Result : P45795
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | Uncharacterized protein YrdB |
| NCBI Accession ID | U18997.1 |
| Organism | Escherichia coli (strain K12) |
| Left | 210512 |
| Right | 210769 |
| Strand | - |
| Nucleotide Sequence | GTGAATCAGGCCATCCAGTTTCCGGACAGGGAAGAGTGGGACGAGAATAAAAAATGTGTATGTTTTCCCGCTCTCGTGAATGGTATGCAACTGACATGCGCGATCTCTGGCGAGAGTCTGGCGTATCGCTTTACTGGAGATACGCCAGAACAGTGGTTAGCGAGTTTTCGTCAGCATCGCTGGGACCTGGAAGAAGAAGCGGAAAACTTAATTCAGGAACAAAGTGAAGATGATCAAGGCTGGGTCTGGTTACCCTGA |
| Sequence | MNQAIQFPDREEWDENKKCVCFPALVNGMQLTCAISGESLAYRFTGDTPEQWLASFRQHRWDLEEEAENLIQEQSEDDQGWVWLP |
| Source of smORF | Swiss-Prot |
| Function | The ORF matches to the profile of pfam07369. Profile Description: Protein of unknown function (DUF1488). This family consists of several hypothetical bacterial proteins of around 85 residues in length. The function of this family is unknown. |
| Pubmed ID | 9278503 16738553 |
| Domain | CDD:399977 |
| Functional Category | Others |
| Uniprot ID | P45795 |
| ORF Length (Amino Acid) | 85 |
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| Conservation Analysis |
No. of Species: 106
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 3429766 | 3430023 | - | NC_000913.3 | Escherichia coli str. K-12 substr. MG1655 |
| 2 | 395062 | 395319 | + | NZ_CP061527.1 | Shigella dysenteriae |
| 3 | 3412555 | 3412812 | - | NC_004337.2 | Shigella flexneri 2a str. 301 |
| 4 | 4164906 | 4165163 | - | NC_002695.2 | Escherichia coli O157:H7 str. Sakai |
| 5 | 2351057 | 2351314 | - | NZ_CP057657.1 | Escherichia fergusonii |
| 6 | 3405773 | 3406030 | - | NZ_AP014857.1 | Escherichia albertii |
| 7 | 3932944 | 3933201 | - | NZ_LR134340.1 | Escherichia marmotae |
| 8 | 1676129 | 1676386 | + | NZ_LT556085.1 | Citrobacter amalonaticus |
| 9 | 4328113 | 4328370 | - | NC_009792.1 | Citrobacter koseri ATCC BAA-895 |
| 10 | 1233997 | 1234254 | - | NZ_CP026047.1 | Raoultella planticola |
| 11 | 4780450 | 4780707 | + | NC_013716.1 | Citrobacter rodentium ICC168 |
| 12 | 2850845 | 2851102 | + | NZ_CP044098.1 | Citrobacter portucalensis |
| 13 | 482508 | 482765 | + | NZ_CP046672.1 | Raoultella ornithinolytica |
| 14 | 3818359 | 3818616 | + | NZ_CP027107.1 | Cronobacter sakazakii |
| 15 | 4157395 | 4157652 | - | NZ_CP012871.1 | [Enterobacter] lignolyticus |
| 16 | 2674330 | 2674587 | - | NZ_CP016337.1 | Kosakonia sacchari |
| 17 | 4424393 | 4424650 | - | NZ_CP063425.1 | Kosakonia pseudosacchari |
| 18 | 99586 | 99843 | + | NZ_CP012268.1 | Cronobacter muytjensii ATCC 51329 |
| 19 | 2231771 | 2232028 | - | NZ_CP033744.1 | Citrobacter freundii |
| 20 | 245614 | 245871 | + | NZ_CP013940.1 | Cronobacter malonaticus LMG 23826 |
| 21 | 3868063 | 3868320 | - | NZ_CP012257.1 | Cronobacter universalis NCTC 9529 |
| 22 | 444170 | 444427 | + | NZ_CP041247.1 | Raoultella electrica |
| 23 | 6178 | 6435 | - | NZ_CP045205.1 | Citrobacter telavivensis |
| 24 | 3580281 | 3580538 | + | NZ_CP045300.1 | Kosakonia arachidis |
| 25 | 3573019 | 3573276 | - | NC_003197.2 | Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 |
| 26 | 3849223 | 3849480 | + | NZ_CP038469.1 | Citrobacter tructae |
| 27 | 472621 | 472878 | + | NZ_CP014007.2 | Kosakonia oryzae |
| 28 | 410932 | 411189 | + | NZ_CP054058.1 | Scandinavium goeteborgense |
| 29 | 445738 | 445995 | + | NZ_CP050508.1 | Raoultella terrigena |
| 30 | 4851363 | 4851620 | - | NZ_CP015113.1 | Kosakonia radicincitans |
| 31 | 4035310 | 4035567 | - | NZ_CP012266.1 | Cronobacter dublinensis subsp. dublinensis LMG 23823 |
| 32 | 1423145 | 1423402 | - | NZ_CP053416.1 | Salmonella bongori |
| 33 | 3945428 | 3945685 | - | NZ_CP012264.1 | Cronobacter condimenti 1330 |
| 34 | 443598 | 443855 | + | NZ_CP065838.1 | Klebsiella quasipneumoniae |
| 35 | 447402 | 447659 | + | NZ_LR134475.1 | Klebsiella aerogenes |
| 36 | 526286 | 526543 | + | NZ_CP060111.1 | Klebsiella michiganensis |
| 37 | 4847377 | 4847634 | - | NC_016845.1 | Klebsiella pneumoniae subsp. pneumoniae HS11286 |
| 38 | 999975 | 1000232 | + | NZ_CP051548.1 | Phytobacter diazotrophicus |
| 39 | 453134 | 453391 | + | NZ_CP054254.1 | Klebsiella variicola |
| 40 | 426986 | 427243 | + | NZ_CP035129.1 | Kosakonia cowanii |
| 41 | 255078 | 255335 | + | NZ_CP023525.1 | Cedecea neteri |
| 42 | 4273401 | 4273649 | - | NZ_CP017184.1 | Enterobacter roggenkampii |
| 43 | 3026176 | 3026424 | + | NZ_CP025034.2 | Enterobacter sp. SGAir0187 |
| 44 | 2006318 | 2006566 | - | NZ_AP019007.1 | Enterobacter oligotrophicus |
| 45 | 4377414 | 4377662 | - | NZ_CP009756.1 | Enterobacter cloacae |
| 46 | 4247503 | 4247754 | + | NZ_CP028271.1 | Mixta intestinalis |
| 47 | 259593 | 259850 | + | NZ_LR134201.1 | Cedecea lapagei |
| 48 | 4609517 | 4609765 | - | NZ_CP043318.1 | Enterobacter chengduensis |
| 49 | 4180480 | 4180728 | - | NZ_AP022508.1 | Enterobacter bugandensis |
| 50 | 332282 | 332539 | + | NC_017910.1 | Shimwellia blattae DSM 4481 = NBRC 105725 |
| 51 | 5160903 | 5161160 | + | NZ_CP011602.1 | Phytobacter ursingii |
| 52 | 4073257 | 4073505 | + | NZ_CP045769.1 | Enterobacter cancerogenus |
| 53 | 565430 | 565687 | + | NZ_CP036175.1 | Klebsiella huaxiensis |
| 54 | 2835958 | 2836206 | - | NZ_CP017279.1 | Enterobacter ludwigii |
| 55 | 480277 | 480534 | + | NZ_CP045845.1 | Kluyvera intermedia |
| 56 | 4254465 | 4254713 | - | NZ_CP027986.1 | Enterobacter sichuanensis |
| 57 | 690069 | 690320 | - | NZ_CP040428.1 | Jejubacter calystegiae |
| 58 | 2974993 | 2975241 | - | NZ_CP023529.1 | Lelliottia amnigena |
| 59 | 1166631 | 1166879 | - | NZ_CP019706.1 | Pantoea alhagi |
| 60 | 498559 | 498810 | + | NZ_CP026377.1 | Mixta gaviniae |
| 61 | 468418 | 468666 | + | NZ_CP013990.1 | Leclercia adecarboxylata |
| 62 | 2137074 | 2137331 | + | NZ_CP042941.1 | Atlantibacter hermannii |
| 63 | 4287865 | 4288113 | - | NC_015968.1 | Enterobacter soli |
| 64 | 442375 | 442635 | + | NZ_LN907827.1 | Erwinia gerundensis |
| 65 | 423951 | 424202 | + | NZ_CP061511.1 | Mixta calida |
| 66 | 4819444 | 4819701 | + | NZ_CP014137.1 | Brenneria goodwinii |
| 67 | 4567802 | 4568053 | - | NC_014306.1 | Erwinia billingiae Eb661 |
| 68 | 1201004 | 1201252 | + | NZ_CP020388.1 | Pluralibacter gergoviae |
| 69 | 1115964 | 1116221 | - | NZ_CP015750.1 | Pectobacterium wasabiae CFBP 3304 |
| 70 | 414343 | 414600 | + | NZ_AP023184.1 | Buttiauxella agrestis |
| 71 | 4384160 | 4384417 | - | NZ_CP009125.1 | Pectobacterium atrosepticum |
| 72 | 4755494 | 4755751 | + | NZ_CP015749.1 | Pectobacterium parmentieri |
| 73 | 126418 | 126675 | + | NZ_CP015581.1 | Tatumella citrea |
| 74 | 3591683 | 3591940 | - | NZ_CP034148.1 | Pantoea agglomerans |
| 75 | 499221 | 499478 | + | NZ_CP051652.1 | Pectobacterium carotovorum |
| 76 | 4214255 | 4214512 | - | NZ_CP038498.1 | Pectobacterium punjabense |
| 77 | 2157442 | 2157699 | + | NZ_CP047495.1 | Pectobacterium brasiliense |
| 78 | 479653 | 479910 | + | NZ_CP045720.1 | Pantoea eucalypti |
| 79 | 3187492 | 3187749 | - | NZ_CP017482.1 | Pectobacterium polaris |
| 80 | 489759 | 490016 | + | NZ_CP038853.1 | Pantoea vagans |
| 81 | 3507334 | 3507594 | - | NC_010694.1 | Erwinia tasmaniensis Et1/99 |
| 82 | 2427793 | 2428050 | - | NZ_CP049115.1 | Pantoea stewartii |
| 83 | 4374696 | 4374953 | - | NZ_CP034938.1 | Pectobacterium odoriferum |
| 84 | 507639 | 507896 | + | NZ_CP034036.1 | Brenneria nigrifluens DSM 30175 = ATCC 13028 |
| 85 | 3460462 | 3460722 | - | NC_013961.1 | Erwinia amylovora CFBP1430 |
| 86 | 477940 | 478197 | + | NC_017554.1 | Pantoea ananatis PA13 |
| 87 | 540629 | 540886 | + | NZ_CP065044.1 | Pectobacterium aroidearum |
| 88 | 335800 | 336060 | + | NZ_CP023567.1 | Erwinia pyrifoliae |
| 89 | 4851489 | 4851749 | - | NC_012962.1 | Photorhabdus asymbiotica |
| 90 | 3337208 | 3337477 | + | NZ_CP009460.1 | Dickeya fangzhongdai |
| 91 | 1625350 | 1625619 | - | NZ_CP015137.1 | Dickeya solani IPO 2222 |
| 92 | 5475915 | 5476178 | - | NC_005126.1 | Photorhabdus laumondii subsp. laumondii TTO1 |
| 93 | 4405522 | 4405791 | - | NZ_CP031560.1 | Dickeya dianthicola |
| 94 | 4368643 | 4368912 | - | NC_014500.1 | Dickeya dadantii 3937 |
| 95 | 495506 | 495775 | + | NZ_CP042220.2 | Dickeya poaceiphila |
| 96 | 4169785 | 4170054 | - | NZ_CP072455.1 | Xenorhabdus budapestensis |
| 97 | 1664094 | 1664354 | - | NZ_CP011104.1 | Photorhabdus thracensis |
| 98 | 4168722 | 4168994 | - | NZ_CP025799.1 | Dickeya zeae |
| 99 | 3143615 | 3143884 | - | NZ_CP016176.1 | Xenorhabdus hominickii |
| 100 | 728465 | 728719 | - | NZ_CP023009.1 | Lonsdalea britannica |
| 101 | 293366 | 293635 | + | NZ_FO704550.1 | Xenorhabdus doucetiae |
| 102 | 3467740 | 3468009 | - | NZ_FO704551.1 | Xenorhabdus poinarii G6 |
| 103 | 4236174 | 4236434 | - | NZ_CP050150.1 | Hafnia alvei |
| 104 | 3147993 | 3148265 | - | NZ_CP060401.1 | Xenorhabdus nematophila |
| 105 | 4084499 | 4084774 | - | NZ_LS483422.1 | Providencia heimbachae |
| 106 | 1211855 | 1212115 | + | NZ_CP023536.1 | Providencia alcalifaciens |
| 107 | 4078921 | 4079181 | - | NZ_CP048796.1 | Providencia vermicola |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_000913.3
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF00132.26 | 1.0 | 106 | -24 | opposite-strand | Bacterial transferase hexapeptide (six repeats) |
| 2 | PF14602.8 | 0.75 | 80 | -24 | opposite-strand | Hexapeptide repeat of succinyl-transferase |
| 3 | PF08501.13 | 0.99 | 105 | -3.0 | same-strand | Shikimate dehydrogenase substrate binding domain |
| 4 | PF18317.3 | 0.97 | 103 | -3.0 | same-strand | Shikimate 5'-dehydrogenase C-terminal domain |
| 5 | PF01300.20 | 1.0 | 106 | 820 | same-strand | Telomere recombination |
| 6 | PF01396.21 | 0.97 | 103 | 1389.0 | same-strand | Topoisomerase DNA binding C4 zinc finger |
| 7 | PF04361.15 | 0.9 | 95 | 1966.0 | same-strand | Protein of unknown function (DUF494) |
| 8 | PF02481.17 | 0.99 | 105 | 2411.0 | same-strand | DNA recombination-mediator protein A |
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