831907 | - | NZ_CP007230.1 | Yersinia similis |
| 135 | 3363713 | 3363868 | + | NZ_LR134373.1 | Yersinia pseudotuberculosis |
| 136 | 3134830 | 3134982 | - | NZ_CP019628.1 | Pseudoalteromonas aliena |
| 137 | 1145975 | 1146130 | - | NZ_CP046293.1 | Yersinia intermedia |
| 138 | 2678446 | 2678622 | + | NZ_CP031123.2 | Providencia huaxiensis |
| 139 | 917636 | 917812 | - | NZ_CP071325.1 | Photobacterium ganghwense |
| 140 | 3553957 | 3554121 | + | NZ_CP034036.1 | Brenneria nigrifluens DSM 30175 = ATCC 13028 |
| 141 | 914611 | 914775 | - | NZ_CP016414.1 | Vibrio scophthalmi |
| 142 | 4067517 | 4067672 | - | NZ_CP009787.1 | Yersinia rohdei |
| 143 | 2410266 | 2410427 | + | NZ_CP011036.1 | Pseudoalteromonas nigrifaciens |
| 144 | 849205 | 849381 | - | NZ_AP019657.1 | Vibrio ponticus |
| 145 | 3368170 | 3368334 | + | NZ_CP061941.1 | Marinomonas algicola |
| 146 | 2606221 | 2606385 | - | NZ_CP060401.1 | Xenorhabdus nematophila |
| 147 | 3497651 | 3497809 | - | NZ_CP072133.1 | Pseudoalteromonas xiamenensis |
| 148 | 1311827 | 1311979 | - | NZ_CP011028.1 | Pseudoalteromonas espejiana DSM 9414 |
| 149 | 3698740 | 3698901 | - | NC_010334.1 | Shewanella halifaxensis HAW-EB4 |
| 150 | 2445458 | 2445613 | - | NZ_CP054043.1 | Yersinia mollaretii ATCC 43969 |
| 151 | 2106148 | 2106309 | + | NC_007481.1 | Pseudoalteromonas translucida |
| 152 | 1864499 | 1864660 | + | NZ_AP019651.1 | Vibrio taketomensis |
| 153 | 1152224 | 1152388 | + | NZ_CP025792.1 | Vibrio jasicida 090810c |
| 154 | 1026992 | 1027162 | - | NZ_AP018689.1 | Vibrio aphrogenes |
| 155 | 1013665 | 1013829 | - | NZ_CP030788.1 | Vibrio campbellii |
| 156 | 2849613 | 2849762 | - | NC_015559.1 | Marinomonas posidonica IVIA-Po-181 |
| 157 | 1575337 | 1575501 | + | NC_013892.1 | Xenorhabdus bovienii SS-2004 |
| 158 | 3960123 | 3960299 | + | NZ_CP029736.1 | Providencia rettgeri |
| 159 | 1497830 | 1497985 | + | NZ_CP009781.1 | Yersinia aldovae 670-83 |
| 160 | 1251409 | 1251579 | - | NZ_CP009354.1 | Vibrio tubiashii ATCC 19109 |
| 161 | 3432190 | 3432345 | + | NZ_CP011118.1 | Yersinia enterocolitica |
| 162 | 2855787 | 2855942 | + | NZ_CP032487.1 | Yersinia hibernica |
| 163 | 1864220 | 1864375 | + | NZ_CP051883.1 | Aeromonas salmonicida |
| 164 | 305893 | 306057 | + | NZ_CP021377.1 | Oceanisphaera profunda |
| 165 | 1897089 | 1897250 | - | NZ_CP051180.1 | Ferrimonas lipolytica |
| 166 | 1220299 | 1220469 | - | NZ_CP048796.1 | Providencia vermicola |
| 167 | 2018020 | 2018184 | + | NZ_CP018312.1 | Vibrio rotiferianus |
| 168 | 1028904 | 1029041 | - | NZ_CP047475.1 | Vibrio astriarenae |
| 169 | 1837256 | 1837423 | + | NZ_CP009977.1 | Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759 |
| 170 | 1120040 | 1120210 | - | NC_011753.2 | Vibrio atlanticus |
| 171 | 1116991 | 1117161 | - | NZ_CP039700.1 | Vibrio cyclitrophicus |
| 172 | 315037 | 315207 | + | NZ_CP065150.1 | Vibrio kanaloae |
| 173 | 3415569 | 3415724 | + | NZ_CP043727.1 | Yersinia canariae |
| 174 | 1765169 | 1765324 | - | NZ_CP050851.1 | Aeromonas hydrophila |
| 175 | 2181413 | 2181580 | + | NZ_CP012621.1 | Zobellella denitrificans |
| 176 | 759385 | 759549 | + | NZ_CP019959.1 | Vibrio owensii |
| 177 | 2855750 | 2855917 | - | NZ_CP054301.1 | Marinomonas primoryensis |
| 178 | 1616346 | 1616507 | - | NZ_CP040990.1 | Vibrio furnissii |
| 179 | 4086310 | 4086474 | - | NZ_CP020472.1 | Shewanella japonica |
| 180 | 2607059 | 2607223 | + | NC_013456.1 | Vibrio antiquarius |
| 181 | 1691710 | 1691877 | + | NZ_AP018685.1 | Vibrio rumoiensis |
| 182 | 1048667 | 1048837 | - | NZ_CP022741.1 | Vibrio qinghaiensis |
| 183 | 2211272 | 2211436 | + | NZ_CP031781.1 | Vibrio parahaemolyticus |
| 184 | 3407764 | 3407913 | + | NZ_CP006569.1 | Sodalis praecaptivus |
| 185 | 1270936 | 1271097 | - | NZ_LR134531.1 | Pragia fontium |
| 186 | 1271219 | 1271377 | - | NZ_CP045350.1 | Vibrio aquimaris |
| 187 | 3800935 | 3801072 | - | NC_011566.1 | Shewanella piezotolerans WP3 |
| 188 | 1625819 | 1625986 | + | NZ_CP014035.2 | Vibrio fluvialis |
| 189 | 2501209 | 2501376 | + | NZ_CP070624.1 | Photobacterium damselae subsp. damselae |
++ More..
| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_000913.3
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF00873.21 | 0.63 | 118 | 5540 | same-strand | AcrB/AcrD/AcrF family |
| 2 | PF00529.22 | 0.64 | 121 | 4334.0 | same-strand | Cation efflux system protein CusB domain 1 |
| 3 | PF16576.7 | 0.65 | 122 | 4333 | same-strand | Barrel-sandwich domain of CusB or HlyD membrane-fusion |
| 4 | PF08361.13 | 0.62 | 116 | 3531 | opposite-strand | MAATS-type transcriptional repressor, C-terminal region |
| 5 | PF00440.25 | 0.64 | 121 | 3530.5 | opposite-strand | Bacterial regulatory proteins, tetR family |
| 6 | PF07445.14 | 0.86 | 162 | 23 | same-strand | Primosomal replication protein priC |
| 7 | PF12170.10 | 0.62 | 116 | 1821 | opposite-strand | DNA polymerase III tau subunit V interacting with alpha |
| 8 | PF13177.8 | 0.62 | 116 | 1821 | opposite-strand | DNA polymerase III, delta subunit |
| 9 | PF12169.10 | 0.62 | 116 | 1821 | opposite-strand | DNA polymerase III subunits gamma and tau domain III |
| 10 | PF12168.10 | 0.61 | 115 | 1821.0 | opposite-strand | DNA polymerase III subunits tau domain IV DnaB-binding |
| 11 | PF00004.31 | 0.62 | 117 | 1821 | opposite-strand | ATPase family associated with various cellular activities (AAA) |
++ More..