Result : P45566
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | Uncharacterized membrane protein YhdT |
| NCBI Accession ID | U18997.1 |
| Organism | Escherichia coli (strain K12) |
| Left | 188120 |
| Right | 188362 |
| Strand | + |
| Nucleotide Sequence | ATGGACACTCGTTTTGTTCAGGCCCATAAAGAGGCGCGCTGGGCGCTGGGGCTGACCCTTTTGTATCTGGCAGTTTGGTTAGTAGCCGCTTACTTATCTGGCGTTGCCCCCGGTTTTACCGGCTTTCCGCGCTGGTTTGAGATGGCCTGCATCCTGACGCCGCTGCTGTTTATTGGACTGTGCTGGGCGATGGTGAAATTTATCTATCGCGATATCCCACTGGAGGATGACGATGCAGCTTGA |
| Sequence | MDTRFVQAHKEARWALGLTLLYLAVWLVAAYLSGVAPGFTGFPRWFEMACILTPLLFIGLCWAMVKFIYRDIPLEDDDAA |
| Source of smORF | Swiss-Prot |
| Function | The ORF matches to the profile of cl01614. Profile Description: Protein of unknown function (DUF997). hypothetical protein; Provisional |
| Pubmed ID | 2193919 9278503 16738553 25346166 |
| Domain | CDD:412986 |
| Functional Category | Others |
| Uniprot ID | P45566 |
| ORF Length (Amino Acid) | 80 |
++ More..
| Conservation Analysis |
No. of Species: 152
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 3407375 | 3407617 | + | NC_000913.3 | Escherichia coli str. K-12 substr. MG1655 |
| 2 | 416080 | 416322 | - | NZ_CP061527.1 | Shigella dysenteriae |
| 3 | 2328748 | 2328990 | + | NZ_CP057657.1 | Escherichia fergusonii |
| 4 | 4142463 | 4142705 | + | NC_002695.2 | Escherichia coli O157:H7 str. Sakai |
| 5 | 3387486 | 3387728 | + | NZ_AP014857.1 | Escherichia albertii |
| 6 | 3910718 | 3910960 | + | NZ_LR134340.1 | Escherichia marmotae |
| 7 | 3394946 | 3395188 | + | NC_004337.2 | Shigella flexneri 2a str. 301 |
| 8 | 4804167 | 4804409 | - | NC_013716.1 | Citrobacter rodentium ICC168 |
| 9 | 4304959 | 4305201 | + | NC_009792.1 | Citrobacter koseri ATCC BAA-895 |
| 10 | 1401908 | 1402150 | + | NZ_CP053416.1 | Salmonella bongori |
| 11 | 5428328 | 5428570 | + | NZ_CP045205.1 | Citrobacter telavivensis |
| 12 | 3552041 | 3552283 | + | NC_003197.2 | Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 |
| 13 | 2874196 | 2874438 | - | NZ_CP044098.1 | Citrobacter portucalensis |
| 14 | 435315 | 435557 | - | NZ_CP054058.1 | Scandinavium goeteborgense |
| 15 | 1018596 | 1018838 | - | NZ_CP051548.1 | Phytobacter diazotrophicus |
| 16 | 3597063 | 3597305 | - | NZ_CP045300.1 | Kosakonia arachidis |
| 17 | 491203 | 491445 | - | NZ_CP014007.2 | Kosakonia oryzae |
| 18 | 4832815 | 4833057 | + | NZ_CP015113.1 | Kosakonia radicincitans |
| 19 | 3050582 | 3050824 | - | NZ_CP025034.2 | Enterobacter sp. SGAir0187 |
| 20 | 4353906 | 4354148 | + | NZ_CP009756.1 | Enterobacter cloacae |
| 21 | 2208442 | 2208684 | + | NZ_CP033744.1 | Citrobacter freundii |
| 22 | 4585117 | 4585359 | + | NZ_CP043318.1 | Enterobacter chengduensis |
| 23 | 4153166 | 4153408 | - | NZ_CP017279.1 | Enterobacter ludwigii |
| 24 | 4156098 | 4156340 | + | NZ_AP022508.1 | Enterobacter bugandensis |
| 25 | 4097630 | 4097872 | - | NZ_CP045769.1 | Enterobacter cancerogenus |
| 26 | 4249009 | 4249251 | + | NZ_CP017184.1 | Enterobacter roggenkampii |
| 27 | 498830 | 499075 | - | NZ_CP045845.1 | Kluyvera intermedia |
| 28 | 2655393 | 2655635 | + | NZ_CP016337.1 | Kosakonia sacchari |
| 29 | 4405466 | 4405708 | + | NZ_CP063425.1 | Kosakonia pseudosacchari |
| 30 | 1983932 | 1984174 | + | NZ_AP019007.1 | Enterobacter oligotrophicus |
| 31 | 4230077 | 4230319 | + | NZ_CP027986.1 | Enterobacter sichuanensis |
| 32 | 5180737 | 5180979 | - | NZ_CP011602.1 | Phytobacter ursingii |
| 33 | 446192 | 446434 | - | NZ_CP035129.1 | Kosakonia cowanii |
| 34 | 3872528 | 3872770 | - | NZ_CP038469.1 | Citrobacter tructae |
| 35 | 344854 | 345096 | - | NC_017910.1 | Shimwellia blattae DSM 4481 = NBRC 105725 |
| 36 | 1810454 | 1810696 | + | NZ_CP011078.1 | Yersinia ruckeri |
| 37 | 2950432 | 2950674 | + | NZ_CP023529.1 | Lelliottia amnigena |
| 38 | 2159579 | 2159821 | - | NZ_CP042941.1 | Atlantibacter hermannii |
| 39 | 4136192 | 4136434 | + | NZ_CP012871.1 | [Enterobacter] lignolyticus |
| 40 | 1486221 | 1486463 | - | NZ_CP007044.2 | Chania multitudinisentens RB-25 |
| 41 | 537881 | 538123 | - | NZ_CP006569.1 | Sodalis praecaptivus |
| 42 | 678271 | 678513 | + | NZ_CP040428.1 | Jejubacter calystegiae |
| 43 | 4312043 | 4312285 | + | NC_012962.1 | Photorhabdus asymbiotica |
| 44 | 750001 | 750243 | + | NZ_CP054043.1 | Yersinia mollaretii ATCC 43969 |
| 45 | 2981713 | 2981955 | - | NZ_CP011104.1 | Photorhabdus thracensis |
| 46 | 4280906 | 4281148 | + | NZ_CP032487.1 | Yersinia hibernica |
| 47 | 1149757 | 1150014 | + | NZ_CP019706.1 | Pantoea alhagi |
| 48 | 492887 | 493132 | - | NZ_CP013990.1 | Leclercia adecarboxylata |
| 49 | 452869 | 453111 | - | NZ_CP011118.1 | Yersinia enterocolitica |
| 50 | 2798110 | 2798352 | + | NZ_CP060401.1 | Xenorhabdus nematophila |
| 51 | 3762663 | 3762905 | + | NZ_CP013940.1 | Cronobacter malonaticus LMG 23826 |
| 52 | 4772820 | 4773062 | + | NC_005126.1 | Photorhabdus laumondii subsp. laumondii TTO1 |
| 53 | 1699808 | 1700050 | - | NZ_LT556085.1 | Citrobacter amalonaticus |
| 54 | 305102 | 305344 | - | NZ_CP046293.1 | Yersinia intermedia |
| 55 | 1111680 | 1111922 | + | NZ_CP007230.1 | Yersinia similis |
| 56 | 441510 | 441752 | - | NZ_LR134373.1 | Yersinia pseudotuberculosis |
| 57 | 4219402 | 4219644 | + | NZ_CP043727.1 | Yersinia canariae |
| 58 | 3671784 | 3672026 | - | NC_013892.1 | Xenorhabdus bovienii SS-2004 |
| 59 | 4246513 | 4246755 | + | NC_015968.1 | Enterobacter soli |
| 60 | 3432252 | 3432497 | + | NZ_LR134531.1 | Pragia fontium |
| 61 | 4271873 | 4272115 | + | NC_012880.1 | Musicola paradisiaca Ech703 |
| 62 | 3043207 | 3043449 | + | NZ_CP027107.1 | Cronobacter sakazakii |
| 63 | 388782 | 389024 | - | NZ_CP012257.1 | Cronobacter universalis NCTC 9529 |
| 64 | 3143914 | 3144159 | + | NZ_LS483470.1 | Leminorella richardii |
| 65 | 3755782 | 3756024 | - | NZ_CP016176.1 | Xenorhabdus hominickii |
| 66 | 438875 | 439117 | - | NZ_AP023184.1 | Buttiauxella agrestis |
| 67 | 1222167 | 1222409 | + | NZ_CP026047.1 | Raoultella planticola |
| 68 | 494362 | 494604 | - | NZ_CP046672.1 | Raoultella ornithinolytica |
| 69 | 3245114 | 3245359 | + | NZ_CP029185.2 | Limnobaculum parvum |
| 70 | 3639937 | 3640179 | + | NZ_CP012268.1 | Cronobacter muytjensii ATCC 51329 |
| 71 | 3681960 | 3682205 | + | NZ_CP034752.1 | Jinshanibacter zhutongyuii |
| 72 | 582373 | 582615 | - | NZ_CP036175.1 | Klebsiella huaxiensis |
| 73 | 441238 | 441480 | - | NZ_CP061511.1 | Mixta calida |
| 74 | 398941 | 399183 | - | NZ_CP012266.1 | Cronobacter dublinensis subsp. dublinensis LMG 23823 |
| 75 | 2494604 | 2494846 | + | NZ_CP009787.1 | Yersinia rohdei |
| 76 | 3576139 | 3576381 | + | NZ_CP034148.1 | Pantoea agglomerans |
| 77 | 2468861 | 2469103 | + | NZ_CP009460.1 | Dickeya fangzhongdai |
| 78 | 311366 | 311608 | - | NC_014500.1 | Dickeya dadantii 3937 |
| 79 | 543808 | 544050 | - | NZ_CP060111.1 | Klebsiella michiganensis |
| 80 | 515740 | 515982 | - | NZ_CP026377.1 | Mixta gaviniae |
| 81 | 2470488 | 2470730 | - | NZ_CP015137.1 | Dickeya solani IPO 2222 |
| 82 | 392040 | 392282 | + | NZ_CP020388.1 | Pluralibacter gergoviae |
| 83 | 505315 | 505557 | - | NZ_CP038853.1 | Pantoea vagans |
| 84 | 4264790 | 4265032 | - | NZ_CP028271.1 | Mixta intestinalis |
| 85 | 456375 | 456629 | - | NZ_CP072455.1 | Xenorhabdus budapestensis |
| 86 | 2255484 | 2255726 | + | NZ_CP009781.1 | Yersinia aldovae 670-83 |
| 87 | 4089313 | 4089555 | + | NZ_CP042220.2 | Dickeya poaceiphila |
| 88 | 302303 | 302545 | - | NZ_CP031560.1 | Dickeya dianthicola |
| 89 | 271000 | 271242 | - | NZ_CP023525.1 | Cedecea neteri |
| 90 | 4773849 | 4774091 | + | NZ_CP048784.1 | Serratia liquefaciens |
| 91 | 354321 | 354563 | - | NZ_LT615367.1 | Dickeya aquatica |
| 92 | 3258689 | 3258931 | + | NZ_FO704551.1 | Xenorhabdus poinarii G6 |
| 93 | 4668915 | 4669157 | + | NZ_LT906479.1 | Serratia ficaria |
| 94 | 493857 | 494099 | - | NC_017554.1 | Pantoea ananatis PA13 |
| 95 | 3659972 | 3660214 | + | NZ_CP023567.1 | Erwinia pyrifoliae |
| 96 | 4717239 | 4717481 | + | NZ_CP038662.1 | Serratia nematodiphila |
| 97 | 328264 | 328506 | - | NC_013961.1 | Erwinia amylovora CFBP1430 |
| 98 | 276531 | 276773 | - | NZ_LR134201.1 | Cedecea lapagei |
| 99 | 478830 | 479072 | - | NZ_CP071320.1 | Serratia ureilytica |
| 100 | 462390 | 462632 | - | NZ_CP050508.1 | Raoultella terrigena |
| 101 | 2402521 | 2402763 | + | NZ_CP049115.1 | Pantoea stewartii |
| 102 | 3161504 | 3161746 | + | NZ_CP067057.1 | Rahnella aceris |
| 103 | 3927274 | 3927516 | + | NZ_CP016948.1 | Serratia surfactantfaciens |
| 104 | 1194804 | 1195046 | + | NZ_CP011254.1 | Serratia fonticola |
| 105 | 4472087 | 4472329 | + | NZ_CP034036.1 | Brenneria nigrifluens DSM 30175 = ATCC 13028 |
| 106 | 3751838 | 3752110 | + | NZ_FO704550.1 | Xenorhabdus doucetiae |
| 107 | 314727 | 314969 | - | NZ_CP038498.1 | Pectobacterium punjabense |
| 108 | 1303894 | 1304136 | + | NZ_CP047495.1 | Pectobacterium brasiliense |
| 109 | 3779113 | 3779355 | + | NZ_CP015749.1 | Pectobacterium parmentieri |
| 110 | 4812342 | 4812584 | + | NZ_LR134494.1 | Serratia quinivorans |
| 111 | 4071869 | 4072111 | - | NZ_CP017482.1 | Pectobacterium polaris |
| 112 | 328196 | 328438 | - | NC_010694.1 | Erwinia tasmaniensis Et1/99 |
| 113 | 2070363 | 2070605 | - | NZ_CP015750.1 | Pectobacterium wasabiae CFBP 3304 |
| 114 | 4535817 | 4536059 | + | NZ_CP051652.1 | Pectobacterium carotovorum |
| 115 | 311055 | 311297 | - | NZ_CP034938.1 | Pectobacterium odoriferum |
| 116 | 308083 | 308325 | - | NZ_CP009125.1 | Pectobacterium atrosepticum |
| 117 | 1373007 | 1373246 | - | NZ_CP023009.1 | Lonsdalea britannica |
| 118 | 4630127 | 4630369 | + | NZ_CP065044.1 | Pectobacterium aroidearum |
| 119 | 4551367 | 4551603 | + | NC_014306.1 | Erwinia billingiae Eb661 |
| 120 | 996198 | 996440 | + | NZ_CP065640.1 | Serratia rubidaea |
| 121 | 190553 | 190795 | - | NZ_CP034035.1 | Brenneria rubrifaciens |
| 122 | 4343855 | 4344097 | + | NC_012912.1 | Dickeya chrysanthemi Ech1591 |
| 123 | 152518 | 152760 | - | NZ_CP015581.1 | Tatumella citrea |
| 124 | 3874377 | 3874619 | + | NZ_CP014137.1 | Brenneria goodwinii |
| 125 | 3570375 | 3570614 | + | NZ_CP065534.1 | Lonsdalea populi |
| 126 | 313318 | 313560 | - | NZ_CP025799.1 | Dickeya zeae |
| 127 | 1614804 | 1615046 | - | NZ_CP023536.1 | Providencia alcalifaciens |
| 128 | 460057 | 460299 | - | NZ_CP065838.1 | Klebsiella quasipneumoniae |
| 129 | 3398349 | 3398591 | + | NC_012779.2 | Edwardsiella ictaluri 93-146 |
| 130 | 1306538 | 1306780 | + | NZ_CP006664.1 | Edwardsiella anguillarum ET080813 |
| 131 | 4155816 | 4156058 | + | NZ_CP050150.1 | Hafnia alvei |
| 132 | 469812 | 470054 | - | NZ_CP054254.1 | Klebsiella variicola |
| 133 | 4814944 | 4815186 | + | NC_016845.1 | Klebsiella pneumoniae subsp. pneumoniae HS11286 |
| 134 | 4886638 | 4886880 | + | NC_015567.1 | Serratia plymuthica AS9 |
| 135 | 3047539 | 3047781 | - | NZ_CP014136.1 | Gibbsiella quercinecans |
| 136 | 463946 | 464188 | - | NZ_LR134475.1 | Klebsiella aerogenes |
| 137 | 459828 | 460070 | - | NZ_LN907827.1 | Erwinia gerundensis |
| 138 | 403976 | 404218 | - | NZ_CP012264.1 | Cronobacter condimenti 1330 |
| 139 | 456131 | 456373 | - | NZ_CP041247.1 | Raoultella electrica |
| 140 | 2099215 | 2099457 | - | NZ_CP023706.1 | Edwardsiella tarda |
| 141 | 2100221 | 2100457 | + | NZ_CP007445.1 | Gilliamella apicola |
| 142 | 495219 | 495461 | - | NZ_CP045720.1 | Pantoea eucalypti |
| 143 | 828303 | 828527 | + | NZ_LS483443.1 | Aggregatibacter segnis ATCC 33393 |
| 144 | 489337 | 489585 | - | NZ_CP047349.1 | Proteus terrae subsp. cibarius |
| 145 | 47959 | 48231 | - | NZ_LR134167.1 | Avibacterium volantium |
| 146 | 879914 | 880132 | + | NZ_LT906463.1 | Haemophilus pittmaniae |
| 147 | 3963588 | 3963836 | - | NC_010554.1 | Proteus mirabilis HI4320 |
| 148 | 2079528 | 2079776 | - | NZ_CP026364.1 | Proteus hauseri |
| 149 | 3551285 | 3551527 | + | NZ_LS483422.1 | Providencia heimbachae |
| 150 | 390301 | 390543 | - | NZ_CP016043.1 | Edwardsiella hoshinae |
| 151 | 3686662 | 3686904 | + | NZ_CP048796.1 | Providencia vermicola |
| 152 | 1516058 | 1516300 | - | NZ_CP029736.1 | Providencia rettgeri |
| 153 | 3072585 | 3072827 | + | NZ_CP031123.2 | Providencia huaxiensis |
++ More..
| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_009792.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF00364.24 | 0.93 | 142 | 1471 | same-strand | Biotin-requiring enzyme |
| 2 | PF02786.19 | 0.94 | 143 | 113.0 | same-strand | Carbamoyl-phosphate synthase L chain, ATP binding domain |
| 3 | PF00289.24 | 0.94 | 143 | 113.0 | same-strand | Biotin carboxylase, N-terminal domain |
| 4 | PF02785.21 | 0.94 | 143 | 113.0 | same-strand | Biotin carboxylase C-terminal domain |
| 5 | PF02655.16 | 0.94 | 143 | 113.0 | same-strand | ATP-grasp domain |
| 6 | PF02222.24 | 0.94 | 143 | 113.0 | same-strand | ATP-grasp domain |
| 7 | PF00474.19 | 1.0 | 152 | -10 | same-strand | Sodium:solute symporter family |
| 8 | PF06325.15 | 1.0 | 152 | 1454 | same-strand | Ribosomal protein L11 methyltransferase (PrmA) |
| 9 | PF01207.19 | 1.0 | 152 | 2870 | same-strand | Dihydrouridine synthase (Dus) |
| 10 | PF02954.21 | 0.99 | 150 | 3780 | same-strand | Bacterial regulatory protein, Fis family |
| 11 | PF00174.21 | 0.71 | 108 | 3245.0 | same-strand | Oxidoreductase molybdopterin binding domain |
| 12 | PF01794.21 | 0.76 | 115 | 2646 | same-strand | Ferric reductase like transmembrane component |
| 13 | PF01220.21 | 0.78 | 119 | 1973 | same-strand | Dehydroquinase class II |
++ More..